RNA-related tools on the Bielefeld Bioinformatics Server
Sczyrba A, Krüger J, Mersch H, Kurtz S, Giegerich R (2003)
Nucleic Acids Research 31(13): 3767-3770.
Journal Article
| Original Article
| Published
| English
Author
Sczyrba, AlexanderUniBi
;
Krüger, JanUniBi
;
Mersch, Henning
;
Kurtz, Stefan
;
Giegerich, RobertUniBi
Department
Abstract
We present four tools for the analysis of RNA secondary structure. They provide animated visualization of multiple structures, prediction of potential conformational switching, structure comparison (including local structure alignment) and prediction of structures potentially containing a certain kind of pseudoknots. All are available via the Bielefeld University Bioinformatics Server (http://bibiserv.techfak.uni-bielefeld.de).
Publishing Year
ISSN
eISSN
PUB-ID
Cite this
Sczyrba A, Krüger J, Mersch H, Kurtz S, Giegerich R. RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research. 2003;31(13):3767-3770.
Sczyrba, A., Krüger, J., Mersch, H., Kurtz, S., & Giegerich, R. (2003). RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research, 31(13), 3767-3770. doi:10.1093/nar/gkg576
Sczyrba, A., Krüger, J., Mersch, H., Kurtz, S., and Giegerich, R. (2003). RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research 31, 3767-3770.
Sczyrba, A., et al., 2003. RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research, 31(13), p 3767-3770.
A. Sczyrba, et al., “RNA-related tools on the Bielefeld Bioinformatics Server”, Nucleic Acids Research, vol. 31, 2003, pp. 3767-3770.
Sczyrba, A., Krüger, J., Mersch, H., Kurtz, S., Giegerich, R.: RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research. 31, 3767-3770 (2003).
Sczyrba, Alexander, Krüger, Jan, Mersch, Henning, Kurtz, Stefan, and Giegerich, Robert. “RNA-related tools on the Bielefeld Bioinformatics Server”. Nucleic Acids Research 31.13 (2003): 3767-3770.
All files available under the following license(s):
Copyright Statement:
This Item is protected by copyright and/or related rights. [...]
Main File(s)
File Name
Access Level
Open Access
File Name
Access Level
Open Access
This data publication is cited in the following publications:
This publication cites the following data publications:
10 Citations in Europe PMC
Data provided by Europe PubMed Central.
Mechanistic Roles of Noncoding RNAs in Lung Cancer Biology and Their Clinical Implications.
Enfield KS, Pikor LA, Martinez VD, Lam WL., Genet Res Int 2012(), 2012
PMID: 22852089
Enfield KS, Pikor LA, Martinez VD, Lam WL., Genet Res Int 2012(), 2012
PMID: 22852089
vHoT: a database for predicting interspecies interactions between viral microRNA and host genomes.
Kim H, Park S, Min H, Yoon S., Arch. Virol. 157(3), 2012
PMID: 22160653
Kim H, Park S, Min H, Yoon S., Arch. Virol. 157(3), 2012
PMID: 22160653
ViennaRNA Package 2.0.
Lorenz R, Bernhart SH, Honer Zu Siederdissen C, Tafer H, Flamm C, Stadler PF, Hofacker IL., Algorithms Mol Biol 6(), 2011
PMID: 22115189
Lorenz R, Bernhart SH, Honer Zu Siederdissen C, Tafer H, Flamm C, Stadler PF, Hofacker IL., Algorithms Mol Biol 6(), 2011
PMID: 22115189
Computational methods in noncoding RNA research.
Machado-Lima A, del Portillo HA, Durham AM., J Math Biol 56(1-2), 2008
PMID: 17786447
Machado-Lima A, del Portillo HA, Durham AM., J Math Biol 56(1-2), 2008
PMID: 17786447
Post-transcriptional nucleotide modification and alternative folding of RNA.
Helm M., Nucleic Acids Res. 34(2), 2006
PMID: 16452298
Helm M., Nucleic Acids Res. 34(2), 2006
PMID: 16452298
A benchmark of multiple sequence alignment programs upon structural RNAs.
Gardner PP, Wilm A, Washietl S., Nucleic Acids Res. 33(8), 2005
PMID: 15860779
Gardner PP, Wilm A, Washietl S., Nucleic Acids Res. 33(8), 2005
PMID: 15860779
A score matrix to reveal the hidden links in glycans.
Aoki KF, Mamitsuka H, Akutsu T, Kanehisa M., Bioinformatics 21(8), 2005
PMID: 15585530
Aoki KF, Mamitsuka H, Akutsu T, Kanehisa M., Bioinformatics 21(8), 2005
PMID: 15585530
A comprehensive comparison of comparative RNA structure prediction approaches.
Gardner PP, Giegerich R., BMC Bioinformatics 5(), 2004
PMID: 15458580
Gardner PP, Giegerich R., BMC Bioinformatics 5(), 2004
PMID: 15458580
RDfolder: a web server for prediction of RNA secondary structure.
Ying X, Luo H, Luo J, Li W., Nucleic Acids Res. 32(Web Server issue), 2004
PMID: 15215369
Ying X, Luo H, Luo J, Li W., Nucleic Acids Res. 32(Web Server issue), 2004
PMID: 15215369
6 References
Data provided by Europe PubMed Central.
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
RNA movies: visualizing RNA secondary structure spaces.
Evers D, Giegerich R., Bioinformatics 15(1), 1999
PMID: 10068690
Evers D, Giegerich R., Bioinformatics 15(1), 1999
PMID: 10068690
AUTHOR UNKNOWN, 0
Molecular dissection of the pseudoknot governing the translational regulation of Escherichia coli ribosomal protein S15.
Philippe C, Benard L, Portier C, Westhof E, Ehresmann B, Ehresmann C., Nucleic Acids Res. 23(1), 1995
PMID: 7532857
Philippe C, Benard L, Portier C, Westhof E, Ehresmann B, Ehresmann C., Nucleic Acids Res. 23(1), 1995
PMID: 7532857
A dynamic programming algorithm for RNA structure prediction including pseudoknots.
Rivas E, Eddy SR., J. Mol. Biol. 285(5), 1999
PMID: 9925784
Rivas E, Eddy SR., J. Mol. Biol. 285(5), 1999
PMID: 9925784
Export
0 Marked PublicationsWeb of Science
View record in Web of Science®Sources
PMID: 12824414
PubMed | Europe PMC
Google Scholar