Alternative splicing at the intersection of biological timing, development, and stress responses

Staiger D, Brown JWS (2013)
The Plant cell 25(10): 3640-3656.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Autor
;
Abstract / Bemerkung
High-throughput sequencing for transcript profiling in plants has revealed that alternative splicing (AS) affects a much higher proportion of the transcriptome than was previously assumed. AS is involved in most plant processes and is particularly prevalent in plants exposed to environmental stress. The identification of mutations in predicted splicing factors and spliceosomal proteins that affect cell fate, the circadian clock, plant defense, and tolerance/sensitivity to abiotic stress all point to a fundamental role of splicing/AS in plant growth, development, and responses to external cues. Splicing factors affect the AS of multiple downstream target genes, thereby transferring signals to alter gene expression via splicing factor/AS networks. The last two to three years have seen an ever-increasing number of examples of functional AS. At a time when the identification of AS in individual genes and at a global level is exploding, this review aims to bring together such examples to illustrate the extent and importance of AS, which are not always obvious from individual publications. It also aims to ensure that plant scientists are aware that AS is likely to occur in the genes that they study and that dynamic changes in AS and its consequences need to be considered routinely.
Erscheinungsjahr
Zeitschriftentitel
The Plant cell
Band
25
Zeitschriftennummer
10
Seite
3640-3656
ISSN
eISSN
PUB-ID

Zitieren

Staiger D, Brown JWS. Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell. 2013;25(10):3640-3656.
Staiger, D., & Brown, J. W. S. (2013). Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell, 25(10), 3640-3656. doi:10.1105/tpc.113.113803
Staiger, D., and Brown, J. W. S. (2013). Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell 25, 3640-3656.
Staiger, D., & Brown, J.W.S., 2013. Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell, 25(10), p 3640-3656.
D. Staiger and J.W.S. Brown, “Alternative splicing at the intersection of biological timing, development, and stress responses”, The Plant cell, vol. 25, 2013, pp. 3640-3656.
Staiger, D., Brown, J.W.S.: Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell. 25, 3640-3656 (2013).
Staiger, Dorothee, and Brown, John W. S. “Alternative splicing at the intersection of biological timing, development, and stress responses”. The Plant cell 25.10 (2013): 3640-3656.

115 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Let there be light: regulation of gene expression in plants.
Petrillo E, Godoy Herz MA, Barta A, Kalyna M, Kornblihtt AR., RNA Biol 11(10), 2014
PMID: 25590224
Alternative splicing during Arabidopsis flower development results in constitutive and stage-regulated isoforms.
Wang H, You C, Chang F, Wang Y, Wang L, Qi J, Ma H., Front Genet 5(), 2014
PMID: 24575124
Interaction of light and temperature signalling.
Franklin KA, Toledo-Ortiz G, Pyott DE, Halliday KJ., J Exp Bot 65(11), 2014
PMID: 24569036
Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially.
Simpson CG, Lewandowska D, Liney M, Davidson D, Chapman S, Fuller J, McNicol J, Shaw P, Brown JW., New Phytol 203(2), 2014
PMID: 24749484
Post-transcriptional regulation in root development.
Stauffer E, Maizel A., Wiley Interdiscip Rev RNA 5(5), 2014
PMID: 24827552
Intron retention in the 5'UTR of the novel ZIF2 transporter enhances translation to promote zinc tolerance in arabidopsis.
Remy E, Cabrito TR, Batista RA, Hussein MA, Teixeira MC, Athanasiadis A, Sá-Correia I, Duque P., PLoS Genet 10(5), 2014
PMID: 24832541
The splicing fate of plant SPO11 genes.
Sprink T, Hartung F., Front Plant Sci 5(), 2014
PMID: 25018755
A new alternative in plant retrograde signaling.
Jung HS, Mockler TC., Genome Biol 15(5), 2014
PMID: 25001637
Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis.
Ding F, Cui P, Wang Z, Zhang S, Ali S, Xiong L., BMC Genomics 15(), 2014
PMID: 24897929
Alternative splicing in plant immunity.
Yang S, Tang F, Zhu H., Int J Mol Sci 15(6), 2014
PMID: 24918296
Emerging functions of alternative splicing coupled with nonsense-mediated decay.
Hamid FM, Makeyev EV., Biochem Soc Trans 42(4), 2014
PMID: 25110020
The conserved PFT1 tandem repeat is crucial for proper flowering in Arabidopsis thaliana.
Rival P, Press MO, Bale J, Grancharova T, Undurraga SF, Queitsch C., Genetics 198(2), 2014
PMID: 25116137
Conservation and functional influence of alternative splicing in wood formation of Populus and Eucalyptus.
Xu P, Kong Y, Song D, Huang C, Li X, Li L., BMC Genomics 15(), 2014
PMID: 25209012

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 24179132
PubMed | Europe PMC

Suchen in

Google Scholar