VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications

Brinkrolf C, Janowski SJ, Kormeier B, Lewinski M, Hippe K, Borck D, Hofestädt R (2014)
Journal of Integrative Bioinformatics 11(2).

Journal Article | Published | English

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Abstract
VANESA is a modeling software for the automatic reconstruction and analysis of biological networks based on life-science database information. Using VANESA, scientists are able to model any kind of biological processes and systems as biological networks. It is now possible for scientists to automatically reconstruct important molecular systems with information from the databases KEGG, MINT, IntAct, HPRD, and BRENDA. Additionally, experimental results can be expanded with database information to better analyze the investigated elements and processes in an overall context. Users also have the possibility to use graph theoretical approaches in VANESA to identify regulatory structures and significant actors within the modeled systems. These structures can then be further investigated in the Petri net environment of VANESA. It is platform-independent, free-of-charge, and available at http://vanesa.sf.net.
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Brinkrolf C, Janowski SJ, Kormeier B, et al. VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications. Journal of Integrative Bioinformatics. 2014;11(2).
Brinkrolf, C., Janowski, S. J., Kormeier, B., Lewinski, M., Hippe, K., Borck, D., & Hofestädt, R. (2014). VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications. Journal of Integrative Bioinformatics, 11(2).
Brinkrolf, C., Janowski, S. J., Kormeier, B., Lewinski, M., Hippe, K., Borck, D., and Hofestädt, R. (2014). VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications. Journal of Integrative Bioinformatics 11.
Brinkrolf, C., et al., 2014. VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications. Journal of Integrative Bioinformatics, 11(2).
C. Brinkrolf, et al., “VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications”, Journal of Integrative Bioinformatics, vol. 11, 2014.
Brinkrolf, C., Janowski, S.J., Kormeier, B., Lewinski, M., Hippe, K., Borck, D., Hofestädt, R.: VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications. Journal of Integrative Bioinformatics. 11, (2014).
Brinkrolf, Christoph, Janowski, Sebastian Jan, Kormeier, Benjamin, Lewinski, Martin, Hippe, Klaus, Borck, Daniela, and Hofestädt, Ralf. “VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications”. Journal of Integrative Bioinformatics 11.2 (2014).
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Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future.
Pavlopoulos GA, Malliarakis D, Papanikolaou N, Theodosiou T, Enright AJ, Iliopoulos I., Gigascience 4(), 2015
PMID: 26309733

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