Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T)
Rückert C, Albersmeier A, Al-Dilaimi A, Bednarz H, Niehaus K, Szczepanowski R, Kalinowski J (2013)
Standards in Genomic Sciences 9(3): 505-513.
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Corynebacterium terpenotabidum Takeuchi et. al 1999 is a member of the genus Corynebacterium, which contains Gram-positive and non-spore forming bacteria with a high G+C content. C. terpenotabidum was isolated from soil based on its ability to degrade squalene and belongs to the aerobic and non-hemolytic Corynebacteria. It displays tolerance to salts (up to 8%) and is related to Corynebacterium variabile involved in cheese ripening. As this is a type strain of Corynebacterium, this project describing the 2.75 Mbp long chromosome with its 2,369 protein-coding and 72 RNA genes will aid the Genomic Encyclopedia of Bacteria and Archaea project.
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Rückert C, Albersmeier A, Al-Dilaimi A, et al. Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences. 2013;9(3):505-513.
Rückert, C., Albersmeier, A., Al-Dilaimi, A., Bednarz, H., Niehaus, K., Szczepanowski, R., & Kalinowski, J. (2013). Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences, 9(3), 505-513. doi:10.4056/sigs.4588337
Rückert, C., Albersmeier, A., Al-Dilaimi, A., Bednarz, H., Niehaus, K., Szczepanowski, R., and Kalinowski, J. (2013). Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences 9, 505-513.
Rückert, C., et al., 2013. Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences, 9(3), p 505-513.
C. Rückert, et al., “Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T)”, Standards in Genomic Sciences, vol. 9, 2013, pp. 505-513.
Rückert, C., Albersmeier, A., Al-Dilaimi, A., Bednarz, H., Niehaus, K., Szczepanowski, R., Kalinowski, J.: Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences. 9, 505-513 (2013).
Rückert, Christian, Albersmeier, Andreas, Al-Dilaimi, Arwa, Bednarz, Hanna, Niehaus, Karsten, Szczepanowski, Rafael, and Kalinowski, Jörn. “Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T)”. Standards in Genomic Sciences 9.3 (2013): 505-513.
This data publication is cited in the following publications:
This publication cites the following data publications:
2 Citations in Europe PMC
Data provided by Europe PubMed Central.
Insight of Genus Corynebacterium: Ascertaining the Role of Pathogenic and Non-pathogenic Species.
Oliveira A, Oliveira LC, Aburjaile F, Benevides L, Tiwari S, Jamal SB, Silva A, Figueiredo HCP, Ghosh P, Portela RW, De Carvalho Azevedo VA, Wattam AR., Front Microbiol 8(), 2017
PMID: 29075239
Oliveira A, Oliveira LC, Aburjaile F, Benevides L, Tiwari S, Jamal SB, Silva A, Figueiredo HCP, Ghosh P, Portela RW, De Carvalho Azevedo VA, Wattam AR., Front Microbiol 8(), 2017
PMID: 29075239
Draft Genome Sequence of Corynebacterium variabile Mu292, Isolated from Munster, a French Smear-Ripened Cheese.
Dugat-Bony E, Sarthou AS, Loux V, Vidal M, Bonnarme P, Irlinger F, Layec S., Genome Announc 4(4), 2016
PMID: 27445372
Dugat-Bony E, Sarthou AS, Loux V, Vidal M, Bonnarme P, Irlinger F, Layec S., Genome Announc 4(4), 2016
PMID: 27445372
42 References
Data provided by Europe PubMed Central.
Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation.
Schroder J, Maus I, Trost E, Tauch A., BMC Genomics 12(), 2011
PMID: 22053731
Schroder J, Maus I, Trost E, Tauch A., BMC Genomics 12(), 2011
PMID: 22053731
Base-calling of automated sequencer traces using phred. II. Error probabilities.
Ewing B, Green P., Genome Res. 8(3), 1998
PMID: 9521922
Ewing B, Green P., Genome Res. 8(3), 1998
PMID: 9521922
Consed: a graphical tool for sequence finishing.
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
AUTHOR UNKNOWN, 0
Base-calling of automated sequencer traces using phred. II. Error probabilities.
Ewing B, Green P., Genome Res. 8(3), 1998
PMID: 9521922
Ewing B, Green P., Genome Res. 8(3), 1998
PMID: 9521922
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
Improved microbial gene identification with GLIMMER.
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL., Nucleic Acids Res. 27(23), 1999
PMID: 10556321
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL., Nucleic Acids Res. 27(23), 1999
PMID: 10556321
Prodigal: prokaryotic gene recognition and translation initiation site identification.
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ., BMC Bioinformatics 11(), 2010
PMID: 20211023
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ., BMC Bioinformatics 11(), 2010
PMID: 20211023
The National Center for Biotechnology Information's Protein Clusters Database.
Klimke W, Agarwala R, Badretdin A, Chetvernin S, Ciufo S, Fedorov B, Kiryutin B, O'Neill K, Resch W, Resenchuk S, Schafer S, Tolstoy I, Tatusova T., Nucleic Acids Res. 37(Database issue), 2009
PMID: 18940865
Klimke W, Agarwala R, Badretdin A, Chetvernin S, Ciufo S, Fedorov B, Kiryutin B, O'Neill K, Resch W, Resenchuk S, Schafer S, Tolstoy I, Tatusova T., Nucleic Acids Res. 37(Database issue), 2009
PMID: 18940865
CDD: specific functional annotation with the Conserved Domain Database.
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH., Nucleic Acids Res. 37(Database issue), 2009
PMID: 18984618
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH., Nucleic Acids Res. 37(Database issue), 2009
PMID: 18984618
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Lowe TM, Eddy SR., Nucleic Acids Res. 25(5), 1997
PMID: 9023104
Lowe TM, Eddy SR., Nucleic Acids Res. 25(5), 1997
PMID: 9023104
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure.
Eddy SR., BMC Bioinformatics 3(), 2002
PMID: 12095421
Eddy SR., BMC Bioinformatics 3(), 2002
PMID: 12095421
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW., Nucleic Acids Res. 35(9), 2007
PMID: 17452365
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW., Nucleic Acids Res. 35(9), 2007
PMID: 17452365
AUTHOR UNKNOWN, 0
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Krogh A, Larsson B, von Heijne G, Sonnhammer EL., J. Mol. Biol. 305(3), 2001
PMID: 11152613
Krogh A, Larsson B, von Heijne G, Sonnhammer EL., J. Mol. Biol. 305(3), 2001
PMID: 11152613
Improved prediction of signal peptides: SignalP 3.0.
Bendtsen JD, Nielsen H, von Heijne G, Brunak S., J. Mol. Biol. 340(4), 2004
PMID: 15223320
Bendtsen JD, Nielsen H, von Heijne G, Brunak S., J. Mol. Biol. 340(4), 2004
PMID: 15223320
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