Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge

Luesken FA, van Alen TA, van der Biezen E, Frijters C, Toonen G, Kampman C, Hendrickx TLG, Zeeman G, Temmink H, Strous M, den Camp HJMO, et al. (2011)
Applied Microbiology and Biotechnology 92(4): 845-854.

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Abstract / Bemerkung
Recently discovered microorganisms affiliated to the bacterial phylum NC10, named "Candidatus Methylomirabilis oxyfera", perform nitrite-dependent anaerobic methane oxidation. These microorganisms could be important players in a novel way of anaerobic wastewater treatment where ammonium and residual dissolved methane might be removed at the expense of nitrate or nitrite. To find suitable inocula for reactor startup, ten selected wastewater treatment plants (WWTPs) located in The Netherlands were screened for the endogenous presence of M. oxyfera using molecular diagnostic methods. We could identify NC10 bacteria with 98% similarity to M. oxyfera in nine out of ten WWTPs tested. Sludge from one selected WWTP was used to start a new enrichment culture of NC10 bacteria. This enrichment was monitored using specific pmoA primers and M. oxyfera cells were visualized with fluorescence oligonucleotide probes. After 112 days, the enrichment consumed up to 0.4 mM NO(2)(-) per day. The results of this study show that appropriate sources of biomass, enrichment strategies, and diagnostic tools existed to start and monitor pilot scale tests for the implementation of nitrite-dependent methane oxidation in wastewater treatment at ambient temperature.
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Zeitschriftentitel
Applied Microbiology and Biotechnology
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92
Zeitschriftennummer
4
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845-854
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Luesken FA, van Alen TA, van der Biezen E, et al. Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge. Applied Microbiology and Biotechnology. 2011;92(4):845-854.
Luesken, F. A., van Alen, T. A., van der Biezen, E., Frijters, C., Toonen, G., Kampman, C., Hendrickx, T. L. G., et al. (2011). Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge. Applied Microbiology and Biotechnology, 92(4), 845-854. doi:10.1007/s00253-011-3361-9
Luesken, F. A., van Alen, T. A., van der Biezen, E., Frijters, C., Toonen, G., Kampman, C., Hendrickx, T. L. G., Zeeman, G., Temmink, H., Strous, M., et al. (2011). Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge. Applied Microbiology and Biotechnology 92, 845-854.
Luesken, F.A., et al., 2011. Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge. Applied Microbiology and Biotechnology, 92(4), p 845-854.
F.A. Luesken, et al., “Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge”, Applied Microbiology and Biotechnology, vol. 92, 2011, pp. 845-854.
Luesken, F.A., van Alen, T.A., van der Biezen, E., Frijters, C., Toonen, G., Kampman, C., Hendrickx, T.L.G., Zeeman, G., Temmink, H., Strous, M., den Camp, H.J.M.O., Jetten, M.S.M.: Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge. Applied Microbiology and Biotechnology. 92, 845-854 (2011).
Luesken, Francisca A., van Alen, Theo A., van der Biezen, Erwin, Frijters, Carla, Toonen, Ger, Kampman, Christel, Hendrickx, Tim L. G., Zeeman, Grietje, Temmink, Hardy, Strous, Marc, den Camp, Huub J. M. Op, and Jetten, Mike S. M. “Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge”. Applied Microbiology and Biotechnology 92.4 (2011): 845-854.

