Knowledge Environments Representing Molecular Entities for the Virtual Physiological Human

Hofmann-Apitius M, Fluck J, Furlong L, Fornes O, Kolarik C, Hanser S, Boecker M, Schultz S, Sanz F, Klinger R, Mevissen T, et al. (2008)
Philosophical Transactions of the Royal Society A 366(1878): 3091-3110.

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Philosophical Transactions of the Royal Society A
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366
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1878
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3091-3110
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Hofmann-Apitius M, Fluck J, Furlong L, et al. Knowledge Environments Representing Molecular Entities for the Virtual Physiological Human. Philosophical Transactions of the Royal Society A. 2008;366(1878):3091-3110.
Hofmann-Apitius, M., Fluck, J., Furlong, L., Fornes, O., Kolarik, C., Hanser, S., Boecker, M., et al. (2008). Knowledge Environments Representing Molecular Entities for the Virtual Physiological Human. Philosophical Transactions of the Royal Society A, 366(1878), 3091-3110. doi:10.1098/rsta.2008.0099
Hofmann-Apitius, M., Fluck, J., Furlong, L., Fornes, O., Kolarik, C., Hanser, S., Boecker, M., Schultz, S., Sanz, F., Klinger, R., et al. (2008). Knowledge Environments Representing Molecular Entities for the Virtual Physiological Human. Philosophical Transactions of the Royal Society A 366, 3091-3110.
Hofmann-Apitius, M., et al., 2008. Knowledge Environments Representing Molecular Entities for the Virtual Physiological Human. Philosophical Transactions of the Royal Society A, 366(1878), p 3091-3110.
M. Hofmann-Apitius, et al., “Knowledge Environments Representing Molecular Entities for the Virtual Physiological Human”, Philosophical Transactions of the Royal Society A, vol. 366, 2008, pp. 3091-3110.
Hofmann-Apitius, M., Fluck, J., Furlong, L., Fornes, O., Kolarik, C., Hanser, S., Boecker, M., Schultz, S., Sanz, F., Klinger, R., Mevissen, T., Gatterneyer, T., Oliva, B., Friedrich, C.: Knowledge Environments Representing Molecular Entities for the Virtual Physiological Human. Philosophical Transactions of the Royal Society A. 366, 3091-3110 (2008).
Hofmann-Apitius, Martin, Fluck, Juliane, Furlong, Laura, Fornes, Oriol, Kolarik, Corinna, Hanser, Susanne, Boecker, Martin, Schultz, Stefan, Sanz, Ferran, Klinger, Roman, Mevissen, Theo, Gatterneyer, Tobias, Oliva, Baldo, and Friedrich, Christoph. “Knowledge Environments Representing Molecular Entities for the Virtual Physiological Human”. Philosophical Transactions of the Royal Society A 366.1878 (2008): 3091-3110.

9 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine.
Wei CH, Phan L, Feltz J, Maiti R, Hefferon T, Lu Z., Bioinformatics 34(1), 2018
PMID: 28968638
Neuroimaging Feature Terminology: A Controlled Terminology for the Annotation of Brain Imaging Features.
Iyappan A, Younesi E, Redolfi A, Vrooman H, Khanna S, Frisoni GB, Hofmann-Apitius M, Alzheimer’s Disease Neuroimaging Initiative., J Alzheimers Dis 59(4), 2017
PMID: 28731430
LIVIVO - the Vertical Search Engine for Life Sciences.
Müller B, Poley C, Pössel J, Hagelstein A, Gübitz T., Datenbank Spektrum 17(1), 2017
PMID: 29368755
Linking hypothetical knowledge patterns to disease molecular signatures for biomarker discovery in Alzheimer's disease.
Malhotra A, Younesi E, Bagewadi S, Hofmann-Apitius M., Genome Med 6(11), 2014
PMID: 25484918
Text mining in livestock animal science: introducing the potential of text mining to animal sciences.
Sahadevan S, Hofmann-Apitius M, Schellander K, Tesfaye D, Fluck J, Friedrich CM., J Anim Sci 90(10), 2012
PMID: 22665627
@neurIST complex information processing toolchain for the integrated management of cerebral aneurysms.
Villa-Uriol MC, Berti G, Hose DR, Marzo A, Chiarini A, Penrose J, Pozo J, Schmidt JG, Singh P, Lycett R, Larrabide I, Frangi AF., Interface Focus 1(3), 2011
PMID: 22670202
Biana: a software framework for compiling biological interactions and analyzing networks.
Garcia-Garcia J, Guney E, Aragues R, Planas-Iglesias J, Oliva B., BMC Bioinformatics 11(), 2010
PMID: 20105306
@neurIST: infrastructure for advanced disease management through integration of heterogeneous data, computing, and complex processing services.
Benkner S, Arbona A, Berti G, Chiarini A, Dunlop R, Engelbrecht G, Frangi AF, Friedrich CM, Hanser S, Hasselmeyer P, Hose RD, Iavindrasana J, Köhler M, Iacono LL, Lonsdale G, Meyer R, Moore B, Rajasekaran H, Summers PE, Wöhrer A, Wood S., IEEE Trans Inf Technol Biomed 14(6), 2010
PMID: 20435543
Identification of histone modifications in biomedical text for supporting epigenomic research.
Kolárik C, Klinger R, Hofmann-Apitius M., BMC Bioinformatics 10 Suppl 1(), 2009
PMID: 19208128

