Surfing on a new wave of single-molecule fluorescence methods

Hohlbein J, Gryte K, Heilemann M, Kapanidis AN (2010)
PHYSICAL BIOLOGY 7(3).

Journal Article | Published | English

No fulltext has been uploaded

Author
; ; ;
Abstract
Single-molecule fluorescence microscopy is currently one of the most popular methods in the single-molecule toolbox. In this review, we discuss recent advances in fluorescence instrumentation and assays: these methods are characterized by a substantial increase in complexity of the instrumentation or biological samples involved. Specifically, we describe new multi-laser and multi-colour fluorescence spectroscopy and imaging techniques, super-resolution microscopy imaging and the development of instruments that combine fluorescence detection with other single-molecule methods such as force spectroscopy. We also highlight two pivotal developments in basic and applied biosciences: the new information available from detection of single molecules in single biological cells and exciting developments in fluorescence-based single-molecule DNA sequencing.
Publishing Year
ISSN
eISSN
PUB-ID

Cite this

Hohlbein J, Gryte K, Heilemann M, Kapanidis AN. Surfing on a new wave of single-molecule fluorescence methods. PHYSICAL BIOLOGY. 2010;7(3).
Hohlbein, J., Gryte, K., Heilemann, M., & Kapanidis, A. N. (2010). Surfing on a new wave of single-molecule fluorescence methods. PHYSICAL BIOLOGY, 7(3).
Hohlbein, J., Gryte, K., Heilemann, M., and Kapanidis, A. N. (2010). Surfing on a new wave of single-molecule fluorescence methods. PHYSICAL BIOLOGY 7.
Hohlbein, J., et al., 2010. Surfing on a new wave of single-molecule fluorescence methods. PHYSICAL BIOLOGY, 7(3).
J. Hohlbein, et al., “Surfing on a new wave of single-molecule fluorescence methods”, PHYSICAL BIOLOGY, vol. 7, 2010.
Hohlbein, J., Gryte, K., Heilemann, M., Kapanidis, A.N.: Surfing on a new wave of single-molecule fluorescence methods. PHYSICAL BIOLOGY. 7, (2010).
Hohlbein, Johannes, Gryte, Kristofer, Heilemann, Mike, and Kapanidis, Achillefs N. “Surfing on a new wave of single-molecule fluorescence methods”. PHYSICAL BIOLOGY 7.3 (2010).
This data publication is cited in the following publications:
This publication cites the following data publications:

18 Citations in Europe PMC

Data provided by Europe PubMed Central.

Camera-based single-molecule FRET detection with improved time resolution.
Farooq S, Hohlbein J., Phys Chem Chem Phys 17(41), 2015
PMID: 26439729
Internalization and observation of fluorescent biomolecules in living microorganisms via electroporation.
Aigrain L, Sustarsic M, Crawford R, Plochowietz A, Kapanidis AN., J Vis Exp (96), 2015
PMID: 25741968
Studying DNA-protein interactions with single-molecule Forster resonance energy transfer.
Farooq S, Fijen C, Hohlbein J., Protoplasma 251(2), 2014
PMID: 24374460
Increasing the brightness of cyanine fluorophores for single-molecule and superresolution imaging.
Klehs K, Spahn C, Endesfelder U, Lee SF, Furstenberg A, Heilemann M., Chemphyschem 15(4), 2014
PMID: 24376142
Alternating-laser excitation: single-molecule FRET and beyond.
Hohlbein J, Craggs TD, Cordes T., Chem Soc Rev 43(4), 2014
PMID: 24037326
Long-lived intracellular single-molecule fluorescence using electroporated molecules.
Crawford R, Torella JP, Aigrain L, Plochowietz A, Gryte K, Uphoff S, Kapanidis AN., Biophys. J. 105(11), 2013
PMID: 24314075
DNA conformations in mismatch repair probed in solution by X-ray scattering from gold nanocrystals.
Hura GL, Tsai CL, Claridge SA, Mendillo ML, Smith JM, Williams GJ, Mastroianni AJ, Alivisatos AP, Putnam CD, Kolodner RD, Tainer JA., Proc. Natl. Acad. Sci. U.S.A. 110(43), 2013
PMID: 24101514
Single-molecule photobleaching reveals increased MET receptor dimerization upon ligand binding in intact cells.
Dietz MS, Haße D, Ferraris DM, Gohler A, Niemann HH, Heilemann M., BMC Biophys 6(1), 2013
PMID: 23731667
Advances in quantitative FRET-based methods for studying nucleic acids.
Preus S, Wilhelmsson LM., Chembiochem 13(14), 2012
PMID: 22936620
Characterization of dark quencher chromophores as nonfluorescent acceptors for single-molecule FRET.
Le Reste L, Hohlbein J, Gryte K, Kapanidis AN., Biophys. J. 102(11), 2012
PMID: 22713582
Super-resolution fluorescence imaging of chromosomal DNA.
Zessin PJ, Finan K, Heilemann M., J. Struct. Biol. 177(2), 2012
PMID: 22226957
Improved temporal resolution and linked hidden Markov modeling for switchable single-molecule FRET.
Uphoff S, Gryte K, Evans G, Kapanidis AN., Chemphyschem 12(3), 2011
PMID: 21280168

225 References

Data provided by Europe PubMed Central.

Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy.
Vogelsang J, Cordes T, Forthmann C, Steinhauer C, Tinnefeld P., Proc. Natl. Acad. Sci. U.S.A. 106(20), 2009
PMID: 19433792
Velocity, processivity, and individual steps of single myosin V molecules in live cells.
Pierobon P, Achouri S, Courty S, Dunn AR, Spudich JA, Dahan M, Cappello G., Biophys. J. 96(10), 2009
PMID: 19450497
Super-resolution fluorescence microscopy.
Huang B, Bates M, Zhuang X., Annu. Rev. Biochem. 78(), 2009
PMID: 19489737
An in vivo covalent TMP-tag based on proximity-induced reactivity.
Gallagher SS, Sable JE, Sheetz MP, Cornish VW., ACS Chem. Biol. 4(7), 2009
PMID: 19492849
Correlated movement and bending of nucleic acid structures visualized by multicolor single-molecule spectroscopy.
Person B, Stein IH, Steinhauer C, Vogelsang J, Tinnefeld P., Chemphyschem 10(9-10), 2009
PMID: 19499555
Structured illumination microscopy of a living cell.
Hirvonen LM, Wicker K, Mandula O, Heintzmann R., Eur. Biophys. J. 38(6), 2009
PMID: 19536533
PALM and STORM: what hides beyond the Rayleigh limit?
Henriques R, Mhlanga MM., Biotechnol J 4(6), 2009
PMID: 19548237
Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy.
Greenfield D, McEvoy AL, Shroff H, Crooks GE, Wingreen NS, Betzig E, Liphardt J., PLoS Biol. 7(6), 2009
PMID: 19547746
Quantification of the yeast transcriptome by single-molecule sequencing.
Lipson D, Raz T, Kieu A, Jones DR, Giladi E, Thayer E, Thompson JF, Letovsky S, Milos P, Causey M., Nat. Biotechnol. 27(7), 2009
PMID: 19581875
36 degrees step size of proton-driven c-ring rotation in FoF1-ATP synthase.
Duser MG, Zarrabi N, Cipriano DJ, Ernst S, Glick GD, Dunn SD, Borsch M., EMBO J. 28(18), 2009
PMID: 19644443
Super-Resolution Imaging with Small Organic Fluorophores
Heilemann, Angewandte Chemie International Edition 48(37), 2009
SSB protein diffusion on single-stranded DNA stimulates RecA filament formation.
Roy R, Kozlov AG, Lohman TM, Ha T., Nature 461(7267), 2009
PMID: 19820696

Hinterdorfer, 2009
Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging.
van Mameren J, Gross P, Farge G, Hooijman P, Modesti M, Falkenberg M, Wuite GJ, Peterman EJ., Proc. Natl. Acad. Sci. U.S.A. 106(43), 2009
PMID: 19841258
Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays.
Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen GB, Yeung G, Dahl F, Fernandez A, Staker B, Pant KP, Baccash J, Borcherding AP, Brownley A, Cedeno R, Chen L, Chernikoff D, Cheung A, Chirita R, Curson B, Ebert JC, Hacker CR, Hartlage R, Hauser B, Huang S, Jiang Y, Karpinchyk V, Koenig M, Kong C, Landers T, Le C, Liu J, McBride CE, Morenzoni M, Morey RE, Mutch K, Perazich H, Perry K, Peters BA, Peterson J, Pethiyagoda CL, Pothuraju K, Richter C, Rosenbaum AM, Roy S, Shafto J, Sharanhovich U, Shannon KW, Sheppy CG, Sun M, Thakuria JV, Tran A, Vu D, Zaranek AW, Wu X, Drmanac S, Oliphant AR, Banyai WC, Martin B, Ballinger DG, Church GM, Reid CA., Science 327(5961), 2010
PMID: 19892942
Progress in single-molecule spectroscopy in cells.
Yang H., Curr Opin Chem Biol 14(1), 2010
PMID: 19896891
Single-molecule measurements of synthesis by DNA polymerase with base-pair resolution.
Christian TD, Romano LJ, Rueda D., Proc. Natl. Acad. Sci. U.S.A. 106(50), 2009
PMID: 19955412

Bruchle, 2009
Resolving single-molecule assembled patterns with superresolution blink-microscopy.
Cordes T, Strackharn M, Stahl SW, Summerer W, Steinhauer C, Forthmann C, Puchner EM, Vogelsang J, Gaub HE, Tinnefeld P., Nano Lett. 10(2), 2010
PMID: 20017533
Conformational transitions in DNA polymerase I revealed by single-molecule FRET.
Santoso Y, Joyce CM, Potapova O, Le Reste L, Hohlbein J, Torella JP, Grindley ND, Kapanidis AN., Proc. Natl. Acad. Sci. U.S.A. 107(2), 2010
PMID: 20080740
Tracking a molecular motor with a nanoscale optical encoder.
Wickersham CE, Cash KJ, Pfeil SH, Bruck I, Kaplan DL, Plaxco KW, Lipman EA., Nano Lett. 10(3), 2010
PMID: 20121107
Multiple native states reveal persistent ruggedness of an RNA folding landscape.
Solomatin SV, Greenfeld M, Chu S, Herschlag D., Nature 463(7281), 2010
PMID: 20130651

Export

0 Marked Publications

Open Data PUB

Web of Science

View record in Web of Science®

Sources

PMID: 20686191
PubMed | Europe PMC

Search this title in

Google Scholar