Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes

Weidner S, Arnold W, Pühler A (1996)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 62(3): 766-771.

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APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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62
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3
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766-771
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Weidner S, Arnold W, Pühler A. Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 1996;62(3):766-771.
Weidner, S., Arnold, W., & Pühler, A. (1996). Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 62(3), 766-771.
Weidner, S., Arnold, W., and Pühler, A. (1996). Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 62, 766-771.
Weidner, S., Arnold, W., & Pühler, A., 1996. Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 62(3), p 766-771.
S. Weidner, W. Arnold, and A. Pühler, “Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, vol. 62, 1996, pp. 766-771.
Weidner, S., Arnold, W., Pühler, A.: Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 62, 766-771 (1996).
Weidner, Stefan, Arnold, Walter, and Pühler, Alfred. “Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes”. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 62.3 (1996): 766-771.

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Daten bereitgestellt von Europe PubMed Central.

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Mohr KI, Moradi A, Glaeser SP, Kämpfer P, Gemperlein K, Nübel U, Schumann P, Müller R, Wink J., Int J Syst Evol Microbiol 68(3), 2018
PMID: 29458458
Metatranscriptomics and Amplicon Sequencing Reveal Mutualisms in Seagrass Microbiomes.
Crump BC, Wojahn JM, Tomas F, Mueller RS., Front Microbiol 9(), 2018
PMID: 29599758
Ketobacter alkanivorans gen. nov., sp. nov., an n-alkane-degrading bacterium isolated from seawater.
Kim SH, Kim JG, Jung MY, Kim SJ, Gwak JH, Yu WJ, Roh SW, Kim YH, Rhee SK., Int J Syst Evol Microbiol 68(7), 2018
PMID: 29809120
Archaea Dominate the Ammonia-Oxidizing Community in Deep-Sea Sediments of the Eastern Indian Ocean-from the Equator to the Bay of Bengal.
Wang J, Kan J, Zhang X, Xia Z, Zhang X, Qian G, Miao Y, Leng X, Sun J., Front Microbiol 8(), 2017
PMID: 28360898
Isolation of Viable but Non-culturable Bacteria from Printing and Dyeing Wastewater Bioreactor Based on Resuscitation Promoting Factor.
Jin Y, Gan G, Yu X, Wu D, Zhang L, Yang N, Hu J, Liu Z, Zhang L, Hong H, Yan X, Liang Y, Ding L, Pan Y., Curr Microbiol 74(7), 2017
PMID: 28417187
Nitrogen-fixing rhizobial strains isolated from Desmodium incanum DC in Argentina: Phylogeny, biodiversity and symbiotic ability.
Toniutti MA, Fornasero LV, Albicoro FJ, Martini MC, Draghi W, Alvarez F, Lagares A, Pensiero JF, Del Papa MF., Syst Appl Microbiol 40(5), 2017
PMID: 28648724
Kiloniella antarctica sp. nov., isolated from a polynya of Amundsen Sea in Western Antarctic Sea.
Si OJ, Yang HY, Hwang CY, Kim SJ, Choi SB, Kim JG, Jung MY, Kim SG, Roh SW, Rhee SK., Int J Syst Evol Microbiol 67(7), 2017
PMID: 28708058
The Seagrass Holobiont and Its Microbiome.
Ugarelli K, Chakrabarti S, Laas P, Stingl U., Microorganisms 5(4), 2017
PMID: 29244764
Aggregicoccus edonensis gen. nov., sp. nov., an unusually aggregating myxobacterium isolated from a soil sample.
Sood S, Awal RP, Wink J, Mohr KI, Rohde M, Stadler M, Kämpfer P, Glaeser SP, Schumann P, Garcia R, Müller R., Int J Syst Evol Microbiol 65(pt 3), 2015
PMID: 24591423
Characterization of a collection of plasmid-containing bacteria isolated from an on-farm biopurification system used for pesticide removal.
Martini MC, Albicoro FJ, Nour E, Schlüter A, van Elsas JD, Springael D, Smalla K, Pistorio M, Lagares A, Del Papa MF., Plasmid 80(), 2015
PMID: 25957823
FN-Identify: Novel Restriction Enzymes-Based Method for Bacterial Identification in Absence of Genome Sequencing.
Awad M, Ouda O, El-Refy A, El-Feky FA, Mosa KA, Helmy M., Adv Bioinformatics 2015(), 2015
