XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis

Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR (2005)
BMC Genomics 6(1): 123.

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Background: Research using the model system Xenopus laevis has provided critical insights into the mechanisms of early vertebrate development and cell biology. Large scale sequencing efforts have provided an increasingly important resource for researchers. To provide full advantage of the available sequence, we have analyzed 350,468 Xenopus laevis Expressed Sequence Tags (ESTs) both to identify full length protein encoding sequences and to develop a unique database system to support comparative approaches between X. laevis and other model systems. Description: Using a suffix array based clustering approach, we have identified 25,971 clusters and 40,877 singleton sequences. Generation of a consensus sequence for each cluster resulted in 31,353 tentative contig and 4,801 singleton sequences. Using both BLASTX and FASTY comparison to five model organisms and the NR protein database, more than 15,000 sequences are predicted to encode full length proteins and these have been matched to publicly available IMAGE clones when available. Each sequence has been compared to the KOG database and ~67% of the sequences have been assigned a putative functional category. Based on sequence homology to mouse and human, putative GO annotations have been determined. Conclusion: The results of the analysis have been stored in a publicly available database XenDB http://bibiserv.techfak.uni-bielefeld.de/xendb/. A unique capability of the database is the ability to batch upload cross species queries to identify potential Xenopus homologues and their associated full length clones. Examples are provided including mapping of microarray results and application of 'in silico' analysis. The ability to quickly translate the results of various species into 'Xenopus-centric' information should greatly enhance comparative embryological approaches. Supplementary material can be found at http://bibiserv.techfak.uni-bielefeld.de/xendb/.
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BMC Genomics
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123
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Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR. XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics. 2005;6(1):123.
Sczyrba, A., Beckstette, M., Brivanlou, A. H., Giegerich, R., & Altmann, C. R. (2005). XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics, 6(1), 123. doi:10.1186/1471-2164-6-123
Sczyrba, A., Beckstette, M., Brivanlou, A. H., Giegerich, R., and Altmann, C. R. (2005). XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics 6, 123.
Sczyrba, A., et al., 2005. XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics, 6(1), p 123.
A. Sczyrba, et al., “XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis”, BMC Genomics, vol. 6, 2005, pp. 123.
Sczyrba, A., Beckstette, M., Brivanlou, A.H., Giegerich, R., Altmann, C.R.: XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics. 6, 123 (2005).
Sczyrba, Alexander, Beckstette, Michael, Brivanlou, Ali H., Giegerich, Robert, and Altmann, Curtis R. “XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis”. BMC Genomics 6.1 (2005): 123.
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Powers TR, Virk SM, Trujillo-Provencio C, Serrano EE., BMC Genomics 13(), 2012
PMID: 22676585
Expression profiles during dedifferentiation in newt lens regeneration revealed by expressed sequence tags.
Maki N, Martinson J, Nishimura O, Tarui H, Meller J, Tsonis PA, Agata K., Mol Vis 16(), 2010
PMID: 20090923
IsoSVM--distinguishing isoforms and paralogs on the protein level.
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PMID: 16519805

103 References

Daten bereitgestellt von Europe PubMed Central.

Complementary DNA sequencing: expressed sequence tags and human genome project.
Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF., Science 252(5013), 1991
PMID: 2047873
Computational prediction of eukaryotic protein-coding genes.
Zhang MQ., Nat. Rev. Genet. 3(9), 2002
PMID: 12209144
Finding genes in DNA with a Hidden Markov Model.
Henderson J, Salzberg S, Fasman KH., J. Comput. Biol. 4(2), 1997
PMID: 9228612
Heuristic approach to deriving models for gene finding.
Besemer J, Borodovsky M., Nucleic Acids Res. 27(19), 1999
PMID: 10481031
UniGene: a unified view of the transcriptome
Pontius JU, Wagner L, Schuler GD., 2003
STACK: Sequence Tag Alignment and Consensus Knowledgebase.
Christoffels A, van Gelder A, Greyling G, Miller R, Hide T, Hide W., Nucleic Acids Res. 29(1), 2001
PMID: 11125101
Frequent alternative splicing of human genes.
Mironov AA, Fickett JW, Gelfand MS., Genome Res. 9(12), 1999
PMID: 10613851
Alternative splicing in the testes.
Venables JP., Curr. Opin. Genet. Dev. 12(5), 2002
PMID: 12240623
Alternative splicing: combinatorial output from the genome.
Roberts GC, Smith CW., Curr Opin Chem Biol 6(3), 2002
PMID: 12023119
The latent transforming growth factor beta binding protein (LTBP) family.
