GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database

Kleinbölting N, Huep G, Klotgen A, Viehöver P, Weisshaar B (2012)
Nucleic Acids Research 40(D1): D1211-D1215.

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Abstract / Bemerkung
T-DNA insertion mutants are very valuable for reverse genetics in Arabidopsis thaliana. Several projects have generated large sequence-indexed collections of T-DNA insertion lines, of which GABI-Kat is the second largest resource worldwide. User access to the collection and its Flanking Sequence Tags (FSTs) is provided by the front end SimpleSearch (http://www.GABI-Kat.de). Several significant improvements have been implemented recently. The database now relies on the TAIRv10 genome sequence and annotation dataset. All FSTs have been newly mapped using an optimized procedure that leads to improved accuracy of insertion site predictions. A fraction of the collection with weak FST yield was re-analysed by generating new FSTs. Along with newly found predictions for older sequences about 20 000 new FSTs were included in the database. Information about groups of FSTs pointing to the same insertion site that is found in several lines but is real only in a single line are included, and many problematic FST-to-line links have been corrected using new wet-lab data. SimpleSearch currently contains data from ∼71 000 lines with predicted insertions covering 62.5% of the 27 206 nuclear protein coding genes, and offers insertion allele-specific data from 9545 confirmed lines that are available from the Nottingham Arabidopsis Stock Centre.
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Nucleic Acids Research
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40
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D1
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D1211-D1215
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Kleinbölting N, Huep G, Klotgen A, Viehöver P, Weisshaar B. GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database. Nucleic Acids Research. 2012;40(D1):D1211-D1215.
Kleinbölting, N., Huep, G., Klotgen, A., Viehöver, P., & Weisshaar, B. (2012). GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database. Nucleic Acids Research, 40(D1), D1211-D1215. doi:10.1093/nar/gkr1047
Kleinbölting, N., Huep, G., Klotgen, A., Viehöver, P., and Weisshaar, B. (2012). GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database. Nucleic Acids Research 40, D1211-D1215.
Kleinbölting, N., et al., 2012. GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database. Nucleic Acids Research, 40(D1), p D1211-D1215.
N. Kleinbölting, et al., “GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database”, Nucleic Acids Research, vol. 40, 2012, pp. D1211-D1215.
Kleinbölting, N., Huep, G., Klotgen, A., Viehöver, P., Weisshaar, B.: GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database. Nucleic Acids Research. 40, D1211-D1215 (2012).
Kleinbölting, Nils, Huep, Gunnar, Klotgen, Andreas, Viehöver, Prisca, and Weisshaar, Bernd. “GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database”. Nucleic Acids Research 40.D1 (2012): D1211-D1215.
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Pieczynski M, Wyrzykowska A, Milanowska K, Boguszewska-Mankowska D, Zagdanska B, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z., Plant Biotechnol J 16(2), 2018
PMID: 28718511
Sugar Transporter STP7 Specificity for l-Arabinose and d-Xylose Contrasts with the Typical Hexose Transporters STP8 and STP12.
Rottmann T, Klebl F, Schneider S, Kischka D, Rüscher D, Sauer N, Stadler R., Plant Physiol 176(3), 2018
PMID: 29311272
Accumulation of the coumarin scopolin under abiotic stress conditions is mediated by the Arabidopsis thaliana THO/TREX complex.
Döll S, Kuhlmann M, Rutten T, Mette MF, Scharfenberg S, Petridis A, Berreth DC, Mock HP., Plant J 93(3), 2018
PMID: 29222952
Arabidopsis thaliana FANCD2 Promotes Meiotic Crossover Formation.
Kurzbauer MT, Pradillo M, Kerzendorfer C, Sims J, Ladurner R, Oliver C, Janisiw MP, Mosiolek M, Schweizer D, Copenhaver GP, Schlögelhofer P., Plant Cell 30(2), 2018
PMID: 29352063
Protoplast-Esculin Assay as a New Method to Assay Plant Sucrose Transporters: Characterization of AtSUC6 and AtSUC7 Sucrose Uptake Activity in Arabidopsis Col-0 Ecotype.
Rottmann TM, Fritz C, Lauter A, Schneider S, Fischer C, Danzberger N, Dietrich P, Sauer N, Stadler R., Front Plant Sci 9(), 2018
PMID: 29740457
FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis.
Frost JM, Kim MY, Park GT, Hsieh PH, Nakamura M, Lin SJH, Yoo H, Choi J, Ikeda Y, Kinoshita T, Choi Y, Zilberman D, Fischer RL., Proc Natl Acad Sci U S A 115(20), 2018
PMID: 29712855
CORNICHON sorting and regulation of GLR channels underlie pollen tube Ca2+ homeostasis.
