Complete mitochondrial genome of the aluminum-tolerant fungus Rhodotorula taiwanensis RS1 and comparative analysis of Basidiomycota mitochondrial genomes

Zhao XQ, Aizawa T, Schneider J, Wang C, Shen RF, Sunairi M (2013)
MicrobiologyOpen 2(2): 308-317.

Journal Article | Published | English

No fulltext has been uploaded

Author
; ; ; ; ;
Abstract
The complete mitochondrial genome of Rhodotorula taiwanensis RS1, an aluminum-tolerant Basidiomycota fungus, was determined and compared with the known mitochondrial genomes of 12 Basidiomycota species. The mitochondrial genome of R. taiwanensis RS1 is a circular DNA molecule of 40,392 bp and encodes the typical 15 mitochondrial proteins, 23 tRNAs, and small and large rRNAs as well as 10 intronic open reading frames. These genes are apparently transcribed in two directions and do not show syntenies in gene order with other investigated Basidiomycota species. The average G+C content (41%) of the mitochondrial genome of R. taiwanensis RS1 is the highest among the Basidiomycota species. Two introns were detected in the sequence of the atp9 gene of R. taiwanensis RS1, but not in that of other Basidiomycota species. Rhodotorula taiwanensis is the first species of the genus Rhodotorula whose full mitochondrial genome has been sequenced; and the data presented here supply valuable information for understanding the evolution of fungal mitochondrial genomes and researching the mechanism of aluminum tolerance in microorganisms.
Publishing Year
ISSN
PUB-ID

Cite this

Zhao XQ, Aizawa T, Schneider J, Wang C, Shen RF, Sunairi M. Complete mitochondrial genome of the aluminum-tolerant fungus Rhodotorula taiwanensis RS1 and comparative analysis of Basidiomycota mitochondrial genomes. MicrobiologyOpen. 2013;2(2):308-317.
Zhao, X. Q., Aizawa, T., Schneider, J., Wang, C., Shen, R. F., & Sunairi, M. (2013). Complete mitochondrial genome of the aluminum-tolerant fungus Rhodotorula taiwanensis RS1 and comparative analysis of Basidiomycota mitochondrial genomes. MicrobiologyOpen, 2(2), 308-317.
Zhao, X. Q., Aizawa, T., Schneider, J., Wang, C., Shen, R. F., and Sunairi, M. (2013). Complete mitochondrial genome of the aluminum-tolerant fungus Rhodotorula taiwanensis RS1 and comparative analysis of Basidiomycota mitochondrial genomes. MicrobiologyOpen 2, 308-317.
Zhao, X.Q., et al., 2013. Complete mitochondrial genome of the aluminum-tolerant fungus Rhodotorula taiwanensis RS1 and comparative analysis of Basidiomycota mitochondrial genomes. MicrobiologyOpen, 2(2), p 308-317.
X.Q. Zhao, et al., “Complete mitochondrial genome of the aluminum-tolerant fungus Rhodotorula taiwanensis RS1 and comparative analysis of Basidiomycota mitochondrial genomes”, MicrobiologyOpen, vol. 2, 2013, pp. 308-317.
Zhao, X.Q., Aizawa, T., Schneider, J., Wang, C., Shen, R.F., Sunairi, M.: Complete mitochondrial genome of the aluminum-tolerant fungus Rhodotorula taiwanensis RS1 and comparative analysis of Basidiomycota mitochondrial genomes. MicrobiologyOpen. 2, 308-317 (2013).
Zhao, Xue Qiang, Aizawa, Tomoko, Schneider, Jessica, Wang, Chao, Shen, Ren Fang, and Sunairi, Michio. “Complete mitochondrial genome of the aluminum-tolerant fungus Rhodotorula taiwanensis RS1 and comparative analysis of Basidiomycota mitochondrial genomes”. MicrobiologyOpen 2.2 (2013): 308-317.
This data publication is cited in the following publications:
This publication cites the following data publications:

3 Citations in Europe PMC

Data provided by Europe PubMed Central.

