Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T)

Rückert C, Albersmeier A, Al-Dilaimi A, Bednarz H, Niehaus K, Szczepanowski R, Kalinowski J (2013)
Standards in Genomic Sciences 9(3): 505-513.

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Abstract
Corynebacterium terpenotabidum Takeuchi et. al 1999 is a member of the genus Corynebacterium, which contains Gram-positive and non-spore forming bacteria with a high G+C content. C. terpenotabidum was isolated from soil based on its ability to degrade squalene and belongs to the aerobic and non-hemolytic Corynebacteria. It displays tolerance to salts (up to 8%) and is related to Corynebacterium variabile involved in cheese ripening. As this is a type strain of Corynebacterium, this project describing the 2.75 Mbp long chromosome with its 2,369 protein-coding and 72 RNA genes will aid the Genomic Encyclopedia of Bacteria and Archaea project.
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Rückert C, Albersmeier A, Al-Dilaimi A, et al. Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences. 2013;9(3):505-513.
Rückert, C., Albersmeier, A., Al-Dilaimi, A., Bednarz, H., Niehaus, K., Szczepanowski, R., & Kalinowski, J. (2013). Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences, 9(3), 505-513.
Rückert, C., Albersmeier, A., Al-Dilaimi, A., Bednarz, H., Niehaus, K., Szczepanowski, R., and Kalinowski, J. (2013). Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences 9, 505-513.
Rückert, C., et al., 2013. Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences, 9(3), p 505-513.
C. Rückert, et al., “Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T)”, Standards in Genomic Sciences, vol. 9, 2013, pp. 505-513.
Rückert, C., Albersmeier, A., Al-Dilaimi, A., Bednarz, H., Niehaus, K., Szczepanowski, R., Kalinowski, J.: Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences. 9, 505-513 (2013).
Rückert, Christian, Albersmeier, Andreas, Al-Dilaimi, Arwa, Bednarz, Hanna, Niehaus, Karsten, Szczepanowski, Rafael, and Kalinowski, Jörn. “Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T)”. Standards in Genomic Sciences 9.3 (2013): 505-513.
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1 Citation in Europe PMC

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Draft Genome Sequence of Corynebacterium variabile Mu292, Isolated from Munster, a French Smear-Ripened Cheese.
Dugat-Bony E, Sarthou AS, Loux V, Vidal M, Bonnarme P, Irlinger F, Layec S., Genome Announc 4(4), 2016
PMID: 27445372

42 References

Data provided by Europe PubMed Central.

Consed: a graphical tool for sequence finishing.
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
Improved microbial gene identification with GLIMMER.
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL., Nucleic Acids Res. 27(23), 1999
PMID: 10556321
Prodigal: prokaryotic gene recognition and translation initiation site identification.
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ., BMC Bioinformatics 11(), 2010
PMID: 20211023
The National Center for Biotechnology Information's Protein Clusters Database.
Klimke W, Agarwala R, Badretdin A, Chetvernin S, Ciufo S, Fedorov B, Kiryutin B, O'Neill K, Resch W, Resenchuk S, Schafer S, Tolstoy I, Tatusova T., Nucleic Acids Res. 37(Database issue), 2009
PMID: 18940865
CDD: specific functional annotation with the Conserved Domain Database.
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH., Nucleic Acids Res. 37(Database issue), 2009
PMID: 18984618
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW., Nucleic Acids Res. 35(9), 2007
PMID: 17452365

AUTHOR UNKNOWN, 0
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Krogh A, Larsson B, von Heijne G, Sonnhammer EL., J. Mol. Biol. 305(3), 2001
PMID: 11152613
Improved prediction of signal peptides: SignalP 3.0.
Bendtsen JD, Nielsen H, von Heijne G, Brunak S., J. Mol. Biol. 340(4), 2004
PMID: 15223320

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