Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342

De Maayer P, Chan WY, Rezzonico F, Bühlmann A, Venter SN, Blom J, Goesmann A, Frey JE, Smits THM, Duffy B, Coutinho TA (2012)
Journal of Bacteriology 194(6): 1615-1616.

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Abstract
The enterobacterium Pantoea ananatis is an ecologically versatile species. It has been found in the environment, as plant epiphyte and endophyte, as an emerging phytopathogen, and as a presumptive, opportunistic human pathogen. Here, we report the complete genome sequence of P. ananatis LMG 5342, isolated from a human wound.
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De Maayer P, Chan WY, Rezzonico F, et al. Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology. 2012;194(6):1615-1616.
De Maayer, P., Chan, W. Y., Rezzonico, F., Bühlmann, A., Venter, S. N., Blom, J., Goesmann, A., et al. (2012). Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology, 194(6), 1615-1616.
De Maayer, P., Chan, W. Y., Rezzonico, F., Bühlmann, A., Venter, S. N., Blom, J., Goesmann, A., Frey, J. E., Smits, T. H. M., Duffy, B., et al. (2012). Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology 194, 1615-1616.
De Maayer, P., et al., 2012. Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology, 194(6), p 1615-1616.
P. De Maayer, et al., “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”, Journal of Bacteriology, vol. 194, 2012, pp. 1615-1616.
De Maayer, P., Chan, W.Y., Rezzonico, F., Bühlmann, A., Venter, S.N., Blom, J., Goesmann, A., Frey, J.E., Smits, T.H.M., Duffy, B., Coutinho, T.A.: Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology. 194, 1615-1616 (2012).
De Maayer, Pieter, Chan, Wai Yin, Rezzonico, Fabio, Bühlmann, Andreas, Venter, Stephanus N, Blom, Jochen, Goesmann, Alexander, Frey, Jürg E, Smits, Theo H M, Duffy, Brion, and Coutinho, Teresa A. “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”. Journal of Bacteriology 194.6 (2012): 1615-1616.
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17 Citations in Europe PMC

Data provided by Europe PubMed Central.

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Prakash O, Nimonkar Y, Vaishampayan A, Mishra M, Kumbhare S, Josef N, Shouche YS., Int. J. Syst. Evol. Microbiol. 65(10), 2015
PMID: 26297006
Pantoea: insights into a highly versatile and diverse genus within the Enterobacteriaceae.
Walterson AM, Stavrinides J., FEMS Microbiol. Rev. 39(6), 2015
PMID: 26109597
Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis.
De Maayer P, Chan WY, Martin DA, Blom J, Venter SN, Duffy B, Cowan DA, Smits TH, Coutinho TA., Front Microbiol 6(), 2015
PMID: 26106378
Prevalence and characterization of ESBL- and AmpC-producing Enterobacteriaceae on retail vegetables.
van Hoek AH, Veenman C, van Overbeek WM, Lynch G, de Roda Husman AM, Blaak H., Int. J. Food Microbiol. 204(), 2015
PMID: 25828704
Draft Genome Sequences of the Onion Center Rot Pathogen Pantoea ananatis PA4 and Maize Brown Stalk Rot Pathogen P. ananatis BD442.
Weller-Stuart T, Chan WY, Coutinho TA, Venter SN, Smits TH, Duffy B, Goszczynska T, Cowan DA, de Maayer P., Genome Announc 2(4), 2014
PMID: 25103759
Ribosomally encoded antibacterial proteins and peptides from Pseudomonas.
Ghequire MG, De Mot R., FEMS Microbiol. Rev. 38(4), 2014
PMID: 24923764
Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts.
De Maayer P, Chan WY, Rubagotti E, Venter SN, Toth IK, Birch PR, Coutinho TA., BMC Genomics 15(), 2014
PMID: 24884520
Draft Genome Sequence of the Antibiotic-Producing Epiphytic Isolate Pantoea ananatis BRT175.
Smith DD, Kirzinger MW, Stavrinides J., Genome Announc 1(6), 2013
PMID: 24201193
A novel l-isoleucine-4'-dioxygenase and l-isoleucine dihydroxylation cascade in Pantoea ananatis.
Smirnov SV, Sokolov PM, Kotlyarova VA, Samsonova NN, Kodera T, Sugiyama M, Torii T, Hibi M, Shimizu S, Yokozeki K, Ogawa J., Microbiologyopen 2(3), 2013
PMID: 23554367
Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight.
Buhlmann A, Pothier JF, Rezzonico F, Smits TH, Andreou M, Boonham N, Duffy B, Frey JE., J. Microbiol. Methods 92(3), 2013
PMID: 23275135
The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification.
De Maayer P, Chan WY, Blom J, Venter SN, Duffy B, Smits TH, Coutinho TA., BMC Genomics 13(), 2012
PMID: 23151240
Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora.
Rezzonico F, Braun-Kiewnick A, Mann RA, Rodoni B, Goesmann A, Duffy B, Smits TH., Mol. Plant Pathol. 13(8), 2012
PMID: 22583486

14 References

Data provided by Europe PubMed Central.

CRITICA: coding region identification tool invoking comparative analysis.
Badger JH, Olsen GJ, Woese CR., Mol. Biol. Evol. 16(4), 1999
PMID: 10331277
EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom J., 2009
Attempts to classify herbicola group-Enterobacter agglomerans strains by deoxyribonucleic acid hybridization and phenotypic tests
Brenner DJ, Fanning GR, Leete JK, Steigerwalt AG, Krichevsky MI., 1984
Pantoea ananatis: an unconventional plant pathogen.
Coutinho TA, Venter SN., Mol. Plant Pathol. 10(3), 2009
PMID: 19400836
Bacteremic infection with Pantoea ananatis.
De Baere T, Verhelst R, Labit C, Verschraegen G, Wauters G, Claeys G, Vaneechoutte M., J. Clin. Microbiol. 42(9), 2004
PMID: 15365053
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback.
De Maayer P, Chan WY, Venter SN, Toth IK, Birch PR, Joubert F, Coutinho TA., J. Bacteriol. 192(11), 2010
PMID: 20348253
Development of joint application strategies for two microbial gene finders.
McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
PMID: 14988122
Transfer of Erwinia ananas (synonym, Erwinia uredovora) and Erwinia stewartii to the genus Pantoea emend. as (Serrano 1928) comb. nov. and (Smith 1898) comb. nov., respectively, and description of subsp. indologenes subsp. nov. Int.
Mergaert J, Verdonck L, Kersters K., 1993
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Genotypic comparison of Pantoea agglomerans plant and clinical strains.
Rezzonico F, Smits TH, Montesinos E, Frey JE, Duffy B., BMC Microbiol. 9(), 2009
PMID: 19772624
clinical isolates cannot be accurately assigned to species based on metabolic profiling
Rezzonico F, Stockwell VO, Tonolla M, Duffy B, Smits THM., 2011
Microbial gene identification using interpolated Markov models.
Salzberg SL, Delcher AL, Kasif S, White O., Nucleic Acids Res. 26(2), 1998
PMID: 9421513
Metabolic versatility and antibacterial metabolite biosynthesis are distinguishing genomic features of the fire blight antagonist Pantoea vagans C9-1.
Smits TH, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B., PLoS ONE 6(7), 2011
PMID: 21789243

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