Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100

Schatschneider S, Persicke M, Watt T, Hublik G, Pühler A, Niehaus K, Vorhölter F-J (2013)
Journal of Biotechnology 167(2): 123-134.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Erscheinungsjahr
Zeitschriftentitel
Journal of Biotechnology
Band
167
Zeitschriftennummer
2
Seite
123-134
ISSN
PUB-ID

Zitieren

Schatschneider S, Persicke M, Watt T, et al. Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100. Journal of Biotechnology. 2013;167(2):123-134.
Schatschneider, S., Persicke, M., Watt, T., Hublik, G., Pühler, A., Niehaus, K., & Vorhölter, F. - J. (2013). Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100. Journal of Biotechnology, 167(2), 123-134. doi:10.1016/j.jbiotec.2013.01.023
Schatschneider, S., Persicke, M., Watt, T., Hublik, G., Pühler, A., Niehaus, K., and Vorhölter, F. - J. (2013). Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100. Journal of Biotechnology 167, 123-134.
Schatschneider, S., et al., 2013. Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100. Journal of Biotechnology, 167(2), p 123-134.
S. Schatschneider, et al., “Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100”, Journal of Biotechnology, vol. 167, 2013, pp. 123-134.
Schatschneider, S., Persicke, M., Watt, T., Hublik, G., Pühler, A., Niehaus, K., Vorhölter, F.-J.: Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100. Journal of Biotechnology. 167, 123-134 (2013).
Schatschneider, Sarah, Persicke, Marcus, Watt, Tony, Hublik, Gerd, Pühler, Alfred, Niehaus, Karsten, and Vorhölter, Frank-Jörg. “Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100”. Journal of Biotechnology 167.2 (2013): 123-134.

15 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Insights into metabolic osmoadaptation of the ectoines-producer bacterium Chromohalobacter salexigens through a high-quality genome scale metabolic model.
Piubeli F, Salvador M, Argandoña M, Nieto JJ, Bernal V, Pastor JM, Cánovas M, Vargas C., Microb Cell Fact 17(1), 2018
PMID: 29316921
Network Analyses in Plant Pathogens.
Botero D, Alvarado C, Bernal A, Danies G, Restrepo S., Front Microbiol 9(), 2018
PMID: 29441045
Online measurement of viscosity for biological systems in stirred tank bioreactors.
Schelden M, Lima W, Doerr EW, Wunderlich M, Rehmann L, Büchs J, Regestein L., Biotechnol Bioeng 114(5), 2017
PMID: 27861738
Advances on plant-pathogen interactions from molecular toward systems biology perspectives.
Peyraud R, Dubiella U, Barbacci A, Genin S, Raffaele S, Roby D., Plant J 90(4), 2017
PMID: 27870294
Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.
Alkhateeb RS, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter FJ., J Biotechnol 253(), 2017
PMID: 28506932
Systems and synthetic biology perspective of the versatile plant-pathogenic and polysaccharide-producing bacterium Xanthomonas campestris.
Schatschneider S, Schneider J, Blom J, Létisse F, Niehaus K, Goesmann A, Vorhölter FJ., Microbiology 163(8), 2017
PMID: 28795660
Prospective of Microbial Exopolysaccharide for Heavy Metal Exclusion.
Mohite BV, Koli SH, Narkhede CP, Patil SN, Patil SV., Appl Biochem Biotechnol 183(2), 2017
PMID: 28889346
Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti.
diCenzo GC, Checcucci A, Bazzicalupo M, Mengoni A, Viti C, Dziewit L, Finan TM, Galardini M, Fondi M., Nat Commun 7(), 2016
PMID: 27447951
Genome-scale metabolic reconstruction and constraint-based modelling of the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125.
Fondi M, Maida I, Perrin E, Mellera A, Mocali S, Parrilli E, Tutino ML, Liò P, Fani R., Environ Microbiol 17(3), 2015
PMID: 24889559
Bacterial exopolysaccharides: biosynthesis pathways and engineering strategies.
Schmid J, Sieber V, Rehm B., Front Microbiol 6(), 2015
PMID: 26074894
Systems Biology of Microbial Exopolysaccharides Production.
Ates O., Front Bioeng Biotechnol 3(), 2015
PMID: 26734603
Characterization of the pyrophosphate-dependent 6-phosphofructokinase from Xanthomonas campestris pv. campestris.
Frese M, Schatschneider S, Voss J, Vorhölter FJ, Niehaus K., Arch Biochem Biophys 546(), 2014
PMID: 24508689
Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis.
Schatschneider S, Huber C, Neuweger H, Watt TF, Pühler A, Eisenreich W, Wittmann C, Niehaus K, Vorhölter FJ., Mol Biosyst 10(10), 2014
PMID: 25072918

98 References

Daten bereitgestellt von Europe PubMed Central.

CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.
Schneider J, Vorholter FJ, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A., Genet. Mol. Res. 9(3), 2010
PMID: 20799163
Analysis of optimality in natural and perturbed metabolic networks.
Segre D, Vitkup D, Church GM., Proc. Natl. Acad. Sci. U.S.A. 99(23), 2002
PMID: 12415116
Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data.
Serrania J, Vorholter FJ, Niehaus K, Puhler A, Becker A., J. Biotechnol. 135(3), 2008
PMID: 18538881
The influence of acetyl and pyruvate substituents on the helix-coil transition behaviour of xanthan
Shatwell, Carbohydrate Research 206(), 1990
Towards a genome-scale kinetic model of cellular metabolism.
Smallbone K, Simeonidis E, Swainston N, Mendes P., BMC Syst Biol 4(), 2010
PMID: 20109182
Functional characterization of the Xcs and Xps type II secretion systems from the plant pathogenic bacterium Xanthomonas campestris pv vesicatoria.
Szczesny R, Jordan M, Schramm C, Schulz S, Cogez V, Bonas U, Buttner D., New Phytol. 187(4), 2010
PMID: 20524995
Xanthomonas campestris pv. campestris possesses a single gluconeogenic pathway that is required for virulence.
Tang DJ, He YQ, Feng JX, He BR, Jiang BL, Lu GT, Chen B, Tang JL., J. Bacteriol. 187(17), 2005
PMID: 16109965
Genome sequence of Xanthomonas campestris JX, an industrially productive strain for Xanthan gum.
Tao F, Wang X, Ma C, Yang C, Tang H, Gai Z, Xu P., J. Bacteriol. 194(17), 2012
PMID: 22887662
Xanthomonas campestris pv. campestris (cause of black rot of crucifers) in the genomic era is still a worldwide threat to Brassica crops
Vicente, Molecular Plant Pathology 14(), 2012
The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
Vorholter FJ, Schneiker S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Ruckert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Puhler A., J. Biotechnol. 134(1-2), 2008
PMID: 18304669
Glucose metabolism in Xanthomonas campestris
Whitfield, Journal of General Microbiology 128(), 1982
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model.
Yizhak K, Benyamini T, Liebermeister W, Ruppin E, Shlomi T., Bioinformatics 26(12), 2010
PMID: 20529914
Xanthan induces plant susceptibility by suppressing callose deposition.
Yun MH, Torres PS, El Oirdi M, Rigano LA, Gonzalez-Lamothe R, Marano MR, Castagnaro AP, Dankert MA, Bouarab K, Vojnov AA., Plant Physiol. 141(1), 2006
PMID: 16531487
Comparative glucose catabolism of Xanthomonas species.
Zagallo AC, Wang CH., J. Bacteriol. 93(3), 1967
PMID: 6025434

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 23395674
PubMed | Europe PMC

Suchen in

Google Scholar