Wudick MM, Portes MT, Michard E, Rosas-Santiago P, Lizzio MA, Nunes CO, Campos C, Santa Cruz Damineli D, Carvalho JC, Lima PT, Pantoja O, Feijó JA., Science 360(6388), 2018
PMID: 29724955
Time-evolving genetic networks reveal a NAC troika that negatively regulates leaf senescence in Arabidopsis.
Kim HJ, Park JH, Kim J, Kim JJ, Hong S, Kim J, Kim JH, Woo HR, Hyeon C, Lim PO, Nam HG, Hwang D., Proc Natl Acad Sci U S A 115(21), 2018
PMID: 29735710
Metabolic reconstructions identify plant 3-methylglutaconyl-CoA hydratase that is crucial for branched-chain amino acid catabolism in mitochondria.
Latimer S, Li Y, Nguyen TTH, Soubeyrand E, Fatihi A, Elowsky CG, Block A, Pichersky E, Basset GJ., Plant J 95(2), 2018
PMID: 29742810
IRE1B degrades RNAs encoding proteins that interfere with the induction of autophagy by ER stress in Arabidopsis thaliana.
Bao Y, Pu Y, Yu X, Gregory BD, Srivastava R, Howell SH, Bassham DC., Autophagy 14(9), 2018
PMID: 29940799
Characterization of filament-forming CTP synthases from Arabidopsis thaliana.
Daumann M, Hickl D, Zimmer D, DeTar RA, Kunz HH, Möhlmann T., Plant J 96(2), 2018
PMID: 30030857
Arabidopsis UMAMIT24 and 25 are amino acid exporters involved in seed loading.
Besnard J, Zhao C, Avice JC, Vitha S, Hyodo A, Pilot G, Okumoto S., J Exp Bot 69(21), 2018
PMID: 30312461
PCP-B class pollen coat proteins are key regulators of the hydration checkpoint in Arabidopsis thaliana pollen-stigma interactions.
Wang L, Clarke LA, Eason RJ, Parker CC, Qi B, Scott RJ, Doughty J., New Phytol 213(2), 2017
PMID: 27596924
Phosphorylation of MAP65-1 by Arabidopsis Aurora Kinases Is Required for Efficient Cell Cycle Progression.
Boruc J, Weimer AK, Stoppin-Mellet V, Mylle E, Kosetsu K, Cedeño C, Jaquinod M, Njo M, De Milde L, Tompa P, Gonzalez N, Inzé D, Beeckman T, Vantard M, Van Damme D., Plant Physiol 173(1), 2017
PMID: 27879390
α2-COP is involved in early secretory traffic in Arabidopsis and is required for plant growth.
Gimeno-Ferrer F, Pastor-Cantizano N, Bernat-Silvestre C, Selvi-Martínez P, Vera-Sirera F, Gao C, Perez-Amador MA, Jiang L, Aniento F, Marcote MJ., J Exp Bot 68(3), 2017
PMID: 28025315
The Arabidopsis N-Acetylornithine Deacetylase Controls Ornithine Biosynthesis via a Linear Pathway with Downstream Effects on Polyamine Levels.
Molesini B, Zanzoni S, Mennella G, Francese G, Losa A, L Rotino G, Pandolfini T., Plant Cell Physiol 58(1), 2017
PMID: 28064246
Small One-Helix Proteins Are Essential for Photosynthesis in Arabidopsis.
Beck J, Lohscheider JN, Albert S, Andersson U, Mendgen KW, Rojas-Stütz MC, Adamska I, Funck D., Front Plant Sci 8(), 2017
PMID: 28167950
Evidence for GABA-Induced Systemic GABA Accumulation in Arabidopsis upon Wounding.
Scholz SS, Malabarba J, Reichelt M, Heyer M, Ludewig F, Mithöfer A., Front Plant Sci 8(), 2017
PMID: 28382046
Genomic and Phenomic Screens for Flower Related RING Type Ubiquitin E3 Ligases in Arabidopsis.
Pavicic M, Mouhu K, Wang F, Bilicka M, Chovanček E, Himanen K., Front Plant Sci 8(), 2017
PMID: 28400782
EXO70C2 Is a Key Regulatory Factor for Optimal Tip Growth of Pollen.
Synek L, Vukašinović N, Kulich I, Hála M, Aldorfová K, Fendrych M, Žárský V., Plant Physiol 174(1), 2017
PMID: 28356503
The preprophase band of microtubules controls the robustness of division orientation in plants.
