RNA-based regulation in the plant circadian clock

Staiger D, Green R (2011)
Trends in Plant Science 16(10): 517-523.

Journal Article | Published | English

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The circadian clock is an endogenous, approximately 24-h timer that enables plants to anticipate daily changes in their environment and regulates a considerable fraction of the transcriptome. At the core of the circadian system is the oscillator, made up of interconnected feedback loops, involving transcriptional regulation of clock genes and post-translational modification of clock proteins. Recently, it has become clear that post-transcriptional events are also critical for shaping rhythmic mRNA and protein profiles. This review covers regulation at the RNA level of both the core clock and output genes in Arabidopsis (Arabidopsis thaliana), with comparisons with other model organisms. We discuss the role of splicing, mRNA decay and translational regulation as well as recent insights into rhythms of noncoding regulatory RNAs.
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Staiger D, Green R. RNA-based regulation in the plant circadian clock. Trends in Plant Science. 2011;16(10):517-523.
Staiger, D., & Green, R. (2011). RNA-based regulation in the plant circadian clock. Trends in Plant Science, 16(10), 517-523.
Staiger, D., and Green, R. (2011). RNA-based regulation in the plant circadian clock. Trends in Plant Science 16, 517-523.
Staiger, D., & Green, R., 2011. RNA-based regulation in the plant circadian clock. Trends in Plant Science, 16(10), p 517-523.
D. Staiger and R. Green, “RNA-based regulation in the plant circadian clock”, Trends in Plant Science, vol. 16, 2011, pp. 517-523.
Staiger, D., Green, R.: RNA-based regulation in the plant circadian clock. Trends in Plant Science. 16, 517-523 (2011).
Staiger, Dorothee, and Green, Rachel. “RNA-based regulation in the plant circadian clock”. Trends in Plant Science 16.10 (2011): 517-523.
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Zhang L, Wan Y, Huang G, Wang D, Yu X, Huang G, Guo J., Sci Rep 5(), 2015
PMID: 26306464
Multiple pathways regulate shoot branching.
Rameau C, Bertheloot J, Leduc N, Andrieu B, Foucher F, Sakr S., Front Plant Sci 5(), 2014
PMID: 25628627
De novo transcriptome assembly and comparative analysis of differentially expressed genes in Prunus dulcis Mill. in response to freezing stress.
Mousavi S, Alisoltani A, Shiran B, Fallahi H, Ebrahimie E, Imani A, Houshmand S., PLoS ONE 9(8), 2014
PMID: 25122458
Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa.
Chou WL, Huang LF, Fang JC, Yeh CH, Hong CY, Wu SJ, Lu CA., Plant Mol. Biol. 85(4-5), 2014
PMID: 24805883
Regulation of the circadian clock through pre-mRNA splicing in Arabidopsis.
Cui Z, Xu Q, Wang X., J. Exp. Bot. 65(8), 2014
PMID: 24604736
Wheels within wheels: the plant circadian system.
Hsu PY, Harmer SL., Trends Plant Sci. 19(4), 2014
PMID: 24373845
Emerging roles for post-transcriptional regulation in circadian clocks.
Lim C, Allada R., Nat. Neurosci. 16(11), 2013
PMID: 24165681
Adaptation of molecular circadian clockwork to environmental changes: a role for alternative splicing and miRNAs.
Bartok O, Kyriacou CP, Levine J, Sehgal A, Kadener S., Proc. Biol. Sci. 280(1765), 2013
PMID: 23825200
Ribonucleoprotein complexes that control circadian clocks.
Wang D, Liang X, Chen X, Guo J., Int J Mol Sci 14(5), 2013
PMID: 23698761
Beyond Arabidopsis: the circadian clock in non-model plant species.
McClung CR., Semin. Cell Dev. Biol. 24(5), 2013
PMID: 23466287
Global approaches for telling time: omics and the Arabidopsis circadian clock.
Chow BY, Kay SA., Semin. Cell Dev. Biol. 24(5), 2013
PMID: 23435351
Nascent-Seq reveals novel features of mouse circadian transcriptional regulation.
Menet JS, Rodriguez J, Abruzzi KC, Rosbash M., Elife 1(), 2012
PMID: 23150795
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana.
Streitner C, Koster T, Simpson CG, Shaw P, Danisman S, Brown JW, Staiger D., Nucleic Acids Res. 40(22), 2012
PMID: 23042250
Alternative splicing in plants--coming of age.
Syed NH, Kalyna M, Marquez Y, Barta A, Brown JW., Trends Plant Sci. 17(10), 2012
PMID: 22743067
The regulation of plant growth by the circadian clock.
Farre EM., Plant Biol (Stuttg) 14(3), 2012
PMID: 22284304


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