The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean

Vinardell JM, Acosta-Jurado S, Göttfert M, Zehner S, Becker A, Baena-Ropero I, Blom J, Crespo-Rivas JC, Goesmann A, Jaenicke S, Krol E, et al. (2015)
Molecular Plant-Microbe Interactions 28(7): 811-824.

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Sinorhizobium fredii HH103 is a fast-growing rhizobial strain infecting a broad range of legumes including both American and Asiatic soybeans. In this work we present the sequencing and annotation of the HH103 genome (7.25 Mb), consisting of one chromosome and six plasmids and representing the structurally most complex sinorhizobial genome sequenced so far. Comparative genomic analyses of S. fredii HH103 with strains USDA257 and NGR234 showed that the core genome of these three strains contains 4212 genes (61.7% of the HH103 genes). Synteny plot analysis revealed that the much larger chromosome of USDA257 (6.48 Mb) is co-linear to the HH103 (4.3 Mb) and NGR324 chromosomes (3.9 Mb). An additional region of the USDA257 chromosome of about 2 Mb displays similarity to plasmid pSfHH103e. Remarkable differences exist between HH103 and NGR234 concerning nod genes, flavonoid effect on surface polysaccharide production, and quorum-sensing systems. Furthermore a number of protein secretion systems have been found. Two genes coding for putative type III-secreted effectors not previously described in S. fredii, nopI and gunA, have been located on the HH103 genome. These differences could be important to understand the different symbiotic behaviour of S. fredii strains HH103, USDA257, and NGR234 with soybean.
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Vinardell JM, Acosta-Jurado S, Göttfert M, et al. The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions. 2015;28(7):811-824.
Vinardell, J. M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., et al. (2015). The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions, 28(7), 811-824. doi:10.1094/mpmi-12-14-0397-fi
Vinardell, J. M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., Crespo-Rivas, J. C., Goesmann, A., Jaenicke, S., et al. (2015). The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions 28, 811-824.
Vinardell, J.M., et al., 2015. The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions, 28(7), p 811-824.
J.M. Vinardell, et al., “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”, Molecular Plant-Microbe Interactions, vol. 28, 2015, pp. 811-824.
Vinardell, J.M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., Crespo-Rivas, J.C., Goesmann, A., Jaenicke, S., Krol, E., McIntosh, M., Margaret, I., Pérez-Montaño, F., Schneiker-Bekel, S., Serrania, J., Szczepanowski, R., Buendia-Claveria, A.M., Lloret, J., Bonilla, I., Pühler, A., Ruiz-Sainz, J.E., Weidner, S.: The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions. 28, 811-824 (2015).
Vinardell, JM, Acosta-Jurado, S, Göttfert, M, Zehner, S, Becker, A, Baena-Ropero, I, Blom, J, Crespo-Rivas, JC, Goesmann, A, Jaenicke, Sebastian, Krol, E, McIntosh, M, Margaret, I, Pérez-Montaño, F, Schneiker-Bekel, Susanne, Serrania, J, Szczepanowski, R, Buendia-Claveria, AM, Lloret, J, Bonilla, I, Pühler, Alfred, Ruiz-Sainz, JE, and Weidner, Stefan. “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”. Molecular Plant-Microbe Interactions 28.7 (2015): 811-824.
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12 Citations in Europe PMC

Data provided by Europe PubMed Central.

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Adaptive evolution of rhizobial symbiotic compatibility mediated by co-evolved insertion sequences.
Zhao R, Liu LX, Zhang YZ, Jiao J, Cui WJ, Zhang B, Wang XL, Li ML, Chen Y, Xiong ZQ, Chen WX, Tian CF., ISME J 12(1), 2018
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Transcriptomic Studies of the Effect of nod Gene-Inducing Molecules in Rhizobia: Different Weapons, One Purpose.
Jimenez-Guerrero I, Acosta-Jurado S, Del Cerro P, Navarro-Gomez P, Lopez-Baena FJ, Ollero FJ, Vinardell JM, Perez-Montano F., Genes (Basel) 9(1), 2017
PMID: 29267254
The Sinorhizobium (Ensifer) fredii HH103 Nodulation Outer Protein NopI Is a Determinant for Efficient Nodulation of Soybean and Cowpea Plants.
Jimenez-Guerrero I, Perez-Montano F, Medina C, Ollero FJ, Lopez-Baena FJ., Appl. Environ. Microbiol. 83(5), 2017
PMID: 27986730
Sinorhizobium fredii HH103 Invades Lotus burttii by Crack Entry in a Nod Factor-and Surface Polysaccharide-Dependent Manner.
Acosta-Jurado S, Rodriguez-Navarro DN, Kawaharada Y, Perea JF, Gil-Serrano A, Jin H, An Q, Rodriguez-Carvajal MA, Andersen SU, Sandal N, Stougaard J, Vinardell JM, Ruiz-Sainz JE., Mol. Plant Microbe Interact. 29(12), 2016
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A transcriptomic analysis of the effect of genistein on Sinorhizobium fredii HH103 reveals novel rhizobial genes putatively involved in symbiosis.
Perez-Montano F, Jimenez-Guerrero I, Acosta-Jurado S, Navarro-Gomez P, Ollero FJ, Ruiz-Sainz JE, Lopez-Baena FJ, Vinardell JM., Sci Rep 6(), 2016
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Exopolysaccharide Production by Sinorhizobium fredii HH103 Is Repressed by Genistein in a NodD1-Dependent Manner.
Acosta-Jurado S, Navarro-Gomez P, Murdoch Pdel S, Crespo-Rivas JC, Jie S, Cuesta-Berrio L, Ruiz-Sainz JE, Rodriguez-Carvajal MA, Vinardell JM., PLoS ONE 11(8), 2016
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Bacterial Molecular Signals in the Sinorhizobium fredii-Soybean Symbiosis.
Lopez-Baena FJ, Ruiz-Sainz JE, Rodriguez-Carvajal MA, Vinardell JM., Int J Mol Sci 17(5), 2016
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NopC Is a Rhizobium-Specific Type 3 Secretion System Effector Secreted by Sinorhizobium (Ensifer) fredii HH103.
Jimenez-Guerrero I, Perez-Montano F, Medina C, Ollero FJ, Lopez-Baena FJ., PLoS ONE 10(11), 2015
PMID: 26569401

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