Schaefer E, Belcram K, Uyttewaal M, Duroc Y, Goussot M, Legland D, Laruelle E, de Tauzia-Moreau ML, Pastuglia M, Bouchez D., Science 356(6334), 2017
PMID: 28408602
RETINOBLASTOMA RELATED1 mediates germline entry in Arabidopsis.
Zhao X, Bramsiepe J, Van Durme M, Komaki S, Prusicki MA, Maruyama D, Forner J, Medzihradszky A, Wijnker E, Harashima H, Lu Y, Schmidt A, Guthörl D, Logroño RS, Guan Y, Pochon G, Grossniklaus U, Laux T, Higashiyama T, Lohmann JU, Nowack MK, Schnittger A., Science 356(6336), 2017
PMID: 28450583
Phosphatidylinositol 3-phosphate-binding protein AtPH1 controls the localization of the metal transporter NRAMP1 in Arabidopsis.
Agorio A, Giraudat J, Bianchi MW, Marion J, Espagne C, Castaings L, Lelièvre F, Curie C, Thomine S, Merlot S., Proc Natl Acad Sci U S A 114(16), 2017
PMID: 28373552
The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status.
Li D, Palanca AMS, Won SY, Gao L, Feng Y, Vashisht AA, Liu L, Zhao Y, Liu X, Wu X, Li S, Le B, Kim YJ, Yang G, Li S, Liu J, Wohlschlegel JA, Guo H, Mo B, Chen X, Law JA., Elife 6(), 2017
PMID: 28452714
Identification of factors required for m6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI.
Růžička K, Zhang M, Campilho A, Bodi Z, Kashif M, Saleh M, Eeckhout D, El-Showk S, Li H, Zhong S, De Jaeger G, Mongan NP, Hejátko J, Helariutta Y, Fray RG., New Phytol 215(1), 2017
PMID: 28503769
The DnaJ-Like Zinc-Finger Protein HCF222 Is Required for Thylakoid Membrane Biogenesis in Plants.
Hartings S, Paradies S, Karnuth B, Eisfeld S, Mehsing J, Wolff C, Levey T, Westhoff P, Meierhoff K., Plant Physiol 174(3), 2017
PMID: 28572458
Light regulation of nitrate reductase by catalytic subunits of protein phosphatase 2A.
Creighton MT, Sanmartín M, Kataya ARA, Averkina IO, Heidari B, Nemie-Feyissa D, Sánchez-Serrano JJ, Lillo C., Planta 246(4), 2017
PMID: 28656346
PLATINUM SENSITIVE 2 LIKE impacts growth, root morphology, seed set, and stress responses.
Kataya ARA, Creighton MT, Napitupulu TP, Sætre C, Heidari B, Ruoff P, Lillo C., PLoS One 12(7), 2017
PMID: 28678890
ZHOUPI and KERBEROS Mediate Embryo/Endosperm Separation by Promoting the Formation of an Extracuticular Sheath at the Embryo Surface.
Moussu S, Doll NM, Chamot S, Brocard L, Creff A, Fourquin C, Widiez T, Nimchuk ZL, Ingram G., Plant Cell 29(7), 2017
PMID: 28696222
Triphosphate Tunnel Metalloenzyme Function in Senescence Highlights a Biological Diversification of This Protein Superfamily.
Ung H, Karia P, Ebine K, Ueda T, Yoshioka K, Moeder W., Plant Physiol 175(1), 2017
PMID: 28733390
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Taniguchi M, Furutani M, Nishimura T, Nakamura M, Fushita T, Iijima K, Baba K, Tanaka H, Toyota M, Tasaka M, Morita MT., Plant Cell 29(8), 2017
PMID: 28765510
Methylation of protein phosphatase 2A-Influence of regulators and environmental stress factors.
Creighton MT, Kolton A, Kataya ARA, Maple-Grødem J, Averkina IO, Heidari B, Lillo C., Plant Cell Environ 40(10), 2017
PMID: 28741704
Dihydrofolate Reductase/Thymidylate Synthase Fine-Tunes the Folate Status and Controls Redox Homeostasis in Plants.
Gorelova V, De Lepeleire J, Van Daele J, Pluim D, Meï C, Cuypers A, Leroux O, Rébeillé F, Schellens JHM, Blancquaert D, Stove CP, Van Der Straeten D., Plant Cell 29(11), 2017
PMID: 28939595
Protein S-Acyltransferase 14: A Specific Role for Palmitoylation in Leaf Senescence in Arabidopsis.