Oklu R, Hesketh R., Biochem. J. 352 Pt 3(), 2000
PMID: 11104663
Integrin function and regulation in development.
Tarone G, Hirsch E, Brancaccio M, De Acetis M, Barberis L, Balzac F, Retta SF, Botta C, Altruda F, Silengo L, Retta F., Int. J. Dev. Biol. 44(6), 2000
PMID: 11061437
Signal transduction by fibroblast growth factor receptors.
Klint P, Claesson-Welsh L., Front. Biosci. 4(), 1999
PMID: 9989949
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.
Chevreux B, Pfisterer T, Drescher B, Driesel AJ, Muller WE, Wetter T, Suhai S., Genome Res. 14(6), 2004
PMID: 15140833
Snipping polymorphisms from large EST collections in barley (Hordeum vulgare L.).
Kota R, Rudd S, Facius A, Kolesov G, Thiel T, Zhang H, Stein N, Mayer K, Graner A., Mol. Genet. Genomics 270(1), 2003
PMID: 12938038
High-throughput identification, database storage and analysis of SNPs in EST sequences.
Useche FJ, Gao G, Harafey M, Rafalski A., Genome Inform 12(), 2001
PMID: 11791238
Reconciling the numbers: ESTs versus protein-coding genes.
Nekrutenko A., Mol. Biol. Evol. 21(7), 2004
PMID: 15034132
EST clustering error evaluation and correction.
Wang JP, Lindsay BG, Leebens-Mack J, Cui L, Wall K, Miller WC, dePamphilis CW., Bioinformatics 20(17), 2004
PMID: 15189818
Finishing the euchromatic sequence of the human genome.
International Human Genome Sequencing Consortium., Nature 431(7011), 2004
PMID: 15496913
Analysis of expressed sequence tags indicates 35,000 human genes.
Ewing B, Green P., Nat. Genet. 25(2), 2000
PMID: 10835644
Database resources of the National Center for Biotechnology Information: update.
Wheeler DL, Church DM, Edgar R, Federhen S, Helmberg W, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Suzek TO, Tatusova TA, Wagner L., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681353
Database resources of the National Center for Biotechnology.
Wheeler DL, Church DM, Federhen S, Lash AE, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Tatusova TA, Wagner L., Nucleic Acids Res. 31(1), 2003
PMID: 12519941
A gene map of the human genome.
Schuler GD, Boguski MS, Stewart EA, Stein LD, Gyapay G, Rice K, White RE, Rodriguez-Tome P, Aggarwal A, Bajorek E, Bentolila S, Birren BB, Butler A, Castle AB, Chiannilkulchai N, Chu A, Clee C, Cowles S, Day PJ, Dibling T, Drouot N, Dunham I, Duprat S, East C, Edwards C, Fan JB, Fang N, Fizames C, Garrett C, Green L, Hadley D, Harris M, Harrison P, Brady S, Hicks A, Holloway E, Hui L, Hussain S, Louis-Dit-Sully C, Ma J, MacGilvery A, Mader C, Maratukulam A, Matise TC, McKusick KB, Morissette J, Mungall A, Muselet D, Nusbaum HC, Page DC, Peck A, Perkins S, Piercy M, Qin F, Quackenbush J, Ranby S, Reif T, Rozen S, Sanders C, She X, Silva J, Slonim DK, Soderlund C, Sun WL, Tabar P, Thangarajah T, Vega-Czarny N, Vollrath D, Voyticky S, Wilmer T, Wu X, Adams MD, Auffray C, Walter NA, Brandon R, Dehejia A, Goodfellow PN, Houlgatte R, Hudson JR Jr, Ide SE, Iorio KR, Lee WY, Seki N, Nagase T, Ishikawa K, Nomura N, Phillips C, Polymeropoulos MH, Sandusky M, Schmitt K, Berry R, Swanson K, Torres R, Venter JC, Sikela JM, Beckmann JS, Weissenbach J, Myers RM, Cox DR, James MR, Bentley D, Deloukas P, Lander ES, Hudson TJ., Science 274(5287), 1996
PMID: 8849440
ESTablishing a human transcript map.
Boguski MS, Schuler GD., Nat. Genet. 10(4), 1995
PMID: 7670480
CAP3: A DNA sequence assembly program.
Huang X, Madan A., Genome Res. 9(9), 1999
PMID: 10508846

AUTHOR UNKNOWN, 2005
d2_cluster: a validated method for clustering EST and full-length cDNAsequences.
