Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives

Menzel G, Krebs C, Diez M, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T (2012)
Plant Molecular Biology 78(4-5): 393-405.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
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Abstract / Bemerkung
Genome-wide analyses of repetitive DNA suggest a significant impact particularly of transposable elements on genome size and evolution of virtually all eukaryotic organisms. In this study, we analyzed the abundance and diversity of the hAT transposon superfamily of the sugar beet (B. vulgaris) genome, using molecular, bioinformatic and cytogenetic approaches. We identified 81 transposase-coding sequences, three of which are part of structurally intact but nonfunctional hAT transposons (BvhAT), in a B. vulgaris BAC library as well as in whole genome sequencing-derived data sets. Additionally, 116 complete and 497 truncated non-autonomous BvhAT derivatives lacking the transposase gene were in silico-detected. The 116 complete derivatives were subdivided into four BvhATpin groups each characterized by a distinct terminal inverted repeat motif. Both BvhAT and BvhATpin transposons are specific for species of the genus Beta and closely related species, showing a localization on B. vulgaris chromosomes predominantely in euchromatic regions. The lack of any BvhAT transposase function together with the high degree of degeneration observed for the BvhAT and the BvhATpin genomic fraction contrasts with the abundance and activity of autonomous and non-autonomous hAT transposons revealed in other plant species. This indicates a possible genus-specific structural and functional repression of the hAT transposon superfamily during Beta diversification and evolution.
Erscheinungsjahr
Zeitschriftentitel
Plant Molecular Biology
Band
78
Zeitschriftennummer
4-5
Seite
393-405
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eISSN
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Menzel G, Krebs C, Diez M, et al. Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives. Plant Molecular Biology. 2012;78(4-5):393-405.
Menzel, G., Krebs, C., Diez, M., Holtgräwe, D., Weisshaar, B., Minoche, A. E., Dohm, J. C., et al. (2012). Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives. Plant Molecular Biology, 78(4-5), 393-405. doi:10.1007/s11103-011-9872-z
Menzel, G., Krebs, C., Diez, M., Holtgräwe, D., Weisshaar, B., Minoche, A. E., Dohm, J. C., Himmelbauer, H., and Schmidt, T. (2012). Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives. Plant Molecular Biology 78, 393-405.
Menzel, G., et al., 2012. Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives. Plant Molecular Biology, 78(4-5), p 393-405.
G. Menzel, et al., “Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives”, Plant Molecular Biology, vol. 78, 2012, pp. 393-405.
Menzel, G., Krebs, C., Diez, M., Holtgräwe, D., Weisshaar, B., Minoche, A.E., Dohm, J.C., Himmelbauer, H., Schmidt, T.: Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives. Plant Molecular Biology. 78, 393-405 (2012).
Menzel, Gerhard, Krebs, Carmen, Diez, Mercedes, Holtgräwe, Daniela, Weisshaar, Bernd, Minoche, Andre E., Dohm, Juliane C., Himmelbauer, Heinz, and Schmidt, Thomas. “Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives”. Plant Molecular Biology 78.4-5 (2012): 393-405.

6 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

DNA methylation of retrotransposons, DNA transposons and genes in sugar beet (Beta vulgaris L.).
Zakrzewski F, Schmidt M, Van Lijsebettens M, Schmidt T., Plant J 90(6), 2017
PMID: 28257158
Evolutionary origin of Rosaceae-specific active non-autonomous hAT elements and their contribution to gene regulation and genomic structural variation.
Wang L, Peng Q, Zhao J, Ren F, Zhou H, Wang W, Liao L, Owiti A, Jiang Q, Han Y., Plant Mol Biol 91(1-2), 2016
PMID: 26941188
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Nouroz F, Noreen S, Heslop-Harrison JS., Mol Genet Genomics 290(6), 2015
PMID: 26129767
SBMDb: first whole genome putative microsatellite DNA marker database of sugarbeet for bioenergy and industrial applications.
Iquebal MA, Jaiswal S, Angadi UB, Sablok G, Arora V, Kumar S, Rai A, Kumar D., Database (Oxford) 2015(), 2015
PMID: 26647370
The CHH motif in sugar beet satellite DNA: a modulator for cytosine methylation.
Zakrzewski F, Schubert V, Viehoever P, Minoche AE, Dohm JC, Himmelbauer H, Weisshaar B, Schmidt T., Plant J 78(6), 2014
PMID: 24661787
The diversification and activity of hAT transposons in Musa genomes.
Menzel G, Heitkam T, Seibt KM, Nouroz F, Müller-Stoermer M, Heslop-Harrison JS, Schmidt T., Chromosome Res 22(4), 2014
PMID: 25377178

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