40 References

Daten bereitgestellt von Europe PubMed Central.

The Biomolecular Interaction Network Database and related tools 2005 update.
Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess E, Buzadzija K, Cavero R, D'Abreo C, Donaldson I, Dorairajoo D, Dumontier MJ, Dumontier MR, Earles V, Farrall R, Feldman H, Garderman E, Gong Y, Gonzaga R, Grytsan V, Gryz E, Gu V, Haldorsen E, Halupa A, Haw R, Hrvojic A, Hurrell L, Isserlin R, Jack F, Juma F, Khan A, Kon T, Konopinsky S, Le V, Lee E, Ling S, Magidin M, Moniakis J, Montojo J, Moore S, Muskat B, Ng I, Paraiso JP, Parker B, Pintilie G, Pirone R, Salama JJ, Sgro S, Shan T, Shu Y, Siew J, Skinner D, Snyder K, Stasiuk R, Strumpf D, Tuekam B, Tao S, Wang Z, White M, Willis R, Wolting C, Wong S, Wrong A, Xin C, Yao R, Yates B, Zhang S, Zheng K, Pawson T, Ouellette BF, Hogue CW., Nucleic Acids Res. 33(Database issue), 2005
PMID: 15608229
PIANA: protein interactions and network analysis.
Aragues R, Jaeggi D, Oliva B., Bioinformatics 22(8), 2006
PMID: 16510498

Aragues, PLoS Comput. Biol. 3(9), 2007
Predicting cancer involvement of genes from heterogeneous data.
Aragues R, Sander C, Oliva B., BMC Bioinformatics 9(), 2008
PMID: 18371197
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data.
Berman H, Henrick K, Nakamura H, Markley JL., Nucleic Acids Res. 35(Database issue), 2006
PMID: 17142228
Systematic meta-analyses of Alzheimer disease genetic association studies: the AlzGene database.
Bertram L, McQueen MB, Mullin K, Blacker D, Tanzi RE., Nat. Genet. 39(1), 2007
PMID: 17192785
The Unified Medical Language System (UMLS): integrating biomedical terminology.
Bodenreider O., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681409
Systems biology in drug discovery.
Butcher EC, Berg EL, Kunkel EJ., Nat. Biotechnol. 22(10), 2004
PMID: 15470465
MINT: the Molecular INTeraction database.
Chatr-aryamontri A, Ceol A, Palazzi LM, Nardelli G, Schneider MV, Castagnoli L, Cesareni G., Nucleic Acids Res. 35(Database issue), 2006
PMID: 17135203
Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships.
Espadaler J, Romero-Isart O, Jackson RM, Oliva B., Bioinformatics 21(16), 2005
PMID: 15961445
Detecting remotely related proteins by their interactions and sequence similarity.
Espadaler J, Aragues R, Eswar N, Marti-Renom MA, Querol E, Aviles FX, Sali A, Oliva B., Proc. Natl. Acad. Sci. U.S.A. 102(20), 2005
PMID: 15883372
Overexpression of Bcl-xL in human breast cancer cells enhances organ-selective lymph node metastasis.
Espana L, Fernandez Y, Rubio N, Torregrosa A, Blanco J, Sierra A., Breast Cancer Res. Treat. 87(1), 2004
PMID: 15377849
OSIRISv1.2: a named entity recognition system for sequence variants of genes in biomedical literature.
Furlong LI, Dach H, Hofmann-Apitius M, Sanz F., BMC Bioinformatics 9(), 2008
PMID: 18251998

