GenDB - an open source genome annotation system for prokaryote genomes

Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)
Nucleic Acids Research 31(8): 2187-2195.

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Meyer F, Goesmann A, McHardy AC, et al. GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research. 2003;31(8):2187-2195.
Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research, 31(8), 2187-2195. doi:10.1093/nar/gkg312
Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research 31, 2187-2195.
Meyer, F., et al., 2003. GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research, 31(8), p 2187-2195.
F. Meyer, et al., “GenDB - an open source genome annotation system for prokaryote genomes”, Nucleic Acids Research, vol. 31, 2003, pp. 2187-2195.
Meyer, F., Goesmann, A., McHardy, A.C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., Pühler, A.: GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research. 31, 2187-2195 (2003).
Meyer, Folker, Goesmann, Alexander, McHardy, Alice C., Bartels, Daniela, Bekel, Thomas, Clausen, Jörn, Kalinowski, Jörn, Linke, Burkhard, Rupp, Oliver, Giegerich, Robert, and Pühler, Alfred. “GenDB - an open source genome annotation system for prokaryote genomes”. Nucleic Acids Research 31.8 (2003): 2187-2195.
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401 Citations in Europe PMC

Data provided by Europe PubMed Central.

A comprehensive software suite for the analysis of cDNAs.
Arakawa K, Suzuki H, Fujishima K, Fujimoto K, Ueda S, Matsui M, Tomita M., Genomics Proteomics Bioinformatics 3(3), 2005
PMID: 16487083

20 References

Data provided by Europe PubMed Central.

MAGPIE: automated genome interpretation.
Gaasterland T, Sensen CW., Trends Genet. 12(2), 1996
PMID: 8851977
Automated genome sequence analysis and annotation.
Andrade MA, Brown NP, Leroy C, Hoersch S, de Daruvar A, Reich C, Franchini A, Tamames J, Valencia A, Ouzounis C, Sander C., Bioinformatics 15(5), 1999
PMID: 10366660
Functional and structural genomics using PEDANT.
Frishman D, Albermann K, Hani J, Heumann K, Metanomski A, Zollner A, Mewes HW., Bioinformatics 17(1), 2001
PMID: 11222261

AUTHOR UNKNOWN, 0
Artemis: sequence visualization and annotation.
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B., Bioinformatics 16(10), 2000
PMID: 11120685
The use of gene clusters to infer functional coupling.
Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N., Proc. Natl. Acad. Sci. U.S.A. 96(6), 1999
PMID: 10077608
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM., Nucleic Acids Res. 29(1), 2001
PMID: 11125043
SRS--an indexing and retrieval tool for flat file data libraries.
Etzold T, Argos P., Comput. Appl. Biosci. 9(1), 1993
PMID: 8435768
PathFinder: reconstruction and dynamic visualization of metabolic pathways.
Goesmann A, Haubrock M, Meyer F, Kalinowski J, Giegerich R., Bioinformatics 18(1), 2002
PMID: 11836220
Improved microbial gene identification with GLIMMER.
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL., Nucleic Acids Res. 27(23), 1999
PMID: 10556321
CRITICA: coding region identification tool invoking comparative analysis.
Badger JH, Olsen GJ, Woese CR., Mol. Biol. Evol. 16(4), 1999
PMID: 10331277
Profile hidden Markov models.
Eddy SR., Bioinformatics 14(9), 1998
PMID: 9918945
Automated assembly of protein blocks for database searching.
Henikoff S, Henikoff JG., Nucleic Acids Res. 19(23), 1991
PMID: 1754394

AUTHOR UNKNOWN, 0
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G., Protein Eng. 10(1), 1997
PMID: 9051728

AUTHOR UNKNOWN, 0
The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere.
Tauch A, Schneiker S, Selbitschka W, Puhler A, van Overbeek LS, Smalla K, Thomas CM, Bailey MJ, Forney LJ, Weightman A, Ceglowski P, Pembroke T, Tietze E, Schroder G, Lanka E, van Elsas JD., Microbiology (Reading, Engl.) 148(Pt 6), 2002
PMID: 12055285

AUTHOR UNKNOWN, 0

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