Complete mitochondrial genome of the Verticillium-wilt causing plant pathogen Verticillium nonalfalfae.
Jelen V, de Jonge R, Van de Peer Y, Javornik B, Jakse J., PLoS ONE 11(2), 2016
PMID: 26839950
Intronic and plasmid-derived regions contribute to the large mitochondrial genome sizes of Agaricomycetes.
Himmelstrand K, Olson A, Brandstrom Durling M, Karlsson M, Stenlid J., Curr. Genet. 60(4), 2014
PMID: 25011705
High Rhodotorula sequences in skin transcriptome of patients with diffuse systemic sclerosis.
Arron ST, Dimon MT, Li Z, Johnson ME, A Wood T, Feeney L, G Angeles J, Lafyatis R, Whitfield ML., J. Invest. Dermatol. 134(8), 2014
PMID: 24608988

42 References

Data provided by Europe PubMed Central.

Methods for isolation, phenotypic characterization and maintenance of yeasts
Kurtzman CP, Fell JW, Boekhout T, Robert V., 2011
Aluminum toxicity and astrocyte dysfunction: a metabolic link to neurological disorders.
Lemire J, Appanna VD., J. Inorg. Biochem. 105(11), 2011
PMID: 22099161
The Pfam protein families database.
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, Finn RD., Nucleic Acids Res. 40(Database issue), 2012
PMID: 22127870
Rhodotorula Harrison (1928)
Sampaio JP., 2011
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.
Schattner P, Brooks AN, Lowe TM., Nucleic Acids Res. 33(Web Server issue), 2005
PMID: 15980563
RAPYD--rapid annotation platform for yeast data.
Schneider J, Blom J, Jaenicke S, Linke B, Brinkrolf K, Neuweger H, Tauch A, Goesmann A., J. Biotechnol. 155(1), 2011
PMID: 21040748
Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions.
Scorzetti G, Fell JW, Fonseca A, Statzell-Tallman A., FEMS Yeast Res. 2(4), 2002
PMID: 12702266
Automated generation of heuristics for biological sequence comparison.
Slater GS, Birney E., BMC Bioinformatics 6(), 2005
PMID: 15713233
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S., Mol. Biol. Evol. 28(10), 2011
PMID: 21546353
The crucial role of mitochondrial regulation in adaptive aluminium resistance in Rhodotorula glutinis.
Tani A, Inoue C, Tanaka Y, Yamamoto Y, Kondo H, Hiradate S, Kimbara K, Kawai F., Microbiology (Reading, Engl.) 154(Pt 11), 2008
PMID: 18957597
Evolution of linear chromosomes and multipartite genomes in yeast mitochondria.
Valach M, Farkas Z, Fricova D, Kovac J, Brejova B, Vinar T, Pfeiffer I, Kucsera J, Tomaska L, Lang BF, Nosek J., Nucleic Acids Res. 39(10), 2011
PMID: 21266473
The mitochondrial genome of the Basidiomycete fungus Pleurotus ostreatus (oyster mushroom).
Wang Y, Zeng F, Hon CC, Zhang Y, Leung FC., FEMS Microbiol. Lett. 280(1), 2008
PMID: 18248422
High aluminum tolerance of Rhodotorula sp. RS1 is associated with thickening of the cell wall rather than chelation of aluminum ions
Wang C, Zhao XQ, Aizawa T, Sunairi M, Shen RF., 2013
Aluminum toxicity is associated with mitochondrial dysfunction and the production of reactive oxygen species in plant cells.
Yamamoto Y, Kobayashi Y, Devi SR, Rikiishi S, Matsumoto H., Plant Physiol. 128(1), 2002
PMID: 11788753

Export

0 Marked Publications

Open Data PUB

Web of Science

View record in Web of Science®

Sources

PMID: 23427135
PubMed | Europe PMC

Search this title in

Google Scholar