DaTo: an atlas of biological databases and tools

Li Q, Zhou Y, Jiao Y, Zhang Z, Bai L, Tong L, Yang X, Sommer B, Hofestädt R, Chen M (2016)
JOURNAL OF INTEGRATIVE BIOINFORMATICS 13(4): 297.

Download
No fulltext has been uploaded. References only!
Journal Article | Original Article | Published | English

No fulltext has been uploaded

Author
; ; ; ; ; ; ; ; ;
Abstract
This work presents DaTo, a semi-automatically generated world atlas of biological databases and tools. It extracts raw information from all PubMed articles which contain exact URLs in their abstract section, followed by a manual curation of the abstract and the URL accessibility. DaTo features a user-friendly query interface, providing extensible URL-related annotations, such as the status, the location and the country of the URL. A graphical interaction network browser has also been integrated into the DaTo web interface to facilitate exploration of the relationship between different tools and databases with respect to their ontology-based semantic similarity. Using DaTo, the geographical locations, the health statuses, as well as the journal associations were evaluated with respect to the historical development of bioinformatics tools and databases over the last 20 years. We hope it will inspire the biological community to gain a systematic insight into bioinformatics resources. DaTo is accessible via http://bis.zju.edu.cn/DaTo/.
Publishing Year
ISSN
PUB-ID

Cite this

Li Q, Zhou Y, Jiao Y, et al. DaTo: an atlas of biological databases and tools. JOURNAL OF INTEGRATIVE BIOINFORMATICS. 2016;13(4): 297.
Li, Q., Zhou, Y., Jiao, Y., Zhang, Z., Bai, L., Tong, L., Yang, X., et al. (2016). DaTo: an atlas of biological databases and tools. JOURNAL OF INTEGRATIVE BIOINFORMATICS, 13(4), 297. doi:10.2390/biecoll-jib-2016-297
Li, Q., Zhou, Y., Jiao, Y., Zhang, Z., Bai, L., Tong, L., Yang, X., Sommer, B., Hofestädt, R., and Chen, M. (2016). DaTo: an atlas of biological databases and tools. JOURNAL OF INTEGRATIVE BIOINFORMATICS 13:297.
Li, Q., et al., 2016. DaTo: an atlas of biological databases and tools. JOURNAL OF INTEGRATIVE BIOINFORMATICS, 13(4): 297.
Q. Li, et al., “DaTo: an atlas of biological databases and tools”, JOURNAL OF INTEGRATIVE BIOINFORMATICS, vol. 13, 2016, : 297.
Li, Q., Zhou, Y., Jiao, Y., Zhang, Z., Bai, L., Tong, L., Yang, X., Sommer, B., Hofestädt, R., Chen, M.: DaTo: an atlas of biological databases and tools. JOURNAL OF INTEGRATIVE BIOINFORMATICS. 13, : 297 (2016).
Li, Qilin, Zhou, Yincong, Jiao, Yingmin, Zhang, Zhao, Bai, Lin, Tong, Li, Yang, Xiong, Sommer, Bjoern, Hofestädt, Ralf, and Chen, Ming. “DaTo: an atlas of biological databases and tools”. JOURNAL OF INTEGRATIVE BIOINFORMATICS 13.4 (2016): 297.
This data publication is cited in the following publications:
This publication cites the following data publications:

Export

0 Marked Publications

Open Data PUB

Web of Science

View record in Web of Science®

Sources

PMID: 28187413
PubMed | Europe PMC

Search this title in

Google Scholar