GenDB - an open source genome annotation system for prokaryote genomes

Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)
Nucleic Acids Research 31(8): 2187-2195.

Download
OA
Journal Article | Published | English
Author
; ; ; ; ; ; ; ; ; ;
Publishing Year
ISSN
eISSN
PUB-ID

Cite this

Meyer F, Goesmann A, McHardy AC, et al. GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research. 2003;31(8):2187-2195.
Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research, 31(8), 2187-2195.
Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research 31, 2187-2195.
Meyer, F., et al., 2003. GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research, 31(8), p 2187-2195.
F. Meyer, et al., “GenDB - an open source genome annotation system for prokaryote genomes”, Nucleic Acids Research, vol. 31, 2003, pp. 2187-2195.
Meyer, F., Goesmann, A., McHardy, A.C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., Pühler, A.: GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research. 31, 2187-2195 (2003).
Meyer, Folker, Goesmann, Alexander, McHardy, Alice C., Bartels, Daniela, Bekel, Thomas, Clausen, Jörn, Kalinowski, Jörn, Linke, Burkhard, Rupp, Oliver, Giegerich, Robert, and Pühler, Alfred. “GenDB - an open source genome annotation system for prokaryote genomes”. Nucleic Acids Research 31.8 (2003): 2187-2195.
Main File(s)
File Name
Access Level
OA Open Access
Last Uploaded
2016-09-23T11:08:35Z

This data publication is cited in the following publications:
This publication cites the following data publications:

362 Citations in Europe PMC

Data provided by Europe PubMed Central.

Complete Genome Sequence of the Cyanogenic Phosphate-Solubilizing Pseudomonas sp. Strain CCOS 191, a Close Relative of Pseudomonas mosselii.
Smits TH, Pothier JF, Ruinelli M, Blom J, Frasson D, Koechli C, Fabbri C, Brandl H, Duffy B, Sievers M., Genome Announc 3(3), 2015
PMID: 26067963
Endophytic Streptomyces in the traditional medicinal plant Arnica montana L.: secondary metabolites and biological activity.
Wardecki T, Brotz E, De Ford C, von Loewenich FD, Rebets Y, Tokovenko B, Luzhetskyy A, Merfort I., Antonie Van Leeuwenhoek 108(2), 2015
PMID: 26036671
Complete genome sequence of Paenibacillus riograndensis SBR5(T), a Gram-positive diazotrophic rhizobacterium.
Brito LF, Bach E, Kalinowski J, Ruckert C, Wibberg D, Passaglia LM, Wendisch VF., J. Biotechnol. 207(), 2015
PMID: 25959170
Complete Sequence of Probiotic Symbioflor 2 Escherichia coli Strain G3/10 and Draft Sequences of Symbioflor 2 E. coli Strains G1/2, G4/9, G5, G6/7, and G8.
Zschuttig A, Auerbach C, Meltke S, Eichhorn C, Brandt M, Blom J, Goesmann A, Jarek M, Scharfe M, Zimmermann K, Wassenaar TM, Gunzer F., Genome Announc 3(2), 2015
PMID: 25745009
Genomic avenue to avian colisepticemia.
Huja S, Oren Y, Trost E, Brzuszkiewicz E, Biran D, Blom J, Goesmann A, Gottschalk G, Hacker J, Ron EZ, Dobrindt U., MBio 6(1), 2015
PMID: 25587010
The mannitol utilization system of the marine bacterium Zobellia galactanivorans.
Groisillier A, Labourel A, Michel G, Tonon T., Appl. Environ. Microbiol. 81(5), 2015
PMID: 25548051
Complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid.
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Puhler A, Kalinowski J, Ruckert C., J. Biotechnol. 194(), 2015
PMID: 25499805
Mycolic Acid Biosynthesis Genes in the Genome Sequence of Corynebacterium atypicum DSM 44849.
Tippelt A, Mollmann S, Albersmeier A, Jaenicke S, Ruckert C, Tauch A., Genome Announc 2(4), 2014
PMID: 25146145
Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria.
Klippel B, Sahm K, Basner A, Wiebusch S, John P, Lorenz U, Peters A, Abe F, Takahashi K, Kaiser O, Goesmann A, Jaenicke S, Grote R, Horikoshi K, Antranikian G., Extremophiles 18(5), 2014
PMID: 25108363
Genome sequence of Clostridium tunisiense TJ, isolated from drain sediment from a pesticide factory.
Sun L, Wang Y, Yu C, Zhao Y, Gan Y., J. Bacteriol. 194(24), 2012
PMID: 23209212

20 References

Data provided by Europe PubMed Central.

MAGPIE: automated genome interpretation.
Gaasterland T, Sensen CW., Trends Genet. 12(2), 1996
PMID: 8851977
Automated genome sequence analysis and annotation.
Andrade MA, Brown NP, Leroy C, Hoersch S, de Daruvar A, Reich C, Franchini A, Tamames J, Valencia A, Ouzounis C, Sander C., Bioinformatics 15(5), 1999
PMID: 10366660
Functional and structural genomics using PEDANT.
Frishman D, Albermann K, Hani J, Heumann K, Metanomski A, Zollner A, Mewes HW., Bioinformatics 17(1), 2001
PMID: 11222261

AUTHOR UNKNOWN, 0
Artemis: sequence visualization and annotation.
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B., Bioinformatics 16(10), 2000
PMID: 11120685
The use of gene clusters to infer functional coupling.
Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N., Proc. Natl. Acad. Sci. U.S.A. 96(6), 1999
PMID: 10077608
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM., Nucleic Acids Res. 29(1), 2001
PMID: 11125043
SRS--an indexing and retrieval tool for flat file data libraries.
Etzold T, Argos P., Comput. Appl. Biosci. 9(1), 1993
PMID: 8435768
PathFinder: reconstruction and dynamic visualization of metabolic pathways.
Goesmann A, Haubrock M, Meyer F, Kalinowski J, Giegerich R., Bioinformatics 18(1), 2002
PMID: 11836220
Improved microbial gene identification with GLIMMER.
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL., Nucleic Acids Res. 27(23), 1999
PMID: 10556321
CRITICA: coding region identification tool invoking comparative analysis.
Badger JH, Olsen GJ, Woese CR., Mol. Biol. Evol. 16(4), 1999
PMID: 10331277
Profile hidden Markov models.
Eddy SR., Bioinformatics 14(9), 1998
PMID: 9918945
Automated assembly of protein blocks for database searching.
Henikoff S, Henikoff JG., Nucleic Acids Res. 19(23), 1991
PMID: 1754394

AUTHOR UNKNOWN, 0
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G., Protein Eng. 10(1), 1997
PMID: 9051728

AUTHOR UNKNOWN, 0
The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere.
Tauch A, Schneiker S, Selbitschka W, Puhler A, van Overbeek LS, Smalla K, Thomas CM, Bailey MJ, Forney LJ, Weightman A, Ceglowski P, Pembroke T, Tietze E, Schroder G, Lanka E, van Elsas JD., Microbiology (Reading, Engl.) 148(Pt 6), 2002
PMID: 12055285

AUTHOR UNKNOWN, 0

Export

0 Marked Publications

Open Data PUB

Web of Science

View record in Web of Science®

Sources

PMID: 12682369
PubMed | Europe PMC

Search this title in

Google Scholar