DaTo: an atlas of biological databases and tools

Li Q, Zhou Y, Jiao Y, Zhang Z, Bai L, Tong L, Yang X, Sommer B, Hofestädt R, Chen M (2016)
JOURNAL OF INTEGRATIVE BIOINFORMATICS 13(4): 297.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
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Abstract / Bemerkung
This work presents DaTo, a semi-automatically generated world atlas of biological databases and tools. It extracts raw information from all PubMed articles which contain exact URLs in their abstract section, followed by a manual curation of the abstract and the URL accessibility. DaTo features a user-friendly query interface, providing extensible URL-related annotations, such as the status, the location and the country of the URL. A graphical interaction network browser has also been integrated into the DaTo web interface to facilitate exploration of the relationship between different tools and databases with respect to their ontology-based semantic similarity. Using DaTo, the geographical locations, the health statuses, as well as the journal associations were evaluated with respect to the historical development of bioinformatics tools and databases over the last 20 years. We hope it will inspire the biological community to gain a systematic insight into bioinformatics resources. DaTo is accessible via http://bis.zju.edu.cn/DaTo/.
Erscheinungsjahr
Zeitschriftentitel
JOURNAL OF INTEGRATIVE BIOINFORMATICS
Band
13
Zeitschriftennummer
4
Artikelnummer
297
ISSN
PUB-ID

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Li Q, Zhou Y, Jiao Y, et al. DaTo: an atlas of biological databases and tools. JOURNAL OF INTEGRATIVE BIOINFORMATICS. 2016;13(4): 297.
Li, Q., Zhou, Y., Jiao, Y., Zhang, Z., Bai, L., Tong, L., Yang, X., et al. (2016). DaTo: an atlas of biological databases and tools. JOURNAL OF INTEGRATIVE BIOINFORMATICS, 13(4), 297. doi:10.2390/biecoll-jib-2016-297
Li, Q., Zhou, Y., Jiao, Y., Zhang, Z., Bai, L., Tong, L., Yang, X., Sommer, B., Hofestädt, R., and Chen, M. (2016). DaTo: an atlas of biological databases and tools. JOURNAL OF INTEGRATIVE BIOINFORMATICS 13:297.
Li, Q., et al., 2016. DaTo: an atlas of biological databases and tools. JOURNAL OF INTEGRATIVE BIOINFORMATICS, 13(4): 297.
Q. Li, et al., “DaTo: an atlas of biological databases and tools”, JOURNAL OF INTEGRATIVE BIOINFORMATICS, vol. 13, 2016, : 297.
Li, Q., Zhou, Y., Jiao, Y., Zhang, Z., Bai, L., Tong, L., Yang, X., Sommer, B., Hofestädt, R., Chen, M.: DaTo: an atlas of biological databases and tools. JOURNAL OF INTEGRATIVE BIOINFORMATICS. 13, : 297 (2016).
Li, Qilin, Zhou, Yincong, Jiao, Yingmin, Zhang, Zhao, Bai, Lin, Tong, Li, Yang, Xiong, Sommer, Bjoern, Hofestädt, Ralf, and Chen, Ming. “DaTo: an atlas of biological databases and tools”. JOURNAL OF INTEGRATIVE BIOINFORMATICS 13.4 (2016): 297.

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PMID: 28187413
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