An mRNA Blueprint for C-4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C-3 and C-4 Species

Bräutigam A, Kajala K, Wullenweber J, Sommer M, Gagneul D, Weber KL, Carr KM, Gowik U, Mass J, Lercher MJ, Westhoff P, et al. (2011)
Plant Physiology 155(1): 142-156.

Download
OA 827.65 KB
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Volltext vorhanden für diesen Nachweis
Autor
; ; ; ; ; ; ; ; ; ; ;
Alle
Abstract / Bemerkung
C-4 photosynthesis involves alterations to the biochemistry, cell biology, and development of leaves. Together, these modifications increase the efficiency of photosynthesis, and despite the apparent complexity of the pathway, it has evolved at least 45 times independently within the angiosperms. To provide insight into the extent to which gene expression is altered between C-3 and C-4 leaves, and to identify candidates associated with the C-4 pathway, we used massively parallel mRNA sequencing of closely related C-3 (Cleome spinosa) and C-4 (Cleome gynandra) species. Gene annotation was facilitated by the phylogenetic proximity of Cleome and Arabidopsis (Arabidopsis thaliana). Up to 603 transcripts differ in abundance between these C-3 and C-4 leaves. These include 17 transcription factors, putative transport proteins, as well as genes that in Arabidopsis are implicated in chloroplast movement and expansion, plasmodesmatal connectivity, and cell wall modification. These are all characteristics known to alter in a C-4 leaf but that previously had remained undefined at the molecular level. We also document large shifts in overall transcription profiles for selected functional classes. Our approach defines the extent to which transcript abundance in these C-3 and C-4 leaves differs, provides a blueprint for the NAD-malic enzyme C-4 pathway operating in a dicotyledon, and furthermore identifies potential regulators. We anticipate that comparative transcriptomics of closely related species will provide deep insight into the evolution of other complex traits.
Erscheinungsjahr
Zeitschriftentitel
Plant Physiology
Band
155
Zeitschriftennummer
1
Seite
142-156
ISSN
PUB-ID

Zitieren

Bräutigam A, Kajala K, Wullenweber J, et al. An mRNA Blueprint for C-4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C-3 and C-4 Species. Plant Physiology. 2011;155(1):142-156.
Bräutigam, A., Kajala, K., Wullenweber, J., Sommer, M., Gagneul, D., Weber, K. L., Carr, K. M., et al. (2011). An mRNA Blueprint for C-4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C-3 and C-4 Species. Plant Physiology, 155(1), 142-156. doi:10.1104/pp.110.159442
Bräutigam, A., Kajala, K., Wullenweber, J., Sommer, M., Gagneul, D., Weber, K. L., Carr, K. M., Gowik, U., Mass, J., Lercher, M. J., et al. (2011). An mRNA Blueprint for C-4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C-3 and C-4 Species. Plant Physiology 155, 142-156.
Bräutigam, A., et al., 2011. An mRNA Blueprint for C-4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C-3 and C-4 Species. Plant Physiology, 155(1), p 142-156.
A. Bräutigam, et al., “An mRNA Blueprint for C-4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C-3 and C-4 Species”, Plant Physiology, vol. 155, 2011, pp. 142-156.
Bräutigam, A., Kajala, K., Wullenweber, J., Sommer, M., Gagneul, D., Weber, K.L., Carr, K.M., Gowik, U., Mass, J., Lercher, M.J., Westhoff, P., Hibberd, J.M., Weber, A.P.M.: An mRNA Blueprint for C-4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C-3 and C-4 Species. Plant Physiology. 155, 142-156 (2011).
Bräutigam, Andrea, Kajala, Kaisa, Wullenweber, Julia, Sommer, Manuel, Gagneul, David, Weber, Katrin L., Carr, Kevin M., Gowik, Udo, Mass, Janina, Lercher, Martin J., Westhoff, Peter, Hibberd, Julian M., and Weber, Andreas P. M. “An mRNA Blueprint for C-4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C-3 and C-4 Species”. Plant Physiology 155.1 (2011): 142-156.
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Copyright Statement:
This Item is protected by copyright and/or related rights. [...]
Volltext(e)
Access Level
OA Open Access
Zuletzt Hochgeladen
2017-12-19T09:22:38Z

92 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Carbonic anhydrase and the molecular evolution of C4 photosynthesis.
Ludwig M., Plant Cell Environ 35(1), 2012
PMID: 21631531
Multiple Arabidopsis genes primed for recruitment into C₄ photosynthesis.
Kajala K, Brown NJ, Williams BP, Borrill P, Taylor LE, Hibberd JM., Plant J 69(1), 2012
PMID: 21883556
Regulatory mechanisms underlying C4 photosynthesis.
Wang L, Peterson RB, Brutnell TP., New Phytol 190(1), 2011
PMID: 21299565
The role of proteins in C(3) plants prior to their recruitment into the C(4) pathway.
Aubry S, Brown NJ, Hibberd JM., J Exp Bot 62(9), 2011
PMID: 21321052
Strategies for engineering a two-celled C(4) photosynthetic pathway into rice.
Kajala K, Covshoff S, Karki S, Woodfield H, Tolley BJ, Dionora MJ, Mogul RT, Mabilangan AE, Danila FR, Hibberd JM, Quick WP., J Exp Bot 62(9), 2011
PMID: 21335436
Exploiting the engine of C(4) photosynthesis.
Sage RF, Zhu XG., J Exp Bot 62(9), 2011
PMID: 21652533
Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing.
Franssen SU, Shrestha RP, Bräutigam A, Bornberg-Bauer E, Weber AP., BMC Genomics 12(), 2011
PMID: 21569327
A plastidial sodium-dependent pyruvate transporter.
Furumoto T, Yamaguchi T, Ohshima-Ichie Y, Nakamura M, Tsuchida-Iwata Y, Shimamura M, Ohnishi J, Hata S, Gowik U, Westhoff P, Bräutigam A, Weber AP, Izui K., Nature 476(7361), 2011
PMID: 21866161

