The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean

Vinardell JM, Acosta-Jurado S, Göttfert M, Zehner S, Becker A, Baena-Ropero I, Blom J, Crespo-Rivas JC, Goesmann A, Jaenicke S, Krol E, et al. (2015)
Molecular Plant-Microbe Interactions.

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Abstract
Sinorhizobium fredii HH103 is a fast-growing rhizobial strain infecting a broad range of legumes including both American and Asiatic soybeans. In this work we present the sequencing and annotation of the HH103 genome (7.25 Mb), consisting of one chromosome and six plasmids and representing the structurally most complex sinorhizobial genome sequenced so far. Comparative genomic analyses of S. fredii HH103 with strains USDA257 and NGR234 showed that the core genome of these three strains contains 4212 genes (61.7% of the HH103 genes). Synteny plot analysis revealed that the much larger chromosome of USDA257 (6.48 Mb) is co-linear to the HH103 (4.3 Mb) and NGR324 chromosomes (3.9 Mb). An additional region of the USDA257 chromosome of about 2 Mb displays similarity to plasmid pSfHH103e. Remarkable differences exist between HH103 and NGR234 concerning nod genes, flavonoid effect on surface polysaccharide production, and quorum-sensing systems. Furthermore a number of protein secretion systems have been found. Two genes coding for putative type III-secreted effectors not previously described in S. fredii, nopI and gunA, have been located on the HH103 genome. These differences could be important to understand the different symbiotic behaviour of S. fredii strains HH103, USDA257, and NGR234 with soybean.
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Vinardell JM, Acosta-Jurado S, Göttfert M, et al. The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions. 2015.
Vinardell, J. M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., et al. (2015). The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions.
Vinardell, J. M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., Crespo-Rivas, J. C., Goesmann, A., Jaenicke, S., et al. (2015). The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions.
Vinardell, J.M., et al., 2015. The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions.
J.M. Vinardell, et al., “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”, Molecular Plant-Microbe Interactions, 2015.
Vinardell, J.M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., Crespo-Rivas, J.C., Goesmann, A., Jaenicke, S., Krol, E., McIntosh, M., Margaret, I., Pérez-Montaño, F., Schneiker-Bekel, S., Serrania, J., Szczepanowski, R., Buendia-Claveria, A.M., Lloret, J., Bonilla, I., Pühler, A., Ruiz-Sainz, J.E., Weidner, S.: The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions. (2015).
Vinardell, JM, Acosta-Jurado, S, Göttfert, M, Zehner, S, Becker, A, Baena-Ropero, I, Blom, J, Crespo-Rivas, JC, Goesmann, A, Jaenicke, Sebastian, Krol, E, McIntosh, M, Margaret, I, Pérez-Montaño, F, Schneiker-Bekel, Susanne, Serrania, J, Szczepanowski, R, Buendia-Claveria, AM, Lloret, J, Bonilla, I, Pühler, Alfred, Ruiz-Sainz, JE, and Weidner, Stefan. “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”. Molecular Plant-Microbe Interactions (2015).
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NopC Is a Rhizobium-Specific Type 3 Secretion System Effector Secreted by Sinorhizobium (Ensifer) fredii HH103.
Jimenez-Guerrero I, Perez-Montano F, Medina C, Ollero FJ, Lopez-Baena FJ., PLoS ONE 10(11), 2015
PMID: 26569401

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