62 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Molecular and stable isotopic evidence for the occurrence of nitrite-dependent anaerobic methane-oxidizing bacteria in the mangrove sediment of Zhangjiang Estuary, China.
Zhang M, Luo Y, Lin L, Lin X, Hetharua B, Zhao W, Zhou M, Zhan Q, Xu H, Zheng T, Tian Y., Appl Microbiol Biotechnol 102(5), 2018
PMID: 29387953
The cycle of nitrogen in river systems: sources, transformation, and flux.
Xia X, Zhang S, Li S, Zhang L, Wang G, Zhang L, Wang J, Li Z., Environ Sci Process Impacts 20(6), 2018
PMID: 29877524
Effect of low concentrations of dissolved oxygen on the activity of denitrifying methanotrophic bacteria.
Kampman C, Piai L, Temmink H, Hendrickx TLG, Zeeman G, Buisman CJN., Water Sci Technol 77(11-12), 2018
PMID: 29944124
Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil.
Bacosa HP, Erdner DL, Rosenheim BE, Shetty P, Seitz KW, Baker BJ, Liu Z., ISME J 12(10), 2018
PMID: 29950702
Bloom of a denitrifying methanotroph, 'Candidatus Methylomirabilis limnetica', in a deep stratified lake.
Graf JS, Mayr MJ, Marchant HK, Tienken D, Hach PF, Brand A, Schubert CJ, Kuypers MMM, Milucka J., Environ Microbiol 20(7), 2018
PMID: 29806730
Response of the Anaerobic Methanotroph "Candidatus Methanoperedens nitroreducens" to Oxygen Stress.
Guerrero-Cruz S, Cremers G, van Alen TA, Op den Camp HJM, Jetten MSM, Rasigraf O, Vaksmaa A., Appl Environ Microbiol 84(24), 2018
PMID: 30291120
Unexpected Diversity and High Abundance of Putative Nitric Oxide Dismutase (Nod) Genes in Contaminated Aquifers and Wastewater Treatment Systems.
Zhu B, Bradford L, Huang S, Szalay A, Leix C, Weissbach M, Táncsics A, Drewes JE, Lueders T., Appl Environ Microbiol 83(4), 2017
PMID: 27986721
Is denitrifying anaerobic methane oxidation-centered technologies a solution for the sustainable operation of wastewater treatment Plants?
Wang D, Wang Y, Liu Y, Ngo HH, Lian Y, Zhao J, Chen F, Yang Q, Zeng G, Li X., Bioresour Technol 234(), 2017
PMID: 28363395
Cultivation of denitrifying anaerobic methane-oxidizing microorganisms in a continuous-flow sponge bioreactor.
Hatamoto M, Sato T, Nemoto S, Yamaguchi T., Appl Microbiol Biotechnol 101(14), 2017
PMID: 28484811
A New Primer to Amplify pmoA Gene From NC10 Bacteria in the Sediments of Dongchang Lake and Dongping Lake.
Wang S, Liu Y, Liu G, Huang Y, Zhou Y., Curr Microbiol 74(8), 2017
PMID: 28501892
AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment.
Pjevac P, Schauberger C, Poghosyan L, Herbold CW, van Kessel MAHJ, Daebeler A, Steinberger M, Jetten MSM, Lücker S, Wagner M, Daims H., Front Microbiol 8(), 2017
PMID: 28824606
Spatial and temporal distribution of nitrite-dependent anaerobic methane-oxidizing bacteria in an intertidal zone of the East China Sea.
Wang J, Shen L, He Z, Hu J, Cai Z, Zheng P, Hu B., Appl Microbiol Biotechnol 101(21), 2017
PMID: 28948330
Improved PCR primers to amplify 16S rRNA genes from NC10 bacteria.
He Z, Wang J, Hu J, Zhang H, Cai C, Shen J, Xu X, Zheng P, Hu B., Appl Microbiol Biotechnol 100(11), 2016
PMID: 27020287
Experimental evaluation of the metabolic reversibility of ANME-2d between anaerobic methane oxidation and methanogenesis.
Ding J, Fu L, Ding ZW, Lu YZ, Cheng SH, Zeng RJ., Appl Microbiol Biotechnol 100(14), 2016
PMID: 27026178
Presence of diverse Candidatus Methylomirabilis oxyfera-like bacteria of NC10 phylum in agricultural soils.
Shen LD, Wu HS, Gao ZQ, Li J, Liu X., J Appl Microbiol 120(6), 2016
PMID: 26932395