AUTHOR UNKNOWN, BMC Bioinformatics 6(), 2005
Synthetic biology--putting engineering into biology.
Heinemann M, Panke S., Bioinformatics 22(22), 2006
PMID: 16954140
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society.
Helmer-Citterich M, Casadio R, Guffanti A, Mauri G, Milanesi L, Pesole G, Valle G, Saccone C., BMC Bioinformatics 6(Suppl 4), 2005
PMID: PMC1866399
Literature mining for the biologist: from information retrieval to biological discovery.
Jensen LJ, Saric J, Bork P., Nat. Rev. Genet. 7(2), 2006
PMID: 16418747
Automated recognition of malignancy mentions in biomedical literature.
Jin Y, McDonald RT, Lerman K, Mandel MA, Carroll S, Liberman MY, Pereira FC, Winters RS, White PS., BMC Bioinformatics 7(), 2006
PMID: 17090325
IntAct--open source resource for molecular interaction data.
Kerrien S, Alam-Faruque Y, Aranda B, Bancarz I, Bridge A, Derow C, Dimmer E, Feuermann M, Friedrichsen A, Huntley R, Kohler C, Khadake J, Leroy C, Liban A, Lieftink C, Montecchi-Palazzi L, Orchard S, Risse J, Robbe K, Roechert B, Thorneycroft D, Zhang Y, Apweiler R, Hermjakob H., Nucleic Acids Res. 35(Database issue), 2006
PMID: 17145710
Identifying gene-specific variations in biomedical text.
Klinger R, Friedrich CM, Mevissen HT, Fluck J, Hofmann-Apitius M, Furlong LI, Sanz F., J Bioinform Comput Biol 5(6), 2007
PMID: 18172929
PrepMS: TOF MS data graphical preprocessing tool.
Karpievitch YV, Hill EG, Smolka AJ, Morris JS, Coombes KR, Baggerly KA, Almeida JS., Bioinformatics 23(2), 2006
PMID: 17121773
The genetics of intracranial aneurysms.
Krischek B, Inoue I., J. Hum. Genet. 51(7), 2006
PMID: 16736093

AUTHOR UNKNOWN, BMC Bioinformatics 6(), 2005
MIPS: analysis and annotation of proteins from whole genomes in 2005.
Mewes HW, Frishman D, Mayer KF, Munsterkotter M, Noubibou O, Pagel P, Rattei T, Oesterheld M, Ruepp A, Stumpflen V., Nucleic Acids Res. 34(Database issue), 2006
PMID: 16381839

AUTHOR UNKNOWN, J INTEL INF SYST 29(), 2007
Human protein reference database as a discovery resource for proteomics.
Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681466
AliBaba: PubMed as a graph.
Plake C, Schiemann T, Pankalla M, Hakenberg J, Leser U., Bioinformatics 22(19), 2006
PMID: 16870931
Experimental approaches to lymphocyte migration in dermatology in vitro and in vivo.
Radeke HH, Ludwig RJ, Boehncke WH., Exp. Dermatol. 14(9), 2005
PMID: 16098125
Protein annotation by EBIMed.
Rebholz-Schuhmann D, Kirsch H, Arregui M, Gaudan S, Rynbeek M, Stoehr P., Nat. Biotechnol. 24(8), 2006
PMID: 16900125
The Database of Interacting Proteins: 2004 update.
Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681454
Functional pathways shared by liver and lung metastases: a mitochondrial chaperone machine is up-regulated in soft-tissue breast cancer metastasis.
Sanz R, Aragues R, Stresing V, Martin B, Landemaine T, Oliva B, Driouch K, Lidereau R, Sierra A., Clin. Exp. Metastasis 24(8), 2007
PMID: 18008173
dbSNP: the NCBI database of genetic variation.
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K., Nucleic Acids Res. 29(1), 2001
PMID: 11125122
BioGRID: a general repository for interaction datasets.
Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M., Nucleic Acids Res. 34(Database issue), 2006
PMID: 16381927
The Universal Protein Resource (UniProt).
UniProt Consortium., Nucleic Acids Res. 35(Database issue), 2006
PMID: 17142230

AUTHOR UNKNOWN, IBM SYST J 43(), 2004

AUTHOR UNKNOWN, Nucleic Acids Res. 1(), 2006

AUTHOR UNKNOWN, BMC Bioinformatics 7(), 2006

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