Topology and prediction of RNA pseudoknots

M. Reidys C, W. D. Huang F, E. Andersen J, C. Penner R, F. Stadler P, Nebel M (2011)
Bioinformatics 27(8): 1076--1085.

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Bioinformatics
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27
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8
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1076--1085
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M. Reidys C, W. D. Huang F, E. Andersen J, C. Penner R, F. Stadler P, Nebel M. Topology and prediction of RNA pseudoknots. Bioinformatics. 2011;27(8):1076--1085.
M. Reidys, C., W. D. Huang, F., E. Andersen, J., C. Penner, R., F. Stadler, P., & Nebel, M. (2011). Topology and prediction of RNA pseudoknots. Bioinformatics, 27(8), 1076--1085. doi:10.1093/bioinformatics/btr090
M. Reidys, C., W. D. Huang, F., E. Andersen, J., C. Penner, R., F. Stadler, P., and Nebel, M. (2011). Topology and prediction of RNA pseudoknots. Bioinformatics 27, 1076--1085.
M. Reidys, C., et al., 2011. Topology and prediction of RNA pseudoknots. Bioinformatics, 27(8), p 1076--1085.
C. M. Reidys, et al., “Topology and prediction of RNA pseudoknots”, Bioinformatics, vol. 27, 2011, pp. 1076--1085.
M. Reidys, C., W. D. Huang, F., E. Andersen, J., C. Penner, R., F. Stadler, P., Nebel, M.: Topology and prediction of RNA pseudoknots. Bioinformatics. 27, 1076--1085 (2011).
M. Reidys, Christian, W. D. Huang, Fenix, E. Andersen, Jorgen, C. Penner, Robert, F. Stadler, Peter, and Nebel, Markus. “Topology and prediction of RNA pseudoknots”. Bioinformatics 27.8 (2011): 1076--1085.

24 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

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Tyc O, Song C, Dickschat JS, Vos M, Garbeva P., Trends Microbiol 25(4), 2017
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Pseudoknots in RNA folding landscapes.
Kucharík M, Hofacker IL, Stadler PF, Qin J., Bioinformatics 32(2), 2016
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URS DataBase: universe of RNA structures and their motifs.
Baulin E, Yacovlev V, Khachko D, Spirin S, Roytberg M., Database (Oxford) 2016(), 2016
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Topological language for RNA.
Huang FW, Reidys CM., Math Biosci 282(), 2016
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On RNA-RNA interaction structures of fixed topological genus.
Fu BM, Han HS, Reidys CM., Math Biosci 262(), 2015
PMID: 25640867
Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores.
Song Y, Hua L, Shapiro BA, Wang JT., BMC Bioinformatics 16(), 2015
PMID: 25727492
Product Grammars for Alignment and Folding.
Höner Zu Siederdissen C, Hofacker IL, Stadler PF., IEEE/ACM Trans Comput Biol Bioinform 12(3), 2015
PMID: 26357262
Algebraic Dynamic Programming over general data structures.
zu Siederdissen CH, Prohaska SJ, Stadler PF., BMC Bioinformatics 16 Suppl 19(), 2015
PMID: 26695390
Combinatorics of γ-structures.
Han HS, Li TJ, Reidys CM., J Comput Biol 21(8), 2014
PMID: 24689708
Shapes of interacting RNA complexes.
Fu BM, Reidys CM., J Comput Biol 21(9), 2014
PMID: 25075750
Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures.
Qin J, Fricke M, Marz M, Stadler PF, Backofen R., Algorithms Mol Biol 9(), 2014
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Hydrogen bond rotations as a uniform structural tool for analyzing protein architecture.
Penner RC, Andersen ES, Jensen JL, Kantcheva AK, Bublitz M, Nissen P, Rasmussen AM, Svane KL, Hammer B, Rezazadegan R, Nielsen NC, Nielsen JT, Andersen JE., Nat Commun 5(), 2014
PMID: 25517704
Topological classification and enumeration of RNA structures by genus.
Andersen JE, Penner RC, Reidys CM, Waterman MS., J Math Biol 67(5), 2013
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McGenus: a Monte Carlo algorithm to predict RNA secondary structures with pseudoknots.
Bon M, Micheletti C, Orland H., Nucleic Acids Res 41(3), 2013
PMID: 23248008
Enumeration of RNA complexes via random matrix theory.
Andersen JE, Chekhov LO, Penner RC, Reidys CM, Sułkowski P., Biochem Soc Trans 41(2), 2013
PMID: 23514171
On topological RNA interaction structures.
Qin J, Reidys CM., J Comput Biol 20(7), 2013
PMID: 23829651
Generation of RNA pseudoknot structures with topological genus filtration.
Huang FW, Nebel ME, Reidys CM., Math Biosci 245(2), 2013
PMID: 23900061
Addendum: topology and prediction of RNA pseudoknots.
Reidys CM, Huang FW, Andersen JE, Penner RC, Stadler PF, Nebel ME., Bioinformatics 28(2), 2012
PMID: 22106334
On the page number of RNA secondary structures with pseudoknots.
Clote P, Dobrev S, Dotu I, Kranakis E, Krizanc D, Urrutia J., J Math Biol 65(6-7), 2012
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Topology of RNA-RNA interaction structures.
Andersen JE, Huang FW, Penner RC, Reidys CM., J Comput Biol 19(7), 2012
PMID: 22731621
On the combinatorics of sparsification.
Huang FW, Reidys CM., Algorithms Mol Biol 7(1), 2012
PMID: 23088372

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