The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome

Wu H, Qiao J, Blom J, Rückert C, Reva O, Gao X, Borriss R (2013)
Genome announcements 1(6): e00941-13.

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Abstract
The genome of rhizobacterium Bacillus amyloliquefaciens subsp. plantarum strain NAU-B3 is 4,196,170 bp in size and harbors 4,001 genes. Nine giant gene clusters are dedicated to the nonribosomal synthesis of antimicrobial lipopeptides and polyketides. Remarkably, NAU_B3 contains a large inversion within the central portion of the genome.
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Wu H, Qiao J, Blom J, et al. The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements. 2013;1(6):e00941-13.
Wu, H., Qiao, J., Blom, J., Rückert, C., Reva, O., Gao, X., & Borriss, R. (2013). The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements, 1(6), e00941-13.
Wu, H., Qiao, J., Blom, J., Rückert, C., Reva, O., Gao, X., and Borriss, R. (2013). The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements 1, e00941-13.
Wu, H., et al., 2013. The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements, 1(6), p e00941-13.
H. Wu, et al., “The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome”, Genome announcements, vol. 1, 2013, pp. e00941-13.
Wu, H., Qiao, J., Blom, J., Rückert, C., Reva, O., Gao, X., Borriss, R.: The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements. 1, e00941-13 (2013).
Wu, Huijun, Qiao, Junqing, Blom, Jochen, Rückert, Christian, Reva, Oleg, Gao, Xuewen, and Borriss, Rainer. “The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome”. Genome announcements 1.6 (2013): e00941-13.
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16 References

Data provided by Europe PubMed Central.

Use of plant-associated Bacillus strains as biofertilizers and biocontrol agents
Borriss R., 2011
Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons.
Borriss R, Chen XH, Rueckert C, Blom J, Becker A, Baumgarth B, Fan B, Pukall R, Schumann P, Sproer C, Junge H, Vater J, Puhler A, Klenk HP., Int. J. Syst. Evol. Microbiol. 61(Pt 8), 2011
PMID: 20817842
Structural and functional characterization of three polyketide synthase gene clusters in Bacillus amyloliquefaciens FZB 42.
Chen XH, Vater J, Piel J, Franke P, Scholz R, Schneider K, Koumoutsi A, Hitzeroth G, Grammel N, Strittmatter AW, Gottschalk G, Sussmuth RD, Borriss R., J. Bacteriol. 188(11), 2006
PMID: 16707694
Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42.
Chen XH, Koumoutsi A, Scholz R, Eisenreich A, Schneider K, Heinemeyer I, Morgenstern B, Voss B, Hess WR, Reva O, Junge H, Voigt B, Jungblut PR, Vater J, Sussmuth R, Liesegang H, Strittmatter A, Gottschalk G, Borriss R., Nat. Biotechnol. 25(9), 2007
PMID: 17704766
Structural and functional characterization of gene clusters directing nonribosomal synthesis of bioactive cyclic lipopeptides in Bacillus amyloliquefaciens strain FZB42.
Koumoutsi A, Chen XH, Henne A, Liesegang H, Hitzeroth G, Franke P, Vater J, Borriss R., J. Bacteriol. 186(4), 2004
PMID: 14762003
Macrolactin is the polyketide biosynthesis product of the pks2 cluster of Bacillus amyloliquefaciens FZB42.
Schneider K, Chen XH, Vater J, Franke P, Nicholson G, Borriss R, Sussmuth RD., J. Nat. Prod. 70(9), 2007
PMID: 17844999
More than anticipated - production of antibiotics and other secondary metabolites by Bacillus amyloliquefaciens FZB42.
Chen XH, Koumoutsi A, Scholz R, Borriss R., J. Mol. Microbiol. Biotechnol. 16(1-2), 2009
PMID: 18957859
Draft genome sequence of the biocontrol bacterium Bacillus amyloliquefaciens strain M27.
Lee SY, Kim BY, Ahn JH, Song J, Seol YJ, Kim WG, Weon HY., J. Bacteriol. 194(24), 2012
PMID: 23209201
Genome Sequence of a Plant-Associated Bacterium, Bacillus amyloliquefaciens Strain UCMB5036.
Manzoor S, Niazi A, Bejai S, Meijer J, Bongcam-Rudloff E., Genome Announc 1(2), 2013
PMID: 23516223
REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.
Linke B, McHardy AC, Neuweger H, Krause L, Meyer F., Appl. Bioinformatics 5(3), 2006
PMID: 16922601
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369

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