PMID: 26880910
Isolation of bacterial strains capable of sulfamethoxazole mineralization from an acclimated membrane bioreactor.
Bouju H, Ricken B, Beffa T, Corvini PF, Kolvenbach BA., Appl Environ Microbiol 78(1), 2012
PMID: 22020509
Microbial regulation in gorgonian corals.
Hunt LR, Smith SM, Downum KR, Mydlarz LD., Mar Drugs 10(6), 2012
PMID: 22822369
Cold active β-galactosidase from Thalassospira sp. 3SC-21 to use in milk lactose hydrolysis: a novel source from deep waters of Bay-of-Bengal.
Ghosh M, Pulicherla KK, Rekha VP, Raja PK, Sambasiva Rao KR., World J Microbiol Biotechnol 28(9), 2012
PMID: 22806727
Cold active β-galactosidase from Thalassospira sp. 3SC-21 to use in milk lactose hydrolysis: a novel source from deep waters of Bay-of-Bengal
Ghosh M, Pulicherla KK, Rekha VPB, Raja PK, Sambasiva Rao KRS., World J Microbiol Biotechnol 28(9), 2012
PMID: IND44745615
Functional diversity of bacteria in a ferruginous hydrothermal sediment.
Handley KM, Boothman C, Mills RA, Pancost RD, Lloyd JR., ISME J 4(9), 2010
PMID: 20410934
Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing.
Kröber M, Bekel T, Diaz NN, Goesmann A, Jaenicke S, Krause L, Miller D, Runte KJ, Viehöver P, Pühler A, Schlüter A., J Biotechnol 142(1), 2009
PMID: 19480946
Ammonia-oxidizing archaea: important players in paddy rhizosphere soil?
Chen XP, Zhu YG, Xia Y, Shen JP, He JZ., Environ Microbiol 10(8), 2008
PMID: 18430011
Attached bacterial populations shared by four species of aquatic angiosperms.
Crump BC, Koch EW., Appl Environ Microbiol 74(19), 2008
PMID: 18676705
Effects on poultry and livestock of feed contamination with bacteria and fungi
Maciorowski KG, Herrera P, Jones FT, Pillai SD, Ricke SC., Anim Feed Sci Technol 133(1-2), 2007
PMID: IND43864818
Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis.
Sipos R, Székely AJ, Palatinszky M, Révész S, Márialigeti K, Nikolausz M., FEMS Microbiol Ecol 60(2), 2007
PMID: 17343679
Genotypic microbial community profiling: a critical technical review.
Nocker A, Burr M, Camper AK., Microb Ecol 54(2), 2007
PMID: 17345133
Bacterial communities associated with the mucopolysaccharide layers of three coral species affected and unaffected with dark spots disease.
Gil-Agudelo DL, Fonseca DP, Weil E, Garzón-Ferreira J, Smith GW., Can J Microbiol 53(4), 2007
PMID: 17612600
Diversity of gut bacteria of Reticulitermes flavipes as examined by 16S rRNA gene sequencing and amplified rDNA restriction analysis.
Fisher M, Miller D, Brewster C, Husseneder C, Dickerman A., Curr Microbiol 55(3), 2007
PMID: 17657534
IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes.
Schlüter A, Krahn I, Kollin F, Bönemann G, Stiens M, Szczepanowski R, Schneiker S, Pühler A., Appl Environ Microbiol 73(20), 2007
PMID: 17675426
Molecular diversity studies of bacterial communities of oil polluted microbial mats from the Etang de Berre (France).
Hernandez-Raquet G, Budzinski H, Caumette P, Dabert P, Le Ménach K, Muyzer G, Duran R., FEMS Microbiol Ecol 58(3), 2006
PMID: 17117996
A survey of the methods for the characterization of microbial consortia and communities.
Spiegelman D, Whissell G, Greer CW., Can J Microbiol 51(5), 2005
PMID: 16088332
Genetic relationship of Sinorhizobium meliloti and Sinorhizobium medicae strains isolated from Caucasian region.
Biondi EG, Pilli E, Giuntini E, Roumiantseva ML, Andronov EE, Onichtchouk OP, Kurchak ON, Simarov BV, Dzyubenko NI, Dzyubenko NI, Mengoni A, Bazzicalupo M., FEMS Microbiol Lett 220(2), 2003
PMID: 12670682
Microbial communities and their interactions in soil and rhizosphere ecosystems.
Kent AD, Triplett EW., Annu Rev Microbiol 56(), 2002
PMID: 12142496
The etiology of white pox, a lethal disease of the Caribbean elkhorn coral, Acropora palmata.
Patterson KL, Porter JW, Ritchie KB, Polson SW, Mueller E, Peters EC, Santavy DL, Smith GW., Proc Natl Acad Sci U S A 99(13), 2002
PMID: 12077296
Diversity of Sinorhizobium meliloti from the Central Asian Alfalfa Gene Center.
