RNAhybrid: microRNA target prediction easy, fast and flexible

Krüger J, Rehmsmeier M (2006)
Nucleic Acids Research 34(Web Server): W451-W454.

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Abstract
In the elucidation of the microRNA regulatory network, knowledge of potential targets is of highest importance. Among existing target prediction methods, RNAhybrid [ M. Rehmsmeier, P. Steffen, M. Hochsmann and R. Giegerich ( 2004) RNA, 10, 1507 - 1517] is unique in offering a flexible online prediction. Recently, some useful features have been added, among these the possibility to disallow G: U base pairs in the seed region, and a seed- match speed- up, which accelerates the program by a factor of 8. In addition, the program can now be used as a webservice for remote calls from user-implemented programs. We demonstrate RNAhybrid's flexibility with the prediction of a non- canonical target site for Caenorhabditis elegans miR- 241 in the 30- untranslated region of lin-39. RNAhybrid is available at http://bibiserv.techfak.uni-bielefeld.de/rnahybrid.
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Krüger J, Rehmsmeier M. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research. 2006;34(Web Server):W451-W454.
Krüger, J., & Rehmsmeier, M. (2006). RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research, 34(Web Server), W451-W454. doi:10.1093/nar/gkl243
Krüger, J., and Rehmsmeier, M. (2006). RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research 34, W451-W454.
Krüger, J., & Rehmsmeier, M., 2006. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research, 34(Web Server), p W451-W454.
J. Krüger and M. Rehmsmeier, “RNAhybrid: microRNA target prediction easy, fast and flexible”, Nucleic Acids Research, vol. 34, 2006, pp. W451-W454.
Krüger, J., Rehmsmeier, M.: RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research. 34, W451-W454 (2006).
Krüger, Jan, and Rehmsmeier, Marc. “RNAhybrid: microRNA target prediction easy, fast and flexible”. Nucleic Acids Research 34.Web Server (2006): W451-W454.
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