Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190

Sales CM, Mahendra S, Grostern A, Parales RE, Goodwin LA, Woyke T, Nolan M, Lapidus A, Chertkov O, Ovchinnikova G, Sczyrba A, et al. (2011)
Journal of Bacteriology 193(17): 4549-4550.

Journal Article | Published | English

No fulltext has been uploaded

Author
; ; ; ; ; ; ; ; ; ; ;
All
Abstract
Pseudonocardia dioxanivorans CB1190 is the first bacterium reported to be capable of growth on the environmental contaminant 1,4-dioxane and the first member of the genus Pseudonocardia for which there is an annotated genome sequence. Preliminary analysis of the genome (chromosome and three plasmids) indicates that strain CB1190 possesses several multicomponent monooxygenases that could be involved in the aerobic degradation of 1,4-dioxane and other environmental contaminants.
Publishing Year
ISSN
PUB-ID

Cite this

Sales CM, Mahendra S, Grostern A, et al. Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190. Journal of Bacteriology. 2011;193(17):4549-4550.
Sales, C. M., Mahendra, S., Grostern, A., Parales, R. E., Goodwin, L. A., Woyke, T., Nolan, M., et al. (2011). Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190. Journal of Bacteriology, 193(17), 4549-4550.
Sales, C. M., Mahendra, S., Grostern, A., Parales, R. E., Goodwin, L. A., Woyke, T., Nolan, M., Lapidus, A., Chertkov, O., Ovchinnikova, G., et al. (2011). Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190. Journal of Bacteriology 193, 4549-4550.
Sales, C.M., et al., 2011. Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190. Journal of Bacteriology, 193(17), p 4549-4550.
C.M. Sales, et al., “Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190”, Journal of Bacteriology, vol. 193, 2011, pp. 4549-4550.
Sales, C.M., Mahendra, S., Grostern, A., Parales, R.E., Goodwin, L.A., Woyke, T., Nolan, M., Lapidus, A., Chertkov, O., Ovchinnikova, G., Sczyrba, A., Alvarez-Cohen, L.: Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190. Journal of Bacteriology. 193, 4549-4550 (2011).
Sales, Christopher M., Mahendra, Shaily, Grostern, Ariel, Parales, Rebecca E, Goodwin, Lynne A, Woyke, Tanja, Nolan, Matt, Lapidus, Alla, Chertkov, Olga, Ovchinnikova, Galina, Sczyrba, Alexander, and Alvarez-Cohen, Lisa. “Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190”. Journal of Bacteriology 193.17 (2011): 4549-4550.
This data publication is cited in the following publications:
This publication cites the following data publications:

11 Citations in Europe PMC

Data provided by Europe PubMed Central.

Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae.
Rebets Y, Tokovenko B, Lushchyk I, Ruckert C, Zaburannyi N, Bechthold A, Kalinowski J, Luzhetskyy A., BMC Genomics 15(), 2014
PMID: 25301375
Identification of biomarker genes to predict biodegradation of 1,4-dioxane.
Gedalanga PB, Pornwongthong P, Mora R, Chiang SY, Baldwin B, Ogles D, Mahendra S., Appl. Environ. Microbiol. 80(10), 2014
PMID: 24632253
Transition metals and organic ligands influence biodegradation of 1,4-dioxane.
Pornwongthong P, Mulchandani A, Gedalanga PB, Mahendra S., Appl. Biochem. Biotechnol. 173(1), 2014
PMID: 24627120
A novel taxonomic marker that discriminates between morphologically complex actinomycetes.
Girard G, Traag BA, Sangal V, Mascini N, Hoskisson PA, Goodfellow M, van Wezel GP., Open Biol 3(10), 2013
PMID: 24153003
Oxidation of the cyclic ethers 1,4-dioxane and tetrahydrofuran by a monooxygenase in two Pseudonocardia species.
Sales CM, Grostern A, Parales JV, Parales RE, Alvarez-Cohen L., Appl. Environ. Microbiol. 79(24), 2013
PMID: 24096414
The genome sequence of Streptomyces lividans 66 reveals a novel tRNA-dependent peptide biosynthetic system within a metal-related genomic island.
Cruz-Morales P, Vijgenboom E, Iruegas-Bocardo F, Girard G, Yanez-Guerra LA, Ramos-Aboites HE, Pernodet JL, Anne J, van Wezel GP, Barona-Gomez F., Genome Biol Evol 5(6), 2013
PMID: 23709624
Isolation and characterization of bacterial strains that have high ability to degrade 1,4-dioxane as a sole carbon and energy source.
Sei K, Miyagaki K, Kakinoki T, Fukugasako K, Inoue D, Ike M., Biodegradation 24(5), 2013
PMID: 23239086
Complete genome sequence of Saccharothrix espanaensis DSM 44229(T) and comparison to the other completely sequenced Pseudonocardiaceae.
Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Puhler A, Szczepanowski R, Bechthold A, Ruckert C., BMC Genomics 13(), 2012
PMID: 22958348
Glyoxylate metabolism is a key feature of the metabolic degradation of 1,4-dioxane by Pseudonocardia dioxanivorans strain CB1190.
Grostern A, Sales CM, Zhuang WQ, Erbilgin O, Alvarez-Cohen L., Appl. Environ. Microbiol. 78(9), 2012
PMID: 22327578

