Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing

Jünemann S, Prior K, Szczepanowski R, Harks I, Ehmke B, Goesmann A, Stoye J, Harmsen D (2012)
PLoS ONE 7(8): e41606.

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Jünemann S, Prior K, Szczepanowski R, et al. Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE. 2012;7(8):e41606.
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., et al. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE, 7(8), e41606. doi:10.1371/journal.pone.0041606
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., and Harmsen, D. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE 7, e41606.
Jünemann, S., et al., 2012. Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE, 7(8), p e41606.
S. Jünemann, et al., “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, vol. 7, 2012, pp. e41606.
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., Harmsen, D.: Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE. 7, e41606 (2012).
Jünemann, Sebastian, Prior, Karola, Szczepanowski, Rafael, Harks, Inga, Ehmke, Benjamin, Goesmann, Alexander, Stoye, Jens, and Harmsen, Dag. “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”. PLoS ONE 7.8 (2012): e41606.
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52 Citations in Europe PMC

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Dental caries from a molecular microbiological perspective.
Nyvad B, Crielaard W, Mira A, Takahashi N, Beighton D., Caries Res 47(2), 2013
PMID: 23207320
Ion Torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method.
Castro TL, Seyffert N, Ramos RT, Barbosa S, Carvalho RD, Pinto AC, Carneiro AR, Silva WM, Pacheco LG, Downson C, Schneider MP, Miyoshi A, Azevedo V, Silva A., Microb Biotechnol 6(2), 2013
PMID: 23316806

18 References

Data provided by Europe PubMed Central.

Specific antibiotics in the treatment of periodontitis--a proposed strategy.
Beikler T, Prior K, Ehmke B, Flemmig TF., J. Periodontol. 75(1), 2004
PMID: 15025229
The human oral microbiome.
Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG., J. Bacteriol. 192(19), 2010
PMID: 20656903
UCHIME improves sensitivity and speed of chimera detection.
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R., Bioinformatics 27(16), 2011
PMID: 21700674
Adjunctive antimicrobial therapy of periodontitis: long-term effects on disease progression and oral colonization.
Ehmke B, Moter A, Beikler T, Milian E, Flemmig TF., J. Periodontol. 76(5), 2005
PMID: 15898936
CORE: a phylogenetically-curated 16S rDNA database of the core oral microbiome.
Griffen AL, Beall CJ, Firestone ND, Gross EL, Difranco JM, Hardman JH, Vriesendorp B, Faust RA, Janies DA, Leys EJ., PLoS ONE 6(4), 2011
PMID: 21544197
A systematic review on the effect of systemic antimicrobials as an adjunct to scaling and root planing in periodontitis patients.
Herrera D, Sanz M, Jepsen S, Needleman I, Roldan S., J. Clin. Periodontol. 29 Suppl 3(), 2002
PMID: 12787214
Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure.
Huber JA, Morrison HG, Huse SM, Neal PR, Sogin ML, Mark Welch DB., Environ. Microbiol. 11(5), 2009
PMID: 19220394
Ironing out the wrinkles in the rare biosphere through improved OTU clustering.
Huse SM, Welch DM, Morrison HG, Sogin ML., Environ. Microbiol. 12(7), 2010
PMID: 20236171
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing.
Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Welch DM, Relman DA, Sogin ML., PLoS Genet. 4(11), 2008
PMID: 19023400
Short pyrosequencing reads suffice for accurate microbial community analysis.
Liu Z, Lozupone C, Hamady M, Bushman FD, Knight R., Nucleic Acids Res. 35(18), 2007
PMID: 17881377
Performance comparison of benchtop high-throughput sequencing platforms.
Loman NJ, Misra RV, Dallman TJ, Constantinidou C, Gharbia SE, Wain J, Pallen MJ., Nat. Biotechnol. 30(5), 2012
PMID: 22522955
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO., Nucleic Acids Res. 35(21), 2007
PMID: 17947321
Are putative periodontal pathogens reliable diagnostic markers?
Riep B, Edesi-Neuss L, Claessen F, Skarabis H, Ehmke B, Flemmig TF, Bernimoulin JP, Gobel UB, Moter A., J. Clin. Microbiol. 47(6), 2009
PMID: 19386852
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF., Appl. Environ. Microbiol. 75(23), 2009
PMID: 19801464
Microbial diversity in the deep sea and the underexplored "rare biosphere".
Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ., Proc. Natl. Acad. Sci. U.S.A. 103(32), 2006
PMID: 16880384
ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.
Sun Y, Cai Y, Liu L, Yu F, Farrell ML, McKendree W, Farmerie W., Nucleic Acids Res. 37(10), 2009
PMID: 19417062
Bacterial flora-typing with targeted, chip-based Pyrosequencing.
Sundquist A, Bigdeli S, Jalili R, Druzin ML, Waller S, Pullen KM, El-Sayed YY, Taslimi MM, Batzoglou S, Ronaghi M., BMC Microbiol. 7(), 2007
PMID: 18047683

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