Partitioning Biological Data with Transitivity Clustering

Wittkop T, Emig D, Lange SJ, Rahmann S, Albrecht M, Morris JH, Böcker S, Stoye J, Baumbach J (2010)
Nature Methods 7(6): 419-420.

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Wittkop T, Emig D, Lange SJ, et al. Partitioning Biological Data with Transitivity Clustering. Nature Methods. 2010;7(6):419-420.
Wittkop, T., Emig, D., Lange, S. J., Rahmann, S., Albrecht, M., Morris, J. H., Böcker, S., et al. (2010). Partitioning Biological Data with Transitivity Clustering. Nature Methods, 7(6), 419-420.
Wittkop, T., Emig, D., Lange, S. J., Rahmann, S., Albrecht, M., Morris, J. H., Böcker, S., Stoye, J., and Baumbach, J. (2010). Partitioning Biological Data with Transitivity Clustering. Nature Methods 7, 419-420.
Wittkop, T., et al., 2010. Partitioning Biological Data with Transitivity Clustering. Nature Methods, 7(6), p 419-420.
T. Wittkop, et al., “Partitioning Biological Data with Transitivity Clustering”, Nature Methods, vol. 7, 2010, pp. 419-420.
Wittkop, T., Emig, D., Lange, S.J., Rahmann, S., Albrecht, M., Morris, J.H., Böcker, S., Stoye, J., Baumbach, J.: Partitioning Biological Data with Transitivity Clustering. Nature Methods. 7, 419-420 (2010).
Wittkop, Tobias, Emig, Dorothea, Lange, Sita J., Rahmann, Sven, Albrecht, Mario, Morris, John H., Böcker, Sebastian, Stoye, Jens, and Baumbach, Jan. “Partitioning Biological Data with Transitivity Clustering”. Nature Methods 7.6 (2010): 419-420.
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22 Citations in Europe PMC

Data provided by Europe PubMed Central.

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Oh J, Choi CH, Park MK, Kim BK, Hwang K, Lee SH, Hong SG, Nasir A, Cho WS, Kim KM., PLoS ONE 11(3), 2016
PMID: 26954507
Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels.
Sayavedra L, Kleiner M, Ponnudurai R, Wetzel S, Pelletier E, Barbe V, Satoh N, Shoguchi E, Fink D, Breusing C, Reusch TB, Rosenstiel P, Schilhabel MB, Becher D, Schweder T, Markert S, Dubilier N, Petersen JM., Elife 4(), 2015
PMID: 26371554
CMRegNet-An interspecies reference database for corynebacterial and mycobacterial regulatory networks.
Abreu VA, Almeida S, Tiwari S, Hassan SS, Mariano D, Silva A, Baumbach J, Azevedo V, Rottger R., BMC Genomics 16(), 2015
PMID: 26062809
Carotta: Revealing Hidden Confounder Markers in Metabolic Breath Profiles.
Hauschild AC, Frisch T, Baumbach JI, Baumbach J., Metabolites 5(2), 2015
PMID: 26065494
Evaluation and improvements of clustering algorithms for detecting remote homologous protein families.
Bernardes JS, Vieira FR, Costa LM, Zaverucha G., BMC Bioinformatics 16(), 2015
PMID: 25651949
Massive fungal biodiversity data re-annotation with multi-level clustering.
Vu D, Szoke S, Wiwie C, Baumbach J, Cardinali G, Rottger R, Robert V., Sci Rep 4(), 2014
PMID: 25355642
On the limits of computational functional genomics for bacterial lifestyle prediction.
Barbosa E, Rottger R, Hauschild AC, Azevedo V, Baumbach J., Brief Funct Genomics 13(5), 2014
PMID: 24855068
Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering.
Sun P, Speicher NK, Rottger R, Guo J, Baumbach J., Nucleic Acids Res. 42(9), 2014
PMID: 24682815
CLUSTOM: a novel method for clustering 16S rRNA next generation sequences by overlap minimization.
Hwang K, Oh J, Kim TK, Kim BK, Yu DS, Hou BK, Caetano-Anolles G, Hong SG, Kim KM., PLoS ONE 8(5), 2013
PMID: 23650520
Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes.
Buttigieg PL, Hankeln W, Kostadinov I, Kottmann R, Yilmaz P, Duhaime MB, Glockner FO., PLoS ONE 8(3), 2013
PMID: 23516388
DEFOG: discrete enrichment of functionally organized genes.
Wittkop T, Berman AE, Fleisch KM, Mooney SD., Integr Biol (Camb) 4(7), 2012
PMID: 22706384
High-quality sequence clustering guided by network topology and multiple alignment likelihood.
Miele V, Penel S, Daubin V, Picard F, Kahn D, Duret L., Bioinformatics 28(8), 2012
PMID: 22368255
clusterMaker: a multi-algorithm clustering plugin for Cytoscape.
Morris JH, Apeltsin L, Newman AM, Baumbach J, Wittkop T, Su G, Bader GD, Ferrin TE., BMC Bioinformatics 12(), 2011
PMID: 22070249
Comprehensive cluster analysis with Transitivity Clustering.
Wittkop T, Emig D, Truss A, Albrecht M, Bocker S, Baumbach J., Nat Protoc 6(3), 2011
PMID: 21372810
A combined approach for comparative exoproteome analysis of Corynebacterium pseudotuberculosis.
Pacheco LG, Slade SE, Seyffert N, Santos AR, Castro TL, Silva WM, Santos AV, Santos SG, Farias LM, Carvalho MA, Pimenta AM, Meyer R, Silva A, Scrivens JH, Oliveira SC, Miyoshi A, Dowson CG, Azevedo V., BMC Microbiol. 11(1), 2011
PMID: 21241507

3 References

Data provided by Europe PubMed Central.

An efficient algorithm for large-scale detection of protein families.
Enright AJ, Van Dongen S, Ouzounis CA., Nucleic Acids Res. 30(7), 2002
PMID: 11917018
Integration of biological networks and gene expression data using Cytoscape.
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD., Nat Protoc 2(10), 2007
PMID: 17947979
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing.
Wittkop T, Baumbach J, Lobo FP, Rahmann S., BMC Bioinformatics 8(), 2007
PMID: 17941985

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