Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T

Persicke M, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C (2015)
Standards in Genomic Sciences 10: 5.

Download
OA
Journal Article | Published | English
Abstract
Abstract Corynebacterium callunae DSM 20147T is a member of the genus Corynebacterium which contains Gram-positive and non-spore forming bacteria with a high G + C content. C. callunae was isolated during a screening for L-glutamic acid producing bacteria and belongs to the aerobic and non-haemolytic corynebacteria. As this is a type strain in a subgroup of industrial relevant bacteria for many of which there are also complete genome sequence available, knowledge of the complete genome sequence might enable genome comparisons to identify production relevant genetic loci. This project, describing the 2.84 Mbp long chromosome and the two plasmids, pCC1 (4.11 kbp) and pCC2 (85.02 kbp), with their 2,647 protein-coding and 82 RNA genes, will aid the Genomic Encyclopedia of Bacteria and Archaea project.
Publishing Year
ISSN
Financial disclosure
Article Processing Charge funded by the Deutsche Forschungsgemeinschaft and the Open Access Publication Fund of Bielefeld University.
PUB-ID

Cite this

Persicke M, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C. Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T. Standards in Genomic Sciences. 2015;10: 5.
Persicke, M., Albersmeier, A., Bednarz, H., Niehaus, K., Kalinowski, J., & Rückert, C. (2015). Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T. Standards in Genomic Sciences, 10: 5.
Persicke, M., Albersmeier, A., Bednarz, H., Niehaus, K., Kalinowski, J., and Rückert, C. (2015). Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T. Standards in Genomic Sciences 10:5.
Persicke, M., et al., 2015. Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T. Standards in Genomic Sciences, 10: 5.
M. Persicke, et al., “Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T”, Standards in Genomic Sciences, vol. 10, 2015, : 5.
Persicke, M., Albersmeier, A., Bednarz, H., Niehaus, K., Kalinowski, J., Rückert, C.: Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T. Standards in Genomic Sciences. 10, : 5 (2015).
Persicke, Marcus, Albersmeier, Andreas, Bednarz, Hanna, Niehaus, Karsten, Kalinowski, Jörn, and Rückert, Christian. “Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T”. Standards in Genomic Sciences 10 (2015): 5.
Main File(s)
Access Level
OA Open Access
Last Uploaded
2016-02-24T12:34:01Z

This data publication is cited in the following publications:
This publication cites the following data publications:

50 References

Data provided by Europe PubMed Central.

Taxonomic studies on coryneform bacteria. V. Classification of coryneform bacteria
AUTHOR UNKNOWN, 1972
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G., Nat. Genet. 25(1), 2000
PMID: 10802651
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.
Liolios K, Chen IM, Mavromatis K, Tavernarakis N, Hugenholtz P, Markowitz VM, Kyrpides NC., Nucleic Acids Res. 38(Database issue), 2010
PMID: 19914934
Viewing and editing assembled sequences using Consed
AUTHOR UNKNOWN, 2003
Consed: a graphical tool for sequence finishing.
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923

AUTHOR UNKNOWN, 0
Prokaryotic gene prediction using GeneMark and GeneMark.hmm
AUTHOR UNKNOWN, 2003
Improved microbial gene identification with GLIMMER.
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL., Nucleic Acids Res. 27(23), 1999
PMID: 10556321
Prodigal: prokaryotic gene recognition and translation initiation site identification.
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ., BMC Bioinformatics 11(), 2010
PMID: 20211023
The National Center for Biotechnology Information's Protein Clusters Database.
Klimke W, Agarwala R, Badretdin A, Chetvernin S, Ciufo S, Fedorov B, Kiryutin B, O'Neill K, Resch W, Resenchuk S, Schafer S, Tolstoy I, Tatusova T., Nucleic Acids Res. 37(Database issue), 2009
PMID: 18940865
CDD: specific functional annotation with the Conserved Domain Database.
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH., Nucleic Acids Res. 37(Database issue), 2009
PMID: 18984618
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW., Nucleic Acids Res. 35(9), 2007
PMID: 17452365
Rfam: annotating non-coding RNAs in complete genomes.
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A., Nucleic Acids Res. 33(Database issue), 2005
PMID: 15608160
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Krogh A, Larsson B, von Heijne G, Sonnhammer EL., J. Mol. Biol. 305(3), 2001
PMID: 11152613
Improved prediction of signal peptides: SignalP 3.0.
Bendtsen JD, Nielsen H, von Heijne G, Brunak S., J. Mol. Biol. 340(4), 2004
PMID: 15223320
Chassis organism from Corynebacterium glutamicum - a top-down approach to identify and delete irrelevant gene clusters
AUTHOR UNKNOWN, 0
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249
Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 for use as a platform strain for basic research and industrial biotechnology.
Baumgart M, Unthan S, Ruckert C, Sivalingam J, Grunberger A, Kalinowski J, Bott M, Noack S, Frunzke J., Appl. Environ. Microbiol. 79(19), 2013
PMID: 23892752

Export

0 Marked Publications

Open Data PUB

Web of Science

View record in Web of Science®

Sources

PMID: 26203323
PubMed | Europe PMC

Search this title in

Google Scholar