Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42

Rückert C, Blom J, Chen XH, Reva O, Borriss R (2011)
Journal of Biotechnology 155(1): 78-85.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Autor
; ; ; ;
Abstract / Bemerkung
The complete genome sequence of Bacillus amyloliquefaciens type strain DSM7(T) is presented. A comparative analysis between the genome sequences of the plant associated strain FZB42 (Chen et al., 2007) with the genome of B. amyloliquefaciens DSM7(T) revealed obvious differences in the variable part of the genomes, whilst the core genomes were found to be very similar. The strains FZB42 and DSM7(T) have in common 3345 genes (CDS) in their core genomes; whilst 547 and 344 CDS were found to be unique in DSM7(T) and FZB42, respectively. The core genome shared by both strains exhibited 97.89% identity on amino acid level. The number of genes representing the core genome of the strains FZB42, DSM7(T), and Bacillus subtilis DSM10(T) was calculated as being 3098 and their identity was 92.25%. The 3,980,199 bp genome of DSM7(T) contains numerous genomic islands (GI) detected by different methods. Many of them were located in vicinity of tRNA, glnA, and glmS gene copies. In contrast to FZB42, but similar to B. subtilis DSM10(T), the GI were enriched in prophage sequences and often harbored transposases, integrases and recombinases. Compared to FZB42, B. amyloliquefaciens DSM7(T) possessed a reduced potential to non-ribosomally synthesize secondary metabolites with antibacterial and/or antifungal action. B. amyloliquefaciens DSM7(T) did not produce the polyketides difficidin and macrolactin and was impaired in its ability to produce lipopeptides other than surfactin. Differences established within the variable part of the genomes, justify our proposal to discriminate the plant-associated ecotype represented by FZB42 from the group of type strain related B. amyloliquefaciens soil bacteria. (C) 2011 Elsevier B. V. All rights reserved.
Erscheinungsjahr
Zeitschriftentitel
Journal of Biotechnology
Band
155
Zeitschriftennummer
1
Seite
78-85
ISSN
PUB-ID

Zitieren

Rückert C, Blom J, Chen XH, Reva O, Borriss R. Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42. Journal of Biotechnology. 2011;155(1):78-85.
Rückert, C., Blom, J., Chen, X. H., Reva, O., & Borriss, R. (2011). Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42. Journal of Biotechnology, 155(1), 78-85. doi:10.1016/j.jbiotec.2011.01.006
Rückert, C., Blom, J., Chen, X. H., Reva, O., and Borriss, R. (2011). Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42. Journal of Biotechnology 155, 78-85.
Rückert, C., et al., 2011. Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42. Journal of Biotechnology, 155(1), p 78-85.
C. Rückert, et al., “Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42”, Journal of Biotechnology, vol. 155, 2011, pp. 78-85.
Rückert, C., Blom, J., Chen, X.H., Reva, O., Borriss, R.: Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42. Journal of Biotechnology. 155, 78-85 (2011).
Rückert, Christian, Blom, Jochen, Chen, XiaoHua, Reva, Oleg, and Borriss, Rainer. “Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42”. Journal of Biotechnology 155.1 (2011): 78-85.

37 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Identification of up-regulated proteins potentially involved in the antagonism mechanism of Bacillus amyloliquefaciens G1.
Cao H, Zheng W, He S, Wang H, Wang T, Lu L., Antonie Van Leeuwenhoek 103(6), 2013
PMID: 23483288
Bacillus amyloliquefaciens ssp. plantarum strains as potential protective starter cultures for the production of Bikalga, an alkaline fermented food.
Compaoré CS, Nielsen DS, Sawadogo-Lingani H, Berner TS, Nielsen KF, Adimpong DB, Diawara B, Ouédraogo GA, Jakobsen M, Thorsen L., J Appl Microbiol 115(1), 2013
PMID: 23565829
Comparative Genomics of Bacillus species and its Relevance in Industrial Microbiology.
Sharma A, Satyanarayana T., Genomics Insights 6(), 2013
PMID: 26217108
Does the applicability of Bacillus strains in probiotics rely upon their taxonomy?
Safronova LA, Zelena LB, Klochko VV, Reva ON., Can J Microbiol 58(2), 2012
PMID: 22257263
Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites.
He P, Hao K, Blom J, Rückert C, Vater J, Mao Z, Wu Y, Hou M, He P, He Y, Borriss R., J Biotechnol 164(2), 2012
PMID: 23357245

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 21262282
PubMed | Europe PMC

Suchen in

Google Scholar