Methane dependent denitrification- from ecosystem to laboratory-scale enrichment for engineering applications.
Bhattacharjee AS, Motlagh AM, Jetten MSM, Goel R., Water Res 99(), 2016
PMID: 27176548
Anaerobic methane oxidation coupled to nitrite reduction can be a potential methane sink in coastal environments.
Shen LD, Hu BL, Liu S, Chai XP, He ZF, Ren HX, Liu Y, Geng S, Wang W, Tang JL, Wang YM, Lou LP, Xu XY, Zheng P., Appl Microbiol Biotechnol 100(16), 2016
PMID: 27225473
Ultrastructure and Viral Metagenome of Bacteriophages from an Anaerobic Methane Oxidizing Methylomirabilis Bioreactor Enrichment Culture.
Gambelli L, Cremers G, Mesman R, Guerrero S, Dutilh BE, Jetten MS, Op den Camp HJ, van Niftrik L., Front Microbiol 7(), 2016
PMID: 27877158
Nitrate- and nitrite-dependent anaerobic oxidation of methane.
Welte CU, Rasigraf O, Vaksmaa A, Versantvoort W, Arshad A, Op den Camp HJ, Jetten MS, Lüke C, Reimann J., Environ Microbiol Rep 8(6), 2016
PMID: 27753265
Effect of inoculum sources on the enrichment of nitrite-dependent anaerobic methane-oxidizing bacteria.
He Z, Cai C, Shen L, Lou L, Zheng P, Xu X, Hu B., Appl Microbiol Biotechnol 99(2), 2015
PMID: 25186148
Vertical distribution of nitrite-dependent anaerobic methane-oxidising bacteria in natural freshwater wetland soils.
Shen LD, Huang Q, He ZF, Lian X, Liu S, He YF, Lou LP, Xu XY, Zheng P, Hu BL., Appl Microbiol Biotechnol 99(1), 2015
PMID: 25242345
Biogeographical distribution of denitrifying anaerobic methane oxidizing bacteria in Chinese wetland ecosystems.
Zhu G, Zhou L, Wang Y, Wang S, Guo J, Long XE, Sun X, Jiang B, Hou Q, Jetten MS, Yin C., Environ Microbiol Rep 7(1), 2015
PMID: 25223900
Anaerobic oxidation of methane: an "active" microbial process.
Cui M, Ma A, Qi H, Zhuang X, Zhuang G., Microbiologyopen 4(1), 2015
PMID: 25530008
Enrichment and activity of methanotrophic microorganisms from municipal wastewater sludge.
Siniscalchi LA, Vale IC, Dell'Isola J, Chernicharo CA, Calabria Araujo J., Environ Technol 36(9-12), 2015
PMID: 25495866
A Comprehensive Review of Aliphatic Hydrocarbon Biodegradation by Bacteria.
Abbasian F, Lockington R, Mallavarapu M, Naidu R., Appl Biochem Biotechnol 176(3), 2015
PMID: 25935219
Anaerobic Oxidation of Methane Coupled to Nitrite Reduction by Halophilic Marine NC10 Bacteria.
He Z, Geng S, Cai C, Liu S, Liu Y, Pan Y, Lou L, Zheng P, Xu X, Hu B., Appl Environ Microbiol 81(16), 2015
PMID: 26048927
New primers for detecting and quantifying denitrifying anaerobic methane oxidation archaea in different ecological niches.
Ding J, Ding ZW, Fu L, Lu YZ, Cheng SH, Zeng RJ., Appl Microbiol Biotechnol 99(22), 2015
PMID: 26300291
Complete nitrification by a single microorganism.
van Kessel MA, Speth DR, Albertsen M, Nielsen PH, Op den Camp HJ, Kartal B, Jetten MS, Lücker S., Nature 528(7583), 2015
PMID: 26610025
Distribution and diversity of nitrite-dependent anaerobic methane-oxidising bacteria in the sediments of the Qiantang River.
Shen LD, Liu S, Zhu Q, Li XY, Cai C, Cheng DQ, Lou LP, Xu XY, Zheng P, Hu BL., Microb Ecol 67(2), 2014
PMID: 24272281
Coexistence of nitrifying, anammox and denitrifying bacteria in a sequencing batch reactor.
Langone M, Yan J, Haaijer SC, Op den Camp HJ, Jetten MS, Andreottola G., Front Microbiol 5(), 2014
PMID: 24550899
Molecular evidence for nitrite-dependent anaerobic methane-oxidising bacteria in the Jiaojiang Estuary of the East Sea (China).