20 References

Data provided by Europe PubMed Central.

A mixed community of actinomycetes produce multiple antibiotics for the fungus farming ant Acromyrmex octospinosus.
Barke J, Seipke RF, Gruschow S, Heavens D, Drou N, Bibb MJ, Goss RJ, Yu DW, Hutchings MI., BMC Biol. 8(), 2010
PMID: 20796277
Specificity in the symbiotic association between fungus-growing ants and protective bacteria
Cafaro M.., 2011

AUTHOR UNKNOWN, 0
Finishing repeat regions automatically with Dupfinisher
Han C., Chain P.., 2006
Analysis of the relative abundance of different types of bacteria capable of toluene degradation in a compost biofilter.
Juteau P, Larocque R, Rho D, LeDuy A., Appl. Microbiol. Biotechnol. 52(6), 1999
PMID: 10616721
Tetrahydrofuran degradation by a newly isolated culture of Pseudonocardia sp. strain K1.
Kohlweyer U, Thiemer B, Schrader T, Andreesen JR., FEMS Microbiol. Lett. 186(2), 2000
PMID: 10802188
Two new genera of nocardioform actinomycetes: gen. nov. and gen. nov
Lechevalier M., Prauser H., Labeda D., Ruan J.., 1986
Pseudonocardia chloroethenivorans sp. nov., a chloroethene-degrading actinomycete.
Lee SB, Strand SE, Stensel HD, Herwig RP., Int. J. Syst. Evol. Microbiol. 54(Pt 1), 2004
PMID: 14742470
Pseudonocardia dioxanivorans sp. nov., a novel actinomycete that grows on 1,4-dioxane.
Mahendra S, Alvarez-Cohen L., Int. J. Syst. Evol. Microbiol. 55(Pt 2), 2005
PMID: 15774630
Kinetics of 1,4-dioxane biodegradation by monooxygenase-expressing bacteria.
Mahendra S, Alvarez-Cohen L., Environ. Sci. Technol. 40(17), 2006
PMID: 16999122
Identification of the intermediates of in vivo oxidation of 1 ,4-dioxane by monooxygenase-containing bacteria.
Mahendra S, Petzold CJ, Baidoo EE, Keasling JD, Alvarez-Cohen L., Environ. Sci. Technol. 41(21), 2007
PMID: 18044507
Genome sequencing in microfabricated high-density picolitre reactors.
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM., Nature 437(7057), 2005
PMID: 16056220
Dentigerumycin: a bacterial mediator of an ant-fungus symbiosis.
Oh DC, Poulsen M, Currie CR, Clardy J., Nat. Chem. Biol. 5(6), 2009
PMID: 19330011
Degradation of 1,4-dioxane by an actinomycete in pure culture.
Parales RE, Adamus JE, White N, May HD., Appl. Environ. Microbiol. 60(12), 1994
PMID: 7811088
Biodegradation of ether pollutants by Pseudonocardia sp. strain ENV478.
Vainberg S, McClay K, Masuda H, Root D, Condee C, Zylstra GJ, Steffan RJ., Appl. Environ. Microbiol. 72(8), 2006
PMID: 16885268
Occurrence and treatment of 1,4-dioxane in aqueous environments
Zenker M., Borden R., Barlaz M.., 2003
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Zerbino DR, Birney E., Genome Res. 18(5), 2008
PMID: 18349386

Export

0 Marked Publications

Open Data PUB

Sources

PMID: 21725009
PubMed | Europe PMC

Search this title in

Google Scholar