Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean

Margaret I, Becker A, Blom J, Bonilla I, Goesmann A, Göttfert M, Lloret J, Mittard-Runte V, Rückert C, Ruiz-Sainz J-E, Vinardell JM, et al. (2011)
Journal of Biotechnology 155(1): 11-19.

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Abstract
Glycine max (soybean) plants can be nodulated by fast-growing rhizobial strains of the genus Sinorhizobium as well as by slow-growing strains clustered in the genus Bradyrhizobium. Fast-growing rhizobia strains with different soybean cultivar specificities have been isolated from Chinese soils and from other geographical regions. Most of these strains have been clustered into the species Sinorhizobium fredii. The S. fredii strain HH103 was isolated from soils of Hubei province, Central China and was first described in 1985. This strain is capable to nodulate American and Asiatic soybean cultivars and many other different legumes and is so far the best studied fast-growing soybean-nodulating strain. Additionally to the chromosome S. fredii HH103 carries five indigenous plasmids. The largest plasmid (pSfrHH103e) harbours genes for the production of diverse surface polysaccharides, such as exopolysaccharides (EPS), lipopolysaccharides (LPS), and capsular polysaccharides (KPS). The second largest plasmid (pSfrHH103d) is a typical symbiotic plasmid (pSym), carrying nodulation and nitrogen fixation genes. The present mini review focuses on symbiotic properties of S. fredii HH103, in particular on nodulation and surface polysaccharides aspects. The model strain S. fredii HH103 was chosen for genomic sequencing, which is currently in progress. First analyses of the draft genome sequence revealed an extensive synteny between the chromosomes of S. fredii HH103 and Rhizobium sp. NGR234.
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Margaret I, Becker A, Blom J, et al. Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology. 2011;155(1):11-19.
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., et al. (2011). Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology, 155(1), 11-19.
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., Mittard-Runte, V., Rückert, C., Ruiz-Sainz, J. - E., et al. (2011). Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology 155, 11-19.
Margaret, I., et al., 2011. Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology, 155(1), p 11-19.
I. Margaret, et al., “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”, Journal of Biotechnology, vol. 155, 2011, pp. 11-19.
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., Mittard-Runte, V., Rückert, C., Ruiz-Sainz, J.-E., Vinardell, J.M., Weidner, S.: Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology. 155, 11-19 (2011).
Margaret, Isabel, Becker, Anke, Blom, Jochen, Bonilla, Ildefonso, Goesmann, Alexander, Göttfert, Michael, Lloret, Javier, Mittard-Runte, Virginie, Rückert, Christian, Ruiz-Sainz, José-Enrique, Vinardell, José Maria, and Weidner, Stefan. “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”. Journal of Biotechnology 155.1 (2011): 11-19.
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9 Citations in Europe PMC

Data provided by Europe PubMed Central.

NopC Is a Rhizobium-Specific Type 3 Secretion System Effector Secreted by Sinorhizobium (Ensifer) fredii HH103.
Jimenez-Guerrero I, Perez-Montano F, Medina C, Ollero FJ, Lopez-Baena FJ., PLoS ONE 10(11), 2015
PMID: 26569401
The Sinorhizobium (Ensifer) fredii HH103 Type 3 Secretion System Suppresses Early Defense Responses to Effectively Nodulate Soybean.
Jimenez-Guerrero I, Perez-Montano F, Monreal JA, Preston GM, Fones H, Vioque B, Ollero FJ, Lopez-Baena FJ., Mol. Plant Microbe Interact. 28(7), 2015
PMID: 25775271
The Sinorhizobium fredii HH103 Genome: A Comparative Analysis With S. fredii Strains Differing in Their Symbiotic Behavior With Soybean.
Vinardell JM, Acosta-Jurado S, Zehner S, Gottfert M, Becker A, Baena I, Blom J, Crespo-Rivas JC, Goesmann A, Jaenicke S, Krol E, McIntosh M, Margaret I, Perez-Montano F, Schneiker-Bekel S, Serrania J, Szczepanowski R, Buendia AM, Lloret J, Bonilla I, Puhler A, Ruiz-Sainz JE, Weidner S., Mol. Plant Microbe Interact. 28(7), 2015
PMID: 25675256
Structure and biological roles of Sinorhizobium fredii HH103 exopolysaccharide.
Rodriguez-Navarro DN, Rodriguez-Carvajal MA, Acosta-Jurado S, Soto MJ, Margaret I, Crespo-Rivas JC, Sanjuan J, Temprano F, Gil-Serrano A, Ruiz-Sainz JE, Vinardell JM., PLoS ONE 9(12), 2014
PMID: 25521500
Phylogenetic diversity of Mesorhizobium in chickpea.
Kim DH, Kaashyap M, Rathore A, Das RR, Parupalli S, Upadhyaya HD, Gopalakrishnan S, Gaur PM, Singh S, Kaur J, Yasin M, Varshney RK., J. Biosci. 39(3), 2014
PMID: 24845514
A set of Lotus japonicus Gifu x Lotus burttii recombinant inbred lines facilitates map-based cloning and QTL mapping.
Sandal N, Jin H, Rodriguez-Navarro DN, Temprano F, Cvitanich C, Brachmann A, Sato S, Kawaguchi M, Tabata S, Parniske M, Ruiz-Sainz JE, Andersen SU, Stougaard J., DNA Res. 19(4), 2012
PMID: 22619310
Sinorhizobium fredii HH103 rkp-3 genes are required for K-antigen polysaccharide biosynthesis, affect lipopolysaccharide structure and are essential for infection of legumes forming determinate nodules.
Margaret I, Crespo-Rivas JC, Acosta-Jurado S, Buendia-Claveria AM, Cubo MT, Gil-Serrano A, Moreno J, Murdoch PS, Rodriguez-Carvajal MA, Rodriguez-Navarro DN, Ruiz-Sainz JE, Sanjuan J, Soto MJ, Vinardell JM., Mol. Plant Microbe Interact. 25(6), 2012
PMID: 22397406
Genome sequence of the soybean symbiont Sinorhizobium fredii HH103.
Weidner S, Becker A, Bonilla I, Jaenicke S, Lloret J, Margaret I, Puhler A, Ruiz-Sainz JE, Schneiker-Bekel S, Szczepanowski R, Vinardell JM, Zehner S, Gottfert M., J. Bacteriol. 194(6), 2012
PMID: 22374952

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