Li-Dong S, Qun Z, Shuai L, Ping D, Jiang-Ning Z, Dong-Qing C, Xiang-Yang X, Ping Z, Bao-Lan H., Appl Microbiol Biotechnol 98(11), 2014
PMID: 24515728
Evidence for nitrite-dependent anaerobic methane oxidation as a previously overlooked microbial methane sink in wetlands.
Hu BL, Shen LD, Lian X, Zhu Q, Liu S, Huang Q, He ZF, Geng S, Cheng DQ, Lou LP, Xu XY, Zheng P, He YF., Proc Natl Acad Sci U S A 111(12), 2014
PMID: 24616523
High specific activity for anammox bacteria enriched from activated sludge at 10°C.
Hendrickx TL, Kampman C, Zeeman G, Temmink H, Hu Z, Kartal B, Buisman CJ., Bioresour Technol 163(), 2014
PMID: 24814247
Enrichment of denitrifying methanotrophic bacteria from municipal wastewater sludge in a membrane bioreactor at 20°C.
Kampman C, Temmink H, Hendrickx TL, Zeeman G, Buisman CJ., J Hazard Mater 274(), 2014
PMID: 24809733
Cultivation of nitrite-dependent anaerobic methane-oxidizing bacteria: impact of reactor configuration.
Hu B, He Z, Geng S, Cai C, Lou L, Zheng P, Xu X., Appl Microbiol Biotechnol 98(18), 2014
PMID: 24880628
Simultaneous enrichment of denitrifying methanotrophs and anammox bacteria.
Ding ZW, Ding J, Fu L, Zhang F, Zeng RJ., Appl Microbiol Biotechnol 98(24), 2014
PMID: 25056292
Evidence for the cooccurrence of nitrite-dependent anaerobic ammonium and methane oxidation processes in a flooded paddy field.
Shen LD, Liu S, Huang Q, Lian X, He ZF, Geng S, Jin RC, He YF, Lou LP, Xu XY, Zheng P, Hu BL., Appl Environ Microbiol 80(24), 2014
PMID: 25261523
Anaerobic methane oxidation coupled to denitrification is the dominant methane sink in a deep lake.
Deutzmann JS, Stief P, Brandes J, Schink B., Proc Natl Acad Sci U S A 111(51), 2014
PMID: 25472842
Enrichment of denitrifying methane-oxidizing microorganisms using up-flow continuous reactors and batch cultures.
Hatamoto M, Kimura M, Sato T, Koizumi M, Takahashi M, Kawakami S, Araki N, Yamaguchi T., PLoS One 9(12), 2014
PMID: 25545013
Revisiting methanotrophic communities in sewage treatment plants.
Ho A, Vlaeminck SE, Ettwig KF, Schneider B, Frenzel P, Boon N., Appl Environ Microbiol 79(8), 2013
PMID: 23417005
Effect of oxygen on the anaerobic methanotroph 'Candidatus Methylomirabilis oxyfera': kinetic and transcriptional analysis.
Luesken FA, Wu ML, Op den Camp HJ, Keltjens JT, Stunnenberg H, Francoijs KJ, Strous M, Jetten MS., Environ Microbiol 14(4), 2012
PMID: 22221911
Microbiology, ecology, and application of the nitrite-dependent anaerobic methane oxidation process.
Shen LD, He ZF, Zhu Q, Chen DQ, Lou LP, Xu XY, Zheng P, Hu BL., Front Microbiol 3(), 2012
PMID: 22905032
Co-occurrence and distribution of nitrite-dependent anaerobic ammonium and methane-oxidizing bacteria in a paddy soil.
Wang Y, Zhu G, Harhangi HR, Zhu B, Jetten MS, Yin C, Op den Camp HJ., FEMS Microbiol Lett 336(2), 2012
PMID: 22889245
Rare branched fatty acids characterize the lipid composition of the intra-aerobic methane oxidizer "Candidatus Methylomirabilis oxyfera".
Kool DM, Zhu B, Rijpstra WI, Jetten MS, Ettwig KF, Sinninghe Damsté JS., Appl Environ Microbiol 78(24), 2012
PMID: 23042164
Anaerobic oxidization of methane in a minerotrophic peatland: enrichment of nitrite-dependent methane-oxidizing bacteria.
Zhu B, van Dijk G, Fritz C, Smolders AJ, Pol A, Jetten MS, Ettwig KF., Appl Environ Microbiol 78(24), 2012
PMID: 23042166
Combined anaerobic ammonium and methane oxidation for nitrogen and methane removal.
Zhu B, Sánchez J, van Alen TA, Sanabria J, Jetten MS, Ettwig KF, Kartal B., Biochem Soc Trans 39(6), 2011
PMID: 22103533