Burke J, Davison D, Hide W., Genome Res. 9(11), 1999
PMID: 10568753
Optimal exact string matching based on suffix arrays
Abouelhoda MI, Ohlebusch E, Kurtz S., 2002
The Enhanced Suffix Array and its Applications to Genome Analysis
Abouelhoda MI, Kurtz S, Ohlebusch E., 2002
Replacing Suffix Trees with Enhanced Suffix Arrays
Abouelhoda MI, Kurtz S, Ohlebusch E., 2004
An optimized protocol for analysis of EST sequences.
Liang F, Holt I, Pertea G, Karamycheva S, Salzberg SL, Quackenbush J., Nucleic Acids Res. 28(18), 2000
PMID: 10982889
Database resources of the National Center for Biotechnology Information.
Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Church DM, DiCuccio M, Edgar R, Federhen S, Helmberg W, Kenton DL, Khovayko O, Lipman DJ, Madden TL, Maglott DR, Ostell J, Pontius JU, Pruitt KD, Schuler GD, Schriml LM, Sequeira E, Sherry ST, Sirotkin K, Starchenko G, Suzek TO, Tatusov R, Tatusova TA, Wagner L, Yaschenko E., Nucleic Acids Res. 33(Database issue), 2005
PMID: 15608222
The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species.
Quackenbush J, Cho J, Lee D, Liang F, Holt I, Karamycheva S, Parvizi B, Pertea G, Sultana R, White J., Nucleic Acids Res. 29(1), 2001
PMID: 11125077
Vector Database Website
AUTHOR UNKNOWN, 2005
The Vmatch large scale sequence analysis software website
AUTHOR UNKNOWN, 2005
Repeat Masker Website and Server
Smit A, Green P., 2005

Beckstette M, Strothmann D, Homann R, Giegerich R, Kurtz S., 0
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
Kruger J, Sczyrba A, Kurtz S, Giegerich R., Nucleic Acids Res. 32(Web Server issue), 2004
PMID: 15215398
A greedy algorithm for aligning DNA sequences.
Zhang Z, Schwartz S, Wagner L, Miller W., J. Comput. Biol. 7(1-2), 2000
PMID: 10890397
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
Comparison of DNA sequences with protein sequences.
Pearson WR, Wood T, Zhang Z, Miller W., Genomics 46(1), 1997
PMID: 9403055
Genlight: Interactive high-throughput sequence analysis and comparative genomics
Beckstette M, Mailänder JT, Marhöfer RJ, Sczyrba A, Ohlebusch E, Giegerich R, Selzer PM., 2004
European Bioinformatics Institute International Protein Index Website
AUTHOR UNKNOWN, 2005
The International Protein Index: an integrated database for proteomics experiments.
Kersey PJ, Duarte J, Williams A, Karavidopoulou Y, Birney E, Apweiler R., Proteomics 4(7), 2004
PMID: 15221759
UniProt: the Universal Protein knowledgebase.
Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681372
Toward the development of a gene index to the human genome: an assessment of the nature of high-throughput EST sequence data.
Aaronson JS, Eckman B, Blevins RA, Borkowski JA, Myerson J, Imran S, Elliston KO., Genome Res. 6(9), 1996
PMID: 8889550
Generation and analysis of 280,000 human expressed sequence tags.
Hillier LD, Lennon G, Becker M, Bonaldo MF, Chiapelli B, Chissoe S, Dietrich N, DuBuque T, Favello A, Gish W, Hawkins M, Hultman M, Kucaba T, Lacy M, Le M, Le N, Mardis E, Moore B, Morris M, Parsons J, Prange C, Rifkin L, Rohlfing T, Schellenberg K, Bento Soares M, Tan F, Thierry-Meg J, Trevaskis E, Underwood K, Wohldman P, Waterston R, Wilson R, Marra M., Genome Res. 6(9), 1996
PMID: 8889549
Internal ribosome entry sites in cellular mRNAs: mystery of their existence.
Komar AA, Hatzoglou M., J. Biol. Chem. 280(25), 2005
PMID: 15749702
The Mammalian Gene Collection
AUTHOR UNKNOWN, 2005
The Xenopus Gene Collection
AUTHOR UNKNOWN, 2005
The Zebrafish Gene Collection
AUTHOR UNKNOWN, 2005
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G., Nat. Genet. 25(1), 2000
PMID: 10802651
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.
Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA., Genome Biol. 5(2), 2004
PMID: 14759257
Improved prediction of signal peptides: SignalP 3.0.
Bendtsen JD, Nielsen H, von Heijne G, Brunak S., J. Mol. Biol. 340(4), 2004
PMID: 15223320
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Krogh A, Larsson B, von Heijne G, Sonnhammer EL., J. Mol. Biol. 305(3), 2001
PMID: 11152613
A hidden Markov model for predicting transmembrane helices in protein sequences.
