Targeted diversity generation by intraterrestrial archaea and archaeal viruses

Paul BG, Bagby SC, Czornyj E, Arambula D, Handa S, Sczyrba A, Ghosh P, Miller JF, Valentine DL (2015)
Nature Communications 6: 6585.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
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Abstract / Bemerkung
In the evolutionary arms race between microbes, their parasites, and their neighbours, the capacity for rapid protein diversification is a potent weapon. Diversity-generating retroelements (DGRs) use mutagenic reverse transcription and retrohoming to generate myriad variants of a target gene. Originally discovered in pathogens, these retroelements have been identified in bacteria and their viruses, but never in archaea. Here we report the discovery of intact DGRs in two distinct intraterrestrial archaeal systems: a novel virus that appears to infect archaea in the marine subsurface, and, separately, two uncultivated nanoarchaea from the terrestrial subsurface. The viral DGR system targets putative tail fibre ligand-binding domains, potentially generating >10(18) protein variants. The two single-cell nanoarchaeal genomes each possess ≥4 distinct DGRs. Against an expected background of low genome-wide mutation rates, these results demonstrate a previously unsuspected potential for rapid, targeted sequence diversification in intraterrestrial archaea and their viruses.
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Nature Communications
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6
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6585
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Paul BG, Bagby SC, Czornyj E, et al. Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nature Communications. 2015;6:6585.
Paul, B. G., Bagby, S. C., Czornyj, E., Arambula, D., Handa, S., Sczyrba, A., Ghosh, P., et al. (2015). Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nature Communications, 6, 6585. doi:10.1038/ncomms7585
Paul, B. G., Bagby, S. C., Czornyj, E., Arambula, D., Handa, S., Sczyrba, A., Ghosh, P., Miller, J. F., and Valentine, D. L. (2015). Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nature Communications 6, 6585.
Paul, B.G., et al., 2015. Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nature Communications, 6, p 6585.
B.G. Paul, et al., “Targeted diversity generation by intraterrestrial archaea and archaeal viruses”, Nature Communications, vol. 6, 2015, pp. 6585.
Paul, B.G., Bagby, S.C., Czornyj, E., Arambula, D., Handa, S., Sczyrba, A., Ghosh, P., Miller, J.F., Valentine, D.L.: Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nature Communications. 6, 6585 (2015).
Paul, Blair G., Bagby, Sarah C., Czornyj, Elizabeth, Arambula, Diego, Handa, Sumit, Sczyrba, Alexander, Ghosh, Partho, Miller, Jeff F., and Valentine, David L. “Targeted diversity generation by intraterrestrial archaea and archaeal viruses”. Nature Communications 6 (2015): 6585.

12 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey.
Wu L, Gingery M, Abebe M, Arambula D, Czornyj E, Handa S, Khan H, Liu M, Pohlschroder M, Shaw KL, Du A, Guo H, Ghosh P, Miller JF, Zimmerly S., Nucleic Acids Res 46(1), 2018
PMID: 29186518
Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea.
Paul BG, Burstein D, Castelle CJ, Handa S, Arambula D, Czornyj E, Thomas BC, Ghosh P, Miller JF, Banfield JF, Valentine DL., Nat Microbiol 2(), 2017
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van Houte S, Buckling A, Westra ER., Microbiol Mol Biol Rev 80(3), 2016
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