23 References

Daten bereitgestellt von Europe PubMed Central.

Anaerobic and complementary treatment of domestic sewage in regions with hot climates--a review.
Aiyuk S, Forrez I, Lieven de K, van Haandel A, Verstraete W., Bioresour. Technol. 97(17), 2005
PMID: 16055328
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations.
Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA., Appl. Environ. Microbiol. 56(6), 1990
PMID: 2200342
Phylogenetic identification and in situ detection of individual microbial cells without cultivation.
Amann RI, Ludwig W, Schleifer KH., Microbiol. Rev. 59(1), 1995
PMID: 7535888
Mitigation of global greenhouse gas emissions from waste: conclusions and strategies from the Intergovernmental Panel on Climate Change (IPCC) Fourth Assessment Report. Working Group III (Mitigation).
Bogner J, Pipatti R, Hashimoto S, Diaz C, Mareckova K, Diaz L, Kjeldsen P, Monni S, Faaij A, Gao Q, Zhang T, Ahmed MA, Sutamihardja RT, Gregory R; Intergovernmental Panel on Climate Change (IPCC) Working Group III (Mitigation)., Waste Manag Res 26(1), 2008
PMID: 18338699
Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea.
Ettwig KF, Shima S, van de Pas-Schoonen KT, Kahnt J, Medema MH, Op den Camp HJ, Jetten MS, Strous M., Environ. Microbiol. 10(11), 2008
PMID: 18721142
Enrichment and molecular detection of denitrifying methanotrophic bacteria of the NC10 phylum.
Ettwig KF, van Alen T, van de Pas-Schoonen KT, Jetten MS, Strous M., Appl. Environ. Microbiol. 75(11), 2009
PMID: 19329658
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria.
Ettwig KF, Butler MK, Le Paslier D, Pelletier E, Mangenot S, Kuypers MM, Schreiber F, Dutilh BE, Zedelius J, de Beer D, Gloerich J, Wessels HJ, van Alen T, Luesken F, Wu ML, van de Pas-Schoonen KT, Op den Camp HJ, Janssen-Megens EM, Francoijs KJ, Stunnenberg H, Weissenbach J, Jetten MS, Strous M., Nature 464(7288), 2010
PMID: 20336137
Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related.
Holmes AJ, Costello A, Lidstrom ME, Murrell JC., FEMS Microbiol. Lett. 132(3), 1995
PMID: 7590173
Enrichment of denitrifying anaerobic methane oxidizing microorganisms
Hu S, Zeng RJ, Burow LC, Lant P, Keller J, Yuan Z., 2009
Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations.
Juretschko S, Timmermann G, Schmid M, Schleifer KH, Pommerening-Roser A, Koops HP, Wagner M., Appl. Environ. Microbiol. 64(8), 1998
PMID: 9687471
Adaptation of a freshwater anammox population to high salinity wastewater.
Kartal B, Koleva M, Arsov R, van der Star W, Jetten MS, Strous M., J. Biotechnol. 126(4), 2006
PMID: 16806555
Use of the upflow sludge blanket (USB) reactor concept for biological wastewater-treatment, especially for anaerobic treatment
Lettinga G, Velsen AFM, Hobma SW, Dezeeuw W, Klapwijk A., 1980

AUTHOR UNKNOWN, 0
A microbial consortium couples anaerobic methane oxidation to denitrification.
Raghoebarsing AA, Pol A, van de Pas-Schoonen KT, Smolders AJ, Ettwig KF, Rijpstra WI, Schouten S, Damste JS, Op den Camp HJ, Jetten MS, Strous M., Nature 440(7086), 2006
PMID: 16612380
Protein extraction from activated sludge: an analytical approach.
Ras M, Girbal-Neuhauser E, Paul E, Sperandio M, Lefebvre D., Water Res. 42(8-9), 2007
PMID: 18067947
The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms
Strous M, Heijnen JJ, Kuenen JG, Jetten MSM., 1998
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.
Tamura K, Dudley J, Nei M, Kumar S., Mol. Biol. Evol. 24(8), 2007
PMID: 17488738
Anaerobic digestion. I. Microbiology of anaerobic digestion
Toerien DF, Hattingh WH., 1969
The SHARON-Anammox process for treatment of ammonium rich wastewater.
van Dongen U, Jetten MS, van Loosdrecht MC., Water Sci. Technol. 44(1), 2001
PMID: 11496667

Haandel AC, Lettinga G., 1994
A new intra-aerobic metabolism in the nitrite-dependent anaerobic methane-oxidizing bacterium Candidatus 'Methylomirabilis oxyfera'.
Wu ML, Ettwig KF, Jetten MS, Strous M, Keltjens JT, van Niftrik L., Biochem. Soc. Trans. 39(1), 2011
PMID: 21265781

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