Roumiantseva ML, Andronov EE, Sharypova LA, Dammann-Kalinowski T, Keller M, Young JP, Simarov BV., Appl Environ Microbiol 68(9), 2002
PMID: 12200335
Screening for trbB- and traG-like sequences by PCR for the detection of conjugative plasmids in bacterial soil isolates.
Disqué-Kochem C, Battermann A, Strätz M, Dreiseikelmann B., Microbiol Res 156(2), 2001
PMID: 11572456
Does blood of healthy subjects contain bacterial ribosomal DNA?
Nikkari S, McLaughlin IJ, Bi W, Dodge DE, Relman DA., J Clin Microbiol 39(5), 2001
PMID: 11326021
Genetic analyses of Acanthamoeba isolates from contact lens storage cases of students in Seoul, Korea.
Yu HS, Choi KH, Kim HK, Kong HH, Chung DI., Korean J Parasitol 39(2), 2001
PMID: 11441503
Monitoring of the evolving diversity of the microbial community present in rotifer cultures.
Rombaut G, Suantika G, Boon N, Maertens S, Dhert P, Top E, Sorgeloos P, Verstraete W., Aquaculture 198(3/4), 2001
PMID: IND23225751
Succession of microbial communities during a biostimulation process as evaluated by DGGE and clone library analyses.
Ogino A, Koshikawa H, Nakahara T, Uchiyama H., J Appl Microbiol 91(4), 2001
PMID: 11576299
Microbial diversity of cultivatable bacteria associated with the North Sea bryozoan Flustra foliacea.
Pukall R, Kramer I, Rohde M, Stackebrandt E., Syst Appl Microbiol 24(4), 2001
PMID: 11876370
Cultivatable microbial biodiversity: gnawing at the Gordian knot.
Tindall BJ, Brambilla E, Steffen M, Neumann R, Pukall R, Kroppenstedt RM, Stackebrandt E., Environ Microbiol 2(3), 2000
PMID: 11200432
Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom.
González JM, Simó R, Massana R, Covert JS, Casamayor EO, Pedrós-Alió C, Moran MA., Appl Environ Microbiol 66(10), 2000
PMID: 11010865
Phylogenetic analysis of an anaerobic, trichlorobenzene-transforming microbial consortium.
von Wintzingerode F, Selent B, Hegemann W, Göbel UB., Appl Environ Microbiol 65(1), 1999
PMID: 9872791
Characterization of microbial communities using randomly amplified polymorphic DNA (RAPD).
Franklin RB, Taylor DR, Mills AL., J Microbiol Methods 35(3), 1999
PMID: 10333074
Use of the 16S--23S ribosomal genes spacer region in studies of prokaryotic diversity.
García-Martínez J, Acinas SG, Antón AI, Rodríguez-Valera F., J Microbiol Methods 36(1-2), 1999
PMID: 10353800
Molecular characterization of a toluene-degrading methanogenic consortium.
Ficker M, Krastel K, Orlicky S, Edwards E., Appl Environ Microbiol 65(12), 1999
PMID: 10584020
Phenotypic and genetic diversity within a colony morphotype.
Lebaron P, Ghiglione JF, Fajon C, Batailler N, Normand P., FEMS Microbiol Lett 160(1), 1998
PMID: 9495024
A highly selective PCR protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples.
Widmer F, Seidler RJ, Gillevet PM, Watrud LS, Di Giovanni GD., Appl Environ Microbiol 64(7), 1998
PMID: 9647828
Interactions between metals and microbial communities in New Bedford Harbor, Massachusetts.
Ford T, Sorci J, Ika R, Shine J., Environ Health Perspect 106 Suppl 4(), 1998
PMID: 9703489
Molecular phylogeny of Archaea from soil.
Bintrim SB, Donohue TJ, Handelsman J, Roberts GP, Goodman RM., Proc Natl Acad Sci U S A 94(1), 1997
PMID: 8990199
A physical and genetic map of the Corynebacterium glutamicum ATCC 13032 chromosome.
Bathe B, Kalinowski J, Pühler A., Mol Gen Genet 252(3), 1996
PMID: 8842145

21 References

Daten bereitgestellt von Europe PubMed Central.

Rapid identification of bacteria of the Comamonadaceae with amplified ribosomal DNA-restriction analysis (ARDRA).
Vaneechoutte M, Rossau R, De Vos P, Gillis M, Janssens D, Paepe N, De Rouck A, Fiers T, Claeys G, Kersters K., FEMS Microbiol. Lett. 72(3), 1992
PMID: 1354195
The ribosomal database project.
Larsen N, Olsen GJ, Maidak BL, McCaughey MJ, Overbeek R, Macke TJ, Marsh TL, Woese CR., Nucleic Acids Res. 21(13), 1993
PMID: 8332524
Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing.
Britschgi TB, Giovannoni SJ., Appl. Environ. Microbiol. 57(6), 1991
PMID: 1714704
Fast and sensitive silver staining of DNA in polyacrylamide gels.
Bