Fine-tuning structural RNA alignments in the twilight zone

Bremges A, Schirmer S, Giegerich R (2010)
BMC Bioinformatics 11(1): 222.

Download
No fulltext has been uploaded. References only!
Journal Article | Published | English

No fulltext has been uploaded

Publishing Year
ISSN
PUB-ID

Cite this

Bremges A, Schirmer S, Giegerich R. Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics. 2010;11(1): 222.
Bremges, A., Schirmer, S., & Giegerich, R. (2010). Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics, 11(1), 222. doi:10.1186/1471-2105-11-222
Bremges, A., Schirmer, S., and Giegerich, R. (2010). Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics 11:222.
Bremges, A., Schirmer, S., & Giegerich, R., 2010. Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics, 11(1): 222.
A. Bremges, S. Schirmer, and R. Giegerich, “Fine-tuning structural RNA alignments in the twilight zone”, BMC Bioinformatics, vol. 11, 2010, : 222.
Bremges, A., Schirmer, S., Giegerich, R.: Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics. 11, : 222 (2010).
Bremges, Andreas, Schirmer, Stefanie, and Giegerich, Robert. “Fine-tuning structural RNA alignments in the twilight zone”. BMC Bioinformatics 11.1 (2010): 222.
This data publication is cited in the following publications:
This publication cites the following data publications:

3 Citations in Europe PMC

Data provided by Europe PubMed Central.

The BRaliBase dent-a tale of benchmark design and interpretation.
Lowes B, Chauve C, Ponty Y, Giegerich R., Brief. Bioinformatics 18(2), 2017
PMID: 26984616
Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores.
Song Y, Hua L, Shapiro BA, Wang JT., BMC Bioinformatics 16(), 2015
PMID: 25727492
Widespread purifying selection on RNA structure in mammals.
Smith MA, Gesell T, Stadler PF, Mattick JS., Nucleic Acids Res. 41(17), 2013
PMID: 23847102

33 References

Data provided by Europe PubMed Central.

Fast and reliable prediction of noncoding RNAs.
Washietl S, Hofacker IL, Stadler PF., Proc. Natl. Acad. Sci. U.S.A. 102(7), 2005
PMID: 15665081
Strategies for measuring evolutionary conservation of RNA secondary structures.
Gruber AR, Bernhart SH, Hofacker IL, Washietl S., BMC Bioinformatics 9(), 2008
PMID: 18302738
RNAalifold: improved consensus structure prediction for RNA alignments.
Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF., BMC Bioinformatics 9(), 2008
PMID: 19014431
Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions.
Torarinsson E, Yao Z, Wiklund ED, Bramsen JB, Hansen C, Kjems J, Tommerup N, Ruzzo WL, Gorodkin J., Genome Res. 18(2), 2008
PMID: 18096747
BRAliBase
AUTHOR UNKNOWN, 0
Rfam: annotating non-coding RNAs in complete genomes.
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A., Nucleic Acids Res. 33(Database issue), 2005
PMID: 15608160
5S Ribosomal RNA Database.
Szymanski M, Barciszewska MZ, Erdmann VA, Barciszewski J., Nucleic Acids Res. 30(1), 2002
PMID: 11752286

Export

0 Marked Publications

Open Data PUB

Web of Science

View record in Web of Science®

Sources

PMID: 20433706
PubMed | Europe PMC

Search this title in

Google Scholar