Li Y, Scott R, Doughty J, Grant M, Qi B., Plant Physiol 170(1), 2016
PMID: 26537563
Identification of Arabidopsis GPAT9 (At5g60620) as an Essential Gene Involved in Triacylglycerol Biosynthesis.
Shockey J, Regmi A, Cotton K, Adhikari N, Browse J, Bates PD., Plant Physiol 170(1), 2016
PMID: 26586834
High-throughput microanalysis of large lignocellulosic sample sets by pyrolysis-gas chromatography/mass spectrometry.
Gerber L, Öhman D, Kumar M, Ranocha P, Goffner D, Sundberg B., Physiol Plant 156(2), 2016
PMID: 26477543
MATE Transporter-Dependent Export of Hydroxycinnamic Acid Amides.
Dobritzsch M, Lübken T, Eschen-Lippold L, Gorzolka K, Blum E, Matern A, Marillonnet S, Böttcher C, Dräger B, Rosahl S., Plant Cell 28(2), 2016
PMID: 26744218
"Love Is Strong, and You're so Sweet": JAGGER Is Essential for Persistent Synergid Degeneration and Polytubey Block in Arabidopsis thaliana.
Pereira AM, Nobre MS, Pinto SC, Lopes AL, Costa ML, Masiero S, Coimbra S., Mol Plant 9(4), 2016
PMID: 26774620
Analysis of Block of cell proliferation 1 (BOP1) activity in strawberry and Arabidopsis.
Carvalho SD, Chatterjee M, Coleman L, Clancy MA, Folta KM., Plant Sci 245(), 2016
PMID: 26940494
Xyloglucan Metabolism Differentially Impacts the Cell Wall Characteristics of the Endosperm and Embryo during Arabidopsis Seed Germination.
Sechet J, Frey A, Effroy-Cuzzi D, Berger A, Perreau F, Cueff G, Charif D, Rajjou L, Mouille G, North HM, Marion-Poll A., Plant Physiol 170(3), 2016
PMID: 26826221
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Vrielynck N, Chambon A, Vezon D, Pereira L, Chelysheva L, De Muyt A, Mézard C, Mayer C, Grelon M., Science 351(6276), 2016
PMID: 26917763
High‐throughput microanalysis of large lignocellulosic sample sets by pyrolysis‐gas chromatography/mass spectrometry
Gerber L, Öhman D, Kumar M, Ranocha P, Goffner D, Sundberg B., Physiol Plant 156(2), 2016
PMID: IND604793041
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Siena LA, Ortiz JP, Calderini O, Paolocci F, Cáceres ME, Kaushal P, Grisan S, Pessino SC, Pupilli F., J Exp Bot 67(6), 2016
PMID: 26842983
Balancing of B6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis.
Colinas M, Eisenhut M, Tohge T, Pesquera M, Fernie AR, Weber AP, Fitzpatrick TB., Plant Cell 28(2), 2016
PMID: 26858304
Lipid Droplet-Associated Proteins (LDAPs) Are Required for the Dynamic Regulation of Neutral Lipid Compartmentation in Plant Cells.
Gidda SK, Park S, Pyc M, Yurchenko O, Cai Y, Wu P, Andrews DW, Chapman KD, Dyer JM, Mullen RT., Plant Physiol 170(4), 2016
PMID: 26896396
SOT1, a pentatricopeptide repeat protein with a small MutS-related domain, is required for correct processing of plastid 23S-4.5S rRNA precursors in Arabidopsis thaliana.
Wu W, Liu S, Ruwe H, Zhang D, Melonek J, Zhu Y, Hu X, Gusewski S, Yin P, Small ID, Howell KA, Huang J., Plant J 85(5), 2016
PMID: 26800847
NCP1/AtMOB1A Plays Key Roles in Auxin-Mediated Arabidopsis Development.
Cui X, Guo Z, Song L, Wang Y, Cheng Y., PLoS Genet 12(3), 2016
PMID: 26942722
NORE1/SAUL1 integrates temperature-dependent defense programs involving SGT1b and PAD4 pathways and leaf senescence in Arabidopsis.
Lee IH, Lee IC, Kim J, Kim JH, Chung EH, Kim HJ, Park SJ, Kim YM, Kang SK, Nam HG, Woo HR, Lim PO., Physiol Plant 158(2), 2016
PMID: 26910207
The role of arabinokinase in arabinose toxicity in plants.
Behmüller R, Kavkova E, Düh S, Huber CG, Tenhaken R., Plant J 87(4), 2016
PMID: 27145098
Phenotypes on demand via switchable target protein degradation in multicellular organisms.
