Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications

Schleif F-M, Riemer T, Boerner U, Schnapka-Hille L, Cross M (2011)
Bioinformatics 27(4): 524-533.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Autor
; ; ; ;
Erscheinungsjahr
Zeitschriftentitel
Bioinformatics
Band
27
Zeitschriftennummer
4
Seite
524-533
ISSN
eISSN
PUB-ID

Zitieren

Schleif F-M, Riemer T, Boerner U, Schnapka-Hille L, Cross M. Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications. Bioinformatics. 2011;27(4):524-533.
Schleif, F. - M., Riemer, T., Boerner, U., Schnapka-Hille, L., & Cross, M. (2011). Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications. Bioinformatics, 27(4), 524-533. doi:10.1093/bioinformatics/btq661
Schleif, F. - M., Riemer, T., Boerner, U., Schnapka-Hille, L., and Cross, M. (2011). Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications. Bioinformatics 27, 524-533.
Schleif, F.-M., et al., 2011. Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications. Bioinformatics, 27(4), p 524-533.
F.-M. Schleif, et al., “Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications”, Bioinformatics, vol. 27, 2011, pp. 524-533.
Schleif, F.-M., Riemer, T., Boerner, U., Schnapka-Hille, L., Cross, M.: Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications. Bioinformatics. 27, 524-533 (2011).
Schleif, Frank-Michael, Riemer, T., Boerner, U., Schnapka-Hille, L., and Cross, M. “Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications”. Bioinformatics 27.4 (2011): 524-533.

5 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Recommended strategies for spectral processing and post-processing of 1D 1H-NMR data of biofluids with a particular focus on urine.
Emwas AH, Saccenti E, Gao X, McKay RT, Dos Santos VAPM, Roy R, Wishart DS., Metabolomics 14(3), 2018
PMID: 29479299
Assessment of dietary exposure and effect in humans: The role of NMR.
van Duynhoven JPM, Jacobs DM., Prog Nucl Magn Reson Spectrosc 96(), 2016
PMID: 27573181
Novel selective TOCSY method enables NMR spectral elucidation of metabolomic mixtures.
MacKinnon N, While PT, Korvink JG., J Magn Reson 272(), 2016
PMID: 27701031
Automated quantum mechanical total line shape fitting model for quantitative NMR-based profiling of human serum metabolites.
Mihaleva VV, Korhonen SP, van Duynhoven J, Niemitz M, Vervoort J, Jacobs DM., Anal Bioanal Chem 406(13), 2014
PMID: 24722875
MetaboHunter: an automatic approach for identification of metabolites from 1H-NMR spectra of complex mixtures.
Tulpan D, Léger S, Belliveau L, Culf A, Cuperlović-Culf M., BMC Bioinformatics 12(), 2011
PMID: 21999117

23 References

Daten bereitgestellt von Europe PubMed Central.


AUTHOR UNKNOWN, proceedings of the international society for magnetic resonance in medicine 9(), 2001

AUTHOR UNKNOWN, journal of magnetic resonance (san diego calif 1997) 106a(), 1994

AUTHOR UNKNOWN, 2003

AUTHOR UNKNOWN, analchim acta 487(), 2003

AUTHOR UNKNOWN, th workshop on selforganizing maps 1(), 2005

AUTHOR UNKNOWN, briefings in bioinformatics 7(), 2006
Metabolomics in systems biology.
Weckwerth W., Annu Rev Plant Biol 54(), 2003
PMID: 14503007
A comparison of methods for alignment of NMR peaks in the context of cluster analysis.
Forshed J, Torgrip RJ, Aberg KM, Karlberg B, Lindberg J, Jacobsson SP., J Pharm Biomed Anal 38(5), 2005
PMID: 16087044
Metabolomics technologies and metabolite identification
Moco, TrAC Trends in Analytical Chemistry 26(9), 2007
The cellular geometry of growth drives the amino acid economy of Caenorhabditis elegans.
Swire J, Fuchs S, Bundy JG, Leroi AM., Proc. Biol. Sci. 276(1668), 2009
PMID: 19439436
icoshift: A versatile tool for the rapid alignment of 1D NMR spectra.
Savorani F, Tomasi G, Engelsen SB., J. Magn. Reson. 202(2), 2010
PMID: 20004603
Partial linear fit: A new NMR spectroscopy preprocessing tool for pattern recognition applications
Vogels, Journal of Chemometrics 10(5-6), 1996
Targeted profiling: quantitative analysis of 1H NMR metabolomics data.
Weljie AM, Newton J, Mercier P, Carlson E, Slupsky CM., Anal. Chem. 78(13), 2006
PMID: 16808451
HiRes--a tool for comprehensive assessment and interpretation of metabolomic data.
Zhao Q, Stoyanova R, Du S, Sajda P, Brown TR., Bioinformatics 22(20), 2006
PMID: 16895927
Robust baseline correction algorithm for signal dense NMR spectra.
Chang D, Banack CD, Shah SL., J. Magn. Reson. 187(2), 2007
PMID: 17562374
Baseline correction for NMR spectroscopic metabolomics data analysis.
Xi Y, Rocke DM., BMC Bioinformatics 9(), 2008
PMID: 18664284
SIRIUS: decomposing isotope patterns for metabolite identification.
Bocker S, Letzel MC, Liptak Z, Pervukhin A., Bioinformatics 25(2), 2009
PMID: 19015140
Bag of Peaks: interpretation of NMR spectrometry.
Brelstaff G, Bicego M, Culeddu N, Chessa M., Bioinformatics 25(2), 2009
PMID: 19017658
MetaboMiner--semi-automated identification of metabolites from 2D NMR spectra of complex biofluids.
Xia J, Bjorndahl TC, Tang P, Wishart DS., BMC Bioinformatics 9(), 2008
PMID: 19040747
Metabolomic profiling of drug responses in acute myeloid leukaemia cell lines.
Tiziani S, Lodi A, Khanim FL, Viant MR, Bunce CM, Gunther UL., PLoS ONE 4(1), 2009
PMID: 19158949
Metabolomic studies on geographical grapes and their wines using 1H NMR analysis coupled with multivariate statistics.
Son HS, Hwang GS, Kim KM, Ahn HJ, Park WM, Van Den Berg F, Hong YS, Lee CH., J. Agric. Food Chem. 57(4), 2009
PMID: 19192969

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 21123223
PubMed | Europe PMC

Suchen in

Google Scholar