Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation

Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A (2013)
Journal of Biotechnology 168(1): 62-63.

Journal Article | Published | English

No fulltext has been uploaded

Author
; ; ; ; ; ; ; ; ; ;
Abstract
The bacterium Clostridium thermocellum BC1, a thermophilic, anaerobic bacterium of the family Clostridiaceae, was isolated from a compost treatment site in Germany. It is able to grow efficiently on cellulose and cellodextrins. The draft genome sequence of C. thermocellum BC1 has been established and provides the genetic basis for application of this microorganism in thermophilic degradation of cellulosic biomass. (C) 2013 Elsevier B.V. All rights reserved.
Publishing Year
ISSN
PUB-ID

Cite this

Koeck DE, Wibberg D, Koellmeier T, et al. Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology. 2013;168(1):62-63.
Koeck, D. E., Wibberg, D., Koellmeier, T., Blom, J., Jaenicke, S., Winkler, A., Albersmeier, A., et al. (2013). Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology, 168(1), 62-63.
Koeck, D. E., Wibberg, D., Koellmeier, T., Blom, J., Jaenicke, S., Winkler, A., Albersmeier, A., Zverlov, V. V., Pühler, A., Schwarz, W. H., et al. (2013). Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology 168, 62-63.
Koeck, D.E., et al., 2013. Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology, 168(1), p 62-63.
D.E. Koeck, et al., “Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation”, Journal of Biotechnology, vol. 168, 2013, pp. 62-63.
Koeck, D.E., Wibberg, D., Koellmeier, T., Blom, J., Jaenicke, S., Winkler, A., Albersmeier, A., Zverlov, V.V., Pühler, A., Schwarz, W.H., Schlüter, A.: Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology. 168, 62-63 (2013).
Koeck, Daniela E., Wibberg, Daniel, Koellmeier, Tanja, Blom, Jochen, Jaenicke, Sebastian, Winkler, Anika, Albersmeier, Andreas, Zverlov, Vladimir V., Pühler, Alfred, Schwarz, Wolfgang H., and Schlüter, Andreas. “Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation”. Journal of Biotechnology 168.1 (2013): 62-63.
This data publication is cited in the following publications:
This publication cites the following data publications:

8 Citations in Europe PMC

Data provided by Europe PubMed Central.

A kinetics modeling study on the inhibition of glucose on cellulosome of Clostridium thermocellum.
Zhang P, Wang B, Xiao Q, Wu S., Bioresour. Technol. 190(), 2015
PMID: 25919935
Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor.
Hahnke S, Maus I, Wibberg D, Tomazetto G, Puhler A, Klocke M, Schluter A., J. Biotechnol. 193(), 2015
PMID: 25444871
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MF(T.).
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Puhler A, Konig H, Schluter A., J. Biotechnol. 192 Pt A(), 2014
PMID: 25270020
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant.
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Puhler A, Schwarz WH, Schluter A., J. Biotechnol. 188(), 2014
PMID: 25173616
Genomics of cellulolytic bacteria.
Koeck DE, Pechtl A, Zverlov VV, Schwarz WH., Curr. Opin. Biotechnol. 29(), 2014
PMID: 25104562
Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community.
Yuki M, Oshima K, Suda W, Sakamoto M, Kitamura K, Iida T, Hattori M, Ohkuma M., Genome Announc 2(1), 2014
PMID: 24558248

25 References

Data provided by Europe PubMed Central.

Sequence of celQ and properties of celQ, a component of the Clostridium thermocellum cellulosome.
Arai T, Ohara H, Karita S, Kimura T, Sakka K, Ohmiya K., Appl. Microbiol. Biotechnol. 57(5-6), 2001
PMID: 11778875
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249
Small angle X-ray scattering analysis of Clostridium thermocellum cellulosome N-terminal complexes reveals a highly dynamic structure
Currie, J. Biol. Chem. 11(March), 2013
Characterizing the range of extracellular protein post-translational modifications in a cellulose-degrading bacteria using a multiple proteolyic digestion/peptide fragmentation approach
Dykstra, Anal. Chem. 6(), 2013
Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313.
Feinberg L, Foden J, Barrett T, Davenport KW, Bruce D, Detter C, Tapia R, Han C, Lapidus A, Lucas S, Cheng JF, Pitluck S, Woyke T, Ivanova N, Mikhailova N, Land M, Hauser L, Argyros DA, Goodwin L, Hogsett D, Caiazza N., J. Bacteriol. 193(11), 2011
PMID: 21460082
r2cat: synteny plots and comparative assembly.
Husemann P, Stoye J., Bioinformatics 26(4), 2010
PMID: 20015948
Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing
Jaenicke, PLoS ONE 6(), 2011
In vitro reconstitution of the complete Clostridium thermocellum cellulosome and synergistic activity on crystalline cellulose
Kraus, Appl. Environ. Microbiol. 12(), 2012
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor.
Krause L, Diaz NN, Edwards RA, Gartemann KH, Kromeke H, Neuweger H, Puhler A, Runte KJ, Schluter A, Stoye J, Szczepanowski R, Tauch A, Goesmann A., J. Biotechnol. 136(1-2), 2008
PMID: 18611419
Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing.
Krober M, Bekel T, Diaz NN, Goesmann A, Jaenicke S, Krause L, Miller D, Runte KJ, Viehover P, Puhler A, Schluter A., J. Biotechnol. 142(1), 2009
PMID: 19480946
Microbial Cellulose Utilization: Fundamentals and Biotechnology.
Lynd LR, Weimer PJ, van Zyl WH, Pretorius IS., Microbiol. Mol. Biol. Rev. 66(4), 2002
PMID: PMC134660
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
The characteristics of Clostridium thermocellum.
McBEE RH., J. Bacteriol. 67(4), 1954
PMID: 13152068
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
Schluter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann KH, Krahn I, Krause L, Kromeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Puhler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehover P, Goesmann A., J. Biotechnol. 136(1-2), 2008
PMID: 18597880
The cellulosome and cellulose degradation by anaerobic bacteria
Schwarz, Appl. Microbiol. Biotechnol. 56(), 2001
Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing.
Wirth R, Kovacs E, Maroti G, Bagi Z, Rakhely G, Kovacs KL., Biotechnol Biofuels 5(), 2012
PMID: 22673110
Regulated functional alternative splicing in Drosophila.
Venables JP, Tazi J, Juge F., Nucleic Acids Res. 40(1), 2012
PMID: 21908400
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing.
Zakrzewski M, Goesmann A, Jaenicke S, Junemann S, Eikmeyer F, Szczepanowski R, Al-Soud WA, Sorensen S, Puhler A, Schluter A., J. Biotechnol. 158(4), 2012
PMID: 22342600
Duplicated Clostridium thermocellum cellobiohydrolase gene encoding cellulosomal subunits S3 and S5.
Zverlov VV, Velikodvorskaya GA, Schwarz WH, Kellermann J, Staudenbauer WL., Appl. Microbiol. Biotechnol. 51(6), 1999
PMID: 10422230
Chi18A, the endochitinase in the cellulosome of the thermophilic, cellulolytic bacterium Clostridium thermocellum.
Zverlov VV, Fuchs KP, Schwarz WH., Appl. Environ. Microbiol. 68(6), 2002
PMID: 12039789
Hydrolytic bacteria in mesophilic and thermophilic degradation of plant biomass
Zverlov, Eng. Life Sci. 6(), 2010

Export

0 Marked Publications

Open Data PUB

Web of Science

View record in Web of Science®

Sources

PMID: 23968723
PubMed | Europe PMC

Search this title in

Google Scholar