Faden F, Ramezani T, Mielke S, Almudi I, Nairz K, Froehlich MS, Höckendorff J, Brandt W, Hoehenwarter W, Dohmen RJ, Schnittger A, Dissmeyer N., Nat Commun 7(), 2016
PMID: 27447739
Polarly localized kinase SGN1 is required for Casparian strip integrity and positioning.
Alassimone J, Fujita S, Doblas VG, van Dop M, Barberon M, Kalmbach L, Vermeer JE, Rojas-Murcia N, Santuari L, Hardtke CS, Geldner N., Nat Plants 2(), 2016
PMID: 27455051
The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis.
Weimer AK, Biedermann S, Harashima H, Roodbarkelari F, Takahashi N, Foreman J, Guan Y, Pochon G, Heese M, Van Damme D, Sugimoto K, Koncz C, Doerner P, Umeda M, Schnittger A., EMBO J 35(19), 2016
PMID: 27497297
The Arabidopsis Iron-Sulfur Protein GRXS17 is a Target of the Ubiquitin E3 Ligases RGLG3 and RGLG4.
Nagels Durand A, Iñigo S, Ritter A, Iniesto E, De Clercq R, Staes A, Van Leene J, Rubio V, Gevaert K, De Jaeger G, Pauwels L, Goossens A., Plant Cell Physiol 57(9), 2016
PMID: 27497447
PIF4 and ELF3 Act Independently in Arabidopsis thaliana Thermoresponsive Flowering.
Press MO, Lanctot A, Queitsch C., PLoS One 11(8), 2016
PMID: 27564448
Methyl Transfer in Glucosinolate Biosynthesis Mediated by Indole Glucosinolate O-Methyltransferase 5.
Pfalz M, Mukhaimar M, Perreau F, Kirk J, Hansen CI, Olsen CE, Agerbirk N, Kroymann J., Plant Physiol 172(4), 2016
PMID: 27810943
Arabidopsis glutaredoxin S17 and its partner, the nuclear factor Y subunit C11/negative cofactor 2α, contribute to maintenance of the shoot apical meristem under long-day photoperiod.
Knuesting J, Riondet C, Maria C, Kruse I, Bécuwe N, König N, Berndt C, Tourrette S, Guilleminot-Montoya J, Herrero E, Gaymard F, Balk J, Belli G, Scheibe R, Reichheld JP, Rouhier N, Rey P., Plant Physiol 167(4), 2015
PMID: 25699589
Involvement of the Putative N-Acetylornithine Deacetylase from Arabidopsis thaliana in Flowering and Fruit Development.
Molesini B, Mennella G, Martini F, Francese G, Pandolfini T., Plant Cell Physiol 56(6), 2015
PMID: 25713174
ATML1 and PDF2 Play a Redundant and Essential Role in Arabidopsis Embryo Development.
Ogawa E, Yamada Y, Sezaki N, Kosaka S, Kondo H, Kamata N, Abe M, Komeda Y, Takahashi T., Plant Cell Physiol 56(6), 2015
PMID: 25766904
Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection.
Garcia-Ruiz H, Carbonell A, Hoyer JS, Fahlgren N, Gilbert KB, Takeda A, Giampetruzzi A, Garcia Ruiz MT, McGinn MG, Lowery N, Martinez Baladejo MT, Carrington JC., PLoS Pathog 11(3), 2015
PMID: 25806948
Repression of jasmonate signaling by a non-TIFY JAZ protein in Arabidopsis.
Thireault C, Shyu C, Yoshida Y, St Aubin B, Campos ML, Howe GA., Plant J 82(4), 2015
PMID: 25846245
TRANSPARENT TESTA 13 is a tonoplast P3A -ATPase required for vacuolar deposition of proanthocyanidins in Arabidopsis thaliana seeds.
Appelhagen I, Nordholt N, Seidel T, Spelt K, Koes R, Quattrochio F, Sagasser M, Weisshaar B., Plant J 82(5), 2015
PMID: 25891958
An unusual xylan in Arabidopsis primary cell walls is synthesised by GUX3, IRX9L, IRX10L and IRX14.
Mortimer JC, Faria-Blanc N, Yu X, Tryfona T, Sorieul M, Ng YZ, Zhang Z, Stott K, Anders N, Dupree P., Plant J 83(3), 2015
PMID: 26043357
Genome-Wide Association Mapping of Fertility Reduction upon Heat Stress Reveals Developmental Stage-Specific QTLs in Arabidopsis thaliana.
Bac-Molenaar JA, Fradin EF, Becker FF, Rienstra JA, van der Schoot J, Vreugdenhil D, Keurentjes JJ., Plant Cell 27(7), 2015
PMID: 26163573
A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis.