Sonnhammer EL, von Heijne G, Krogh A., Proc Int Conf Intell Syst Mol Biol 6(), 1998
PMID: 9783223
SAGEmap: a public gene expression resource.
Lash AE, Tolstoshev CM, Wagner L, Schuler GD, Strausberg RL, Riggins GJ, Altschul SF., Genome Res. 10(7), 2000
PMID: 10899154
The cancer genome anatomy project: online resources to reveal the molecular signatures of cancer.
Strausberg RL, Buetow KH, Greenhut SF, Grouse LH, Schaefer CF., Cancer Invest. 20(7-8), 2002
PMID: 12449737
Homeodomain proteins.
Gehring WJ, Affolter M, Burglin T., Annu. Rev. Biochem. 63(), 1994
PMID: 7979246
Caudalization of neural fate by tissue recombination and bFGF.
Cox WG, Hemmati-Brivanlou A., Development 121(12), 1995
PMID: 8575335
The Xenopus XIHbox 6 homeo protein, a marker of posterior neural induction, is expressed in proliferating neurons.
Wright CV, Morita EA, Wilkin DJ, De Robertis EM., Development 109(1), 1990
PMID: 1976504
JGI Xenopustropicalis Web Site
AUTHOR UNKNOWN, 2005
Cancer Genome Anatomy Project
AUTHOR UNKNOWN, 2005
Serial analysis of gene expression.
Velculescu VE, Zhang L, Vogelstein B, Kinzler KW., Science 270(5235), 1995
PMID: 7570003
An anatomy of normal and malignant gene expression.
Boon K, Osorio EC, Greenhut SF, Schaefer CF, Shoemaker J, Polyak K, Morin PJ, Buetow KH, Strausberg RL, De Souza SJ, Riggins GJ., Proc. Natl. Acad. Sci. U.S.A. 99(17), 2002
PMID: 12119410
A public database for gene expression in human cancers.
Lal A, Lash AE, Altschul SF, Velculescu V, Zhang L, McLendon RE, Marra MA, Prange C, Morin PJ, Polyak K, Papadopoulos N, Vogelstein B, Kinzler KW, Strausberg RL, Riggins GJ., Cancer Res. 59(21), 1999
PMID: 10554005
Sox10, a novel transcriptional modulator in glial cells.
Kuhlbrodt K, Herbarth B, Sock E, Hermans-Borgmeyer I, Wegner M., J. Neurosci. 18(1), 1998
PMID: 9412504
Glial-defined rhombomere boundaries in developing Xenopus hindbrain.
Yoshida M, Colman DR., J. Comp. Neurol. 424(1), 2000
PMID: 10888738
The role of notch in promoting glial and neural stem cell fates.
Gaiano N, Fishell G., Annu. Rev. Neurosci. 25(), 2002
PMID: 12052917
Reliability of gene expression ratios for cDNA microarrays in multiconditional experiments with a reference design.
Konig R, Baldessari D, Pollet N, Niehrs C, Eils R., Nucleic Acids Res. 32(3), 2004
PMID: 14966261
Exposure to the herbicide acetochlor alters thyroid hormone-dependent gene expression and metamorphosis in Xenopus Laevis.
Crump D, Werry K, Veldhoen N, Van Aggelen G, Helbing CC., Environ. Health Perspect. 110(12), 2002
PMID: 12460798
Microarray optimizations: increasing spot accuracy and automated identification of true microarray signals.
Tran PH, Peiffer DA, Shin Y, Meek LM, Brody JP, Cho KW., Nucleic Acids Res. 30(12), 2002
PMID: 12060692
Microarray-based analysis of early development in Xenopus laevis.
Altmann CR, Bell E, Sczyrba A, Pun J, Bekiranov S, Gaasterland T, Brivanlou AH., Dev. Biol. 236(1), 2001
PMID: 11456444
Global analysis of RAR-responsive genes in the Xenopus neurula using cDNA microarrays.
Arima K, Shiotsugu J, Niu R, Khandpur R, Martinez M, Shin Y, Koide T, Cho KW, Kitayama A, Ueno N, Chandraratna RA, Blumberg B., Dev. Dyn. 232(2), 2005
PMID: 15614783
A Xenopus DNA microarray approach to identify novel direct BMP target genes involved in early embryonic development.
Peiffer DA, Von Bubnoff A, Shin Y, Kitayama A, Mochii M, Ueno N, Cho KW., Dev. Dyn. 232(2), 2005
PMID: 15614776
Identification of neural genes using Xenopus DNA microarrays.
