Computational construction of specialized biological networks

Lee H-M, Dietz K-J, Hofestädt R (2013)
Journal of Bioinformatics and Computational Biology 11(01).

Journal Article | Published | English

No fulltext has been uploaded

Abstract
Today we have access to more than 1500 molecular database systems inside the internet. Based on these databases and information systems, computer scientists developed and implemented different methods for the automatic integration and prediction of biological networks. The idea is to use such methods for the automatic prediction and expansion of rudimentary molecular knowledge. However, the inherent data deficiency problem concerning the properties of specialized network hampers the database- and text-mining-based network construction. This paper presents the concept concerning the computational network expansion, namely for the specific biological network-thiol-disulfide redox regulatory network. Besides, a network-contexted document retrieval system (ncDocReSy) is also introduced to assist the network reduction by providing indirectly relevant literature for user's manual curation. NcDocReSy combines literature search with biological network and ranks the retrieved literature according to the network topology. NcDocReSy is implemented as a Cytoscape plugin.
Publishing Year
ISSN
eISSN
PUB-ID

Cite this

Lee H-M, Dietz K-J, Hofestädt R. Computational construction of specialized biological networks. Journal of Bioinformatics and Computational Biology. 2013;11(01).
Lee, H. - M., Dietz, K. - J., & Hofestädt, R. (2013). Computational construction of specialized biological networks. Journal of Bioinformatics and Computational Biology, 11(01).
Lee, H. - M., Dietz, K. - J., and Hofestädt, R. (2013). Computational construction of specialized biological networks. Journal of Bioinformatics and Computational Biology 11.
Lee, H.-M., Dietz, K.-J., & Hofestädt, R., 2013. Computational construction of specialized biological networks. Journal of Bioinformatics and Computational Biology, 11(01).
H.-M. Lee, K.-J. Dietz, and R. Hofestädt, “Computational construction of specialized biological networks”, Journal of Bioinformatics and Computational Biology, vol. 11, 2013.
Lee, H.-M., Dietz, K.-J., Hofestädt, R.: Computational construction of specialized biological networks. Journal of Bioinformatics and Computational Biology. 11, (2013).
Lee, Hang-Mao, Dietz, Karl-Josef, and Hofestädt, Ralf. “Computational construction of specialized biological networks”. Journal of Bioinformatics and Computational Biology 11.01 (2013).
This data publication is cited in the following publications:
This publication cites the following data publications:

5 References

Data provided by Europe PubMed Central.


Dietz, Physiologia-Plantarum 133(3), 2008
Prediction of reversibly oxidized protein cysteine thiols using protein structure properties.
Sanchez R, Riddle M, Woo J, Momand J., Protein Sci. 17(3), 2008
PMID: 18287280

AUTHOR UNKNOWN, 0

Tsuruoka, England) 27(13), 2011

Hearst, England) 23(16), 2007

Export

0 Marked Publications

Open Data PUB

Web of Science

View record in Web of Science®

Sources

PMID: 23427985
PubMed | Europe PMC

Search this title in

Google Scholar