Gonzalez N, Pauwels L, Baekelandt A, De Milde L, Van Leene J, Besbrugge N, Heyndrickx KS, Cuéllar Pérez A, Durand AN, De Clercq R, Van De Slijke E, Vanden Bossche R, Eeckhout D, Gevaert K, Vandepoele K, De Jaeger G, Goossens A, Inzé D., Plant Cell 27(8), 2015
PMID: 26232487
SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
Mair A, Pedrotti L, Wurzinger B, Anrather D, Simeunovic A, Weiste C, Valerio C, Dietrich K, Kirchler T, Nägele T, Vicente Carbajosa J, Hanson J, Baena-González E, Chaban C, Weckwerth W, Dröge-Laser W, Teige M., Elife 4(), 2015
PMID: 26263501
Monodehydroascorbate reductase mediates TNT toxicity in plants.
Johnston EJ, Rylott EL, Beynon E, Lorenz A, Chechik V, Bruce NC., Science 349(6252), 2015
PMID: 26339024
Highly Branched Xylan Made by IRREGULAR XYLEM14 and MUCILAGE-RELATED21 Links Mucilage to Arabidopsis Seeds.
Voiniciuc C, Günl M, Schmidt MH, Usadel B., Plant Physiol 169(4), 2015
PMID: 26482889
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Lutz U, Posé D, Pfeifer M, Gundlach H, Hagmann J, Wang C, Weigel D, Mayer KF, Schmid M, Schwechheimer C., PLoS Genet 11(10), 2015
PMID: 26492483
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Kriegel A, Andrés Z, Medzihradszky A, Krüger F, Scholl S, Delang S, Patir-Nebioglu MG, Gute G, Yang H, Murphy AS, Peer WA, Pfeiffer A, Krebs M, Lohmann JU, Schumacher K., Plant Cell 27(12), 2015
PMID: 26589552
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Scholz SS, Reichelt M, Mekonnen DW, Ludewig F, Mithöfer A., Front Plant Sci 6(), 2015
PMID: 26734035
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Bethke G, Grundman RE, Sreekanta S, Truman W, Katagiri F, Glazebrook J., Plant Physiol 164(2), 2014
PMID: 24367018
Photoperiodic control of carbon distribution during the floral transition in Arabidopsis.
Ortiz-Marchena MI, Albi T, Lucas-Reina E, Said FE, Romero-Campero FJ, Cano B, Ruiz MT, Romero JM, Valverde F., Plant Cell 26(2), 2014
PMID: 24563199
MAIN-LIKE1 is a crucial factor for correct cell division and differentiation in Arabidopsis thaliana.
Ühlken C, Horvath B, Stadler R, Sauer N, Weingartner M., Plant J 78(1), 2014
PMID: 24635680
Linking gene expression and membrane lipid composition of Arabidopsis.
Szymanski J, Brotman Y, Willmitzer L, Cuadros-Inostroza Á., Plant Cell 26(3), 2014
PMID: 24642935
A pathway for repair of NAD(P)H in plants.
Colinas M, Shaw HV, Loubéry S, Kaufmann M, Moulin M, Fitzpatrick TB., J Biol Chem 289(21), 2014
PMID: 24706747
The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity.
Kim SH, Son GH, Bhattacharjee S, Kim HJ, Nam JC, Nguyen PD, Hong JC, Gassmann W., Plant J 78(6), 2014
PMID: 24689742
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Appelhagen I, Thiedig K, Nordholt N, Schmidt N, Huep G, Sagasser M, Weisshaar B., Planta 240(5), 2014
PMID: 24903359
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Gibbs DJ, Voß U, Harding SA, Fannon J, Moody LA, Yamada E, Swarup K, Nibau C, Bassel GW, Choudhary A, Lavenus J, Bradshaw SJ, Stekel DJ, Bennett MJ, Coates JC., New Phytol 203(4), 2014
PMID: 24902892
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Müller-Xing R, Clarenz O, Pokorny L, Goodrich J, Schubert D., Plant Cell 26(6), 2014
PMID: 24920331
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Hauck OK, Scharnberg J, Escobar NM, Wanner G, Giavalisco P, Witte CP., Plant Cell 26(7), 2014
PMID: 25052714
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Sánchez-Bermejo E, Castrillo G, del Llano B, Navarro C, Zarco-Fernández S, Martinez-Herrera DJ, Leo-del Puerto Y, Muñoz R, Cámara C, Paz-Ares J, Alonso-Blanco C, Leyva A., Nat Commun 5(), 2014
PMID: 25099865
The Arabidopsis nitrate transporter NRT2.5 plays a role in nitrate acquisition and remobilization in nitrogen-starved plants.