Shin Y, Kitayama A, Koide T, Peiffer DA, Mochii M, Liao A, Ueno N, Cho KW., Dev. Dyn. 232(2), 2005
PMID: 15614765
Screening of FGF target genes in Xenopus by microarray: temporal dissection of the signalling pathway using a chemical inhibitor.
Chung HA, Hyodo-Miura J, Kitayama A, Terasaka C, Nagamune T, Ueno N., Genes Cells 9(8), 2004
PMID: 15298682
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Edgar R, Domrachev M, Lash AE., Nucleic Acids Res. 30(1), 2002
PMID: 11752295
Analysis of the eye developmental pathway in Drosophila using DNA microarrays.
Michaut L, Flister S, Neeb M, White KP, Certa U, Gehring WJ., Proc. Natl. Acad. Sci. U.S.A. 100(7), 2003
PMID: 12655063
Pax 6: mastering eye morphogenesis and eye evolution.
Gehring WJ, Ikeo K., Trends Genet. 15(9), 1999
PMID: 10461206
Induction of ectopic eyes by targeted expression of the eyeless gene in Drosophila.
Halder G, Callaerts P, Gehring WJ., Science 267(5205), 1995
PMID: 7892602
Pax6 induces ectopic eyes in a vertebrate.
Chow RL, Altmann CR, Lang RA, Hemmati-Brivanlou A., Development 126(19), 1999
PMID: 10477290
The NCBI Gene Expression Omnibus
AUTHOR UNKNOWN, 2005
A gene atlas of the mouse and human protein-encoding transcriptomes.
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB., Proc. Natl. Acad. Sci. U.S.A. 101(16), 2004
PMID: 15075390
Initial sequencing and comparative analysis of the mouse genome.
Mouse Genome Sequencing Consortium, Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigo R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf I, Kucherlapati RS, Kulbokas EJ, Kulp D, Landers T, Leger JP, Leonard S, Letunic I, Levine R, Li J, Li M, Lloyd C, Lucas S, Ma B, Maglott DR, Mardis ER, Matthews L, Mauceli E, Mayer JH, McCarthy M, McCombie WR, McLaren S, McLay K, McPherson JD, Meldrim J, Meredith B, Mesirov JP, Miller W, Miner TL, Mongin E, Montgomery KT, Morgan M, Mott R, Mullikin JC, Muzny DM, Nash WE, Nelson JO, Nhan MN, Nicol R, Ning Z, Nusbaum C, O'Connor MJ, Okazaki Y, Oliver K, Overton-Larty E, Pachter L, Parra G, Pepin KH, Peterson J, Pevzner P, Plumb R, Pohl CS, Poliakov A, Ponce TC, Ponting CP, Potter S, Quail M, Reymond A, Roe BA, Roskin KM, Rubin EM, Rust AG, Santos R, Sapojnikov V, Schultz B, Schultz J, Schwartz MS, Schwartz S, Scott C, Seaman S, Searle S, Sharpe T, Sheridan A, Shownkeen R, Sims S, Singer JB, Slater G, Smit A, Smith DR, Spencer B, Stabenau A, Stange-Thomann N, Sugnet C, Suyama M, Tesler G, Thompson J, Torrents D, Trevaskis E, Tromp J, Ucla C, Ureta-Vidal A, Vinson JP, Von Niederhausern AC, Wade CM, Wall M, Weber RJ, Weiss RB, Wendl MC, West AP, Wetterstrand K, Wheeler R, Whelan S, Wierzbowski J, Willey D, Williams S, Wilson RK, Winter E, Worley KC, Wyman D, Yang S, Yang SP, Zdobnov EM, Zody MC, Lander ES., Nature 420(6915), 2002
PMID: 12466850
Employment opportunities for non-coding RNAs.
Morey C, Avner P., FEBS Lett. 567(1), 2004
PMID: 15165889
Genome wide identification and classification of alternative splicing based on EST data.
Gupta S, Zink D, Korn B, Vingron M, Haas SA., Bioinformatics 20(16), 2004
PMID: 15117759
Widespread occurrence of antisense transcription in the human genome.
Yelin R, Dahary D, Sorek R, Levanon EY, Goldstein O, Shoshan A, Diber A, Biton S, Tamir Y, Khosravi R, Nemzer S, Pinner E, Walach S, Bernstein J, Savitsky K, Rotman G., Nat. Biotechnol. 21(4), 2003
PMID: 12640466
Non-coding RNAs: the architects of eukaryotic complexity.
Mattick JS., EMBO Rep. 2(11), 2001
PMID: 11713189
Trans-NIH Xenopus Initiative Website
AUTHOR UNKNOWN, 2005
Xenbase Xenopus Web Resource Website
AUTHOR UNKNOWN, 2005

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