74 References

Daten bereitgestellt von Europe PubMed Central.

The Arabidopsis mutant dct is deficient in the plastidic glutamate/malate translocator DiT2.
Renne P, Dressen U, Hebbeker U, Hille D, Flugge UI, Westhoff P, Weber AP., Plant J. 35(3), 2003
PMID: 12887583
Plasmodesmata and the control of symplastic transport
Roberts AG, Oparka KJ., 2003
Sugar sensing and signaling in plants: conserved and novel mechanisms.
Rolland F, Baena-Gonzalez E, Sheen J., Annu Rev Plant Biol 57(), 2006
PMID: 16669778
The maize golden2 gene defines a novel class of transcriptional regulators in plants.
Rossini L, Cribb L, Martin DJ, Langdale JA., Plant Cell 13(5), 2001
PMID: 11340194
The evolution of C4 photosynthesis.
Sage RF., New Phytol. 161(2), 2004
PMID: IND43668189
A multi-treatment experimental system to examine photosynthetic differentiation in the maize leaf.
Sawers RJ, Liu P, Anufrikova K, Hwang JT, Brutnell TP., BMC Genomics 8(), 2007
PMID: 17212830
Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis.
Schaffer R, Landgraf J, Accerbi M, Simon V, Larson M, Wisman E., Plant Cell 13(1), 2001
PMID: 11158533
A gene expression map of Arabidopsis thaliana development.
Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Scholkopf B, Weigel D, Lohmann JU., Nat. Genet. 37(5), 2005
PMID: 15806101
C4 GENE EXPRESSION.
Sheen J., Annu. Rev. Plant Physiol. Plant Mol. Biol. 50(), 1999
PMID: 15012208
The Arabidopsis Information Resource (TAIR): gene structure and function annotation.
Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E., Nucleic Acids Res. 36(Database issue), 2008
PMID: 17986450
Identifying and characterizing plastidic 2-oxoglutarate/malate and dicarboxylate transporters in Arabidopsis thaliana.
Taniguchi M, Taniguchi Y, Kawasaki M, Takeda S, Kato T, Sato S, Tabata S, Miyake H, Sugiyama T., Plant Cell Physiol. 43(7), 2002
PMID: 12154133
Differentiation of dicarboxylate transporters in mesophyll and bundle sheath chloroplasts of maize.
Taniguchi Y, Nagasaki J, Kawasaki M, Miyake H, Sugiyama T, Taniguchi M., Plant Cell Physiol. 45(2), 2004
PMID: 14988489
Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis.
Vogel JT, Zarka DG, Van Buskirk HA, Fowler SG, Thomashow MF., Plant J. 41(2), 2005
PMID: 15634197
Proof of C4 photosynthesis without Kranz anatomy in Bienertia cycloptera (Chenopodiaceae).
Voznesenskaya EV, Franceschi VR, Kiirats O, Artyusheva EG, Freitag H, Edwards GE., Plant J. 31(5), 2002
PMID: 12207654
Kranz anatomy is not essential for terrestrial C4 plant photosynthesis.
Voznesenskaya EV, Franceschi VR, Kiirats O, Freitag H, Edwards GE., Nature 414(6863), 2001
PMID: 11734854
Physiological, anatomical and biochemical characterisation of photosynthetic types in genus Cleome (Cleomaceae)
Voznesenskaya EV, Koteyeva NK, Chuong SDX, Ivanova AN, Barroca J, Craven LA, Edwards GE., 2007
Comparison of next generation sequencing technologies for transcriptome characterization.
Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, dePamphilis CW., BMC Genomics 10(), 2009
PMID: 19646272
RNA-Seq: a revolutionary tool for transcriptomics.
Wang Z, Gerstein M, Snyder M., Nat. Rev. Genet. 10(1), 2009
PMID: 19015660
GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis.
Waters MT, Wang P, Korkaric M, Capper RG, Saunders NJ, Langdale JA., Plant Cell 21(4), 2009
PMID: 19376934
Plastid transport and metabolism of C and C plants: comparative analysis and possible biotechnological exploitation
Weber APM, von S., 2010
Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
Weber AP, Weber KL, Carr K, Wilkerson C, Ohlrogge JB., Plant Physiol. 144(1), 2007
PMID: 17351049
Transcript profiling in host-pathogen interactions.
Wise RP, Moscou MJ, Bogdanove AJ, Whitham SA., Annu Rev Phytopathol 45(), 2007
PMID: 17480183

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 20543093
PubMed | Europe PMC

Suchen in

Google Scholar