Lezhneva L, Kiba T, Feria-Bourrellier AB, Lafouge F, Boutet-Mercey S, Zoufan P, Sakakibara H, Daniel-Vedele F, Krapp A., Plant J 80(2), 2014
PMID: 25065551
A plant-specific HUA2-LIKE (HULK) gene family in Arabidopsis thaliana is essential for development.
Jali SS, Rosloski SM, Janakirama P, Steffen JG, Zhurov V, Berleth T, Clark RM, Grbic V., Plant J 80(2), 2014
PMID: 25070081
Characterization of Arabidopsis Tubby-like proteins and redundant function of AtTLP3 and AtTLP9 in plant response to ABA and osmotic stress.
Bao Y, Song WM, Jin YL, Jiang CM, Yang Y, Li B, Huang WJ, Liu H, Zhang HX., Plant Mol Biol 86(4-5), 2014
PMID: 25168737
The SWEET family of sugar transporters in grapevine: VvSWEET4 is involved in the interaction with Botrytis cinerea.
Chong J, Piron MC, Meyer S, Merdinoglu D, Bertsch C, Mestre P., J Exp Bot 65(22), 2014
PMID: 25246444
Arabidopsis PIAL1 and 2 promote SUMO chain formation as E4-type SUMO ligases and are involved in stress responses and sulfur metabolism.
Tomanov K, Zeschmann A, Hermkes R, Eifler K, Ziba I, Grieco M, Novatchkova M, Hofmann K, Hesse H, Bachmair A., Plant Cell 26(11), 2014
PMID: 25415977
Arabidopsis wat1 (walls are thin1)-mediated resistance to the bacterial vascular pathogen, Ralstonia solanacearum, is accompanied by cross-regulation of salicylic acid and tryptophan metabolism.
Denancé N, Ranocha P, Oria N, Barlet X, Rivière MP, Yadeta KA, Hoffmann L, Perreau F, Clément G, Maia-Grondard A, van den Berg GC, Savelli B, Fournier S, Aubert Y, Pelletier S, Thomma BP, Molina A, Jouanin L, Marco Y, Goffner D., Plant J 73(2), 2013
PMID: 22978675
Function of calcium-dependent protein kinase CPK28 of Arabidopsis thaliana in plant stem elongation and vascular development.
Matschi S, Werner S, Schulze WX, Legen J, Hilger HH, Romeis T., Plant J 73(6), 2013
PMID: 23252373
Extensive natural epigenetic variation at a de novo originated gene.
Silveira AB, Trontin C, Cortijo S, Barau J, Del Bem LE, Loudet O, Colot V, Vincentz M., PLoS Genet 9(4), 2013
PMID: 23593031
GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana.
Bolle C, Huep G, Kleinbölting N, Haberer G, Mayer K, Leister D, Weisshaar B., Plant J 75(1), 2013
PMID: 23573814
Identification of MAIN, a factor involved in genome stability in the meristems of Arabidopsis thaliana.
Wenig U, Meyer S, Stadler R, Fischer S, Werner D, Lauter A, Melzer M, Hoth S, Weingartner M, Sauer N., Plant J 75(3), 2013
PMID: 23607329
WUSCHEL-responsive At5g65480 interacts with CLAVATA components in vitro and in transient expression.
Gish LA, Gagne JM, Han L, Deyoung BJ, Clark SE., PLoS One 8(6), 2013
PMID: 23776660
Post mortem function of AtMC9 in xylem vessel elements.
Bollhöner B, Zhang B, Stael S, Denancé N, Overmyer K, Goffner D, Van Breusegem F, Tuominen H., New Phytol 200(2), 2013
PMID: 23834670
Arabidopsis phospholipase dδ is involved in basal defense and nonhost resistance to powdery mildew fungi.
Pinosa F, Buhot N, Kwaaitaal M, Fahlberg P, Thordal-Christensen H, Ellerström M, Andersson MX., Plant Physiol 163(2), 2013
PMID: 23979971
Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins.
Savage LJ, Imre KM, Hall DA, Last RL., PLoS One 8(9), 2013
PMID: 24023856
The Arabidopsis calmodulin-like protein, CML39, functions during early seedling establishment.
Bender KW, Rosenbaum DM, Vanderbeld B, Ubaid M, Snedden WA., Plant J 76(4), 2013
PMID: 24033804
SUPPRESSOR OF LLP1 1-mediated C-terminal processing is critical for CLE19 peptide activity.
Tamaki T, Betsuyaku S, Fujiwara M, Fukao Y, Fukuda H, Sawa S., Plant J 76(6), 2013
PMID: 24118638
The CHD3 remodeler PICKLE associates with genes enriched for trimethylation of histone H3 lysine 27.
Zhang H, Bishop B, Ringenberg W, Muir WM, Ogas J., Plant Physiol 159(1), 2012
PMID: 22452853
ERF5 and ERF6 play redundant roles as positive regulators of JA/Et-mediated defense against Botrytis cinerea in Arabidopsis.
Moffat CS, Ingle RA, Wathugala DL, Saunders NJ, Knight H, Knight MR., PLoS One 7(4), 2012
PMID: 22563431
MORC family ATPases required for heterochromatin condensation and gene silencing.
Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, Dekker J, Kim JK, Jacobsen SE., Science 336(6087), 2012
PMID: 22555433
The Arabidopsis ortholog of rice DWARF27 acts upstream of MAX1 in the control of plant development by strigolactones.
Waters MT, Brewer PB, Bussell JD, Smith SM, Beveridge CA., Plant Physiol 159(3), 2012
PMID: 22623516
AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development.
Péret B, Swarup K, Ferguson A, Seth M, Yang Y, Dhondt S, James N, Casimiro I, Perry P, Syed A, Yang H, Reemmer J, Venison E, Howells C, Perez-Amador MA, Yun J, Alonso J, Beemster GT, Laplaze L, Murphy A, Bennett MJ, Nielsen E, Swarup R., Plant Cell 24(7), 2012
PMID: 22773749
Mutation of the cytosolic ribosomal protein-encoding RPS10B gene affects shoot meristematic function in Arabidopsis.
Stirnberg P, Liu JP, Ward S, Kendall SL, Leyser O., BMC Plant Biol 12(), 2012
PMID: 22963533
Pectin biosynthesis: GALS1 in Arabidopsis thaliana is a β-1,4-galactan β-1,4-galactosyltransferase.
Liwanag AJ, Ebert B, Verhertbruggen Y, Rennie EA, Rautengarten C, Oikawa A, Andersen MC, Clausen MH, Scheller HV., Plant Cell 24(12), 2012
PMID: 23243126

13 References

Daten bereitgestellt von Europe PubMed Central.

The Staden package, 1998.
Staden R, Beal KF, Bonfield JK., Methods Mol. Biol. 132(), 2000
PMID: 10547834
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
Arabidopsis Genome Initiative., Nature 408(6814), 2000
PMID: 11130711
Annotation of the Arabidopsis genome.
Wortman JR, Haas BJ, Hannick LI, Smith RK Jr, Maiti R, Ronning CM, Chan AP, Yu C, Ayele M, Whitelaw CA, White OR, Town CD., Plant Physiol. 132(2), 2003
PMID: 12805579
Genome-wide insertional mutagenesis of Arabidopsis thaliana.
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, Parker H, Prednis L, Ansari Y, Choy N, Deen H, Geralt M, Hazari N, Hom E, Karnes M, Mulholland C, Ndubaku R, Schmidt I, Guzman P, Aguilar-Henonin L, Schmid M, Weigel D, Carter DE, Marchand T, Risseeuw E, Brogden D, Zeko A, Crosby WL, Berry CC, Ecker JR., Science 301(5633), 2003
PMID: 12893945
FLAGdb++: a database for the functional analysis of the Arabidopsis genome.
Samson F, Brunaud V, Duchene S, De Oliveira Y, Caboche M, Lecharny A, Aubourg S., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681431
Linking genotype to phenotype using the Arabidopsis unimutant collection.
O'Malley RC, Ecker JR., Plant J. 61(6), 2010
PMID: 20409268
An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics.
Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B., Plant Mol. Biol. 53(1-2), 2003
PMID: 14756321
A new DNA sequence assembly program.
Bonfield JK, Smith K, Staden R., Nucleic Acids Res. 23(24), 1995
PMID: 8559656
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions.
Li Y, Rosso MG, Viehoever P, Weisshaar B., Nucleic Acids Res. 35(Database issue), 2006
PMID: 17062622
The Arabidopsis Information Resource (TAIR): gene structure and function annotation.
Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E., Nucleic Acids Res. 36(Database issue), 2007
PMID: 17986450
High-throughput generation of sequence indexes from T-DNA mutagenized Arabidopsis thaliana lines.
Strizhov N, Li Y, Rosso MG, Viehoever P, Dekker KA, Weisshaar B., BioTechniques 35(6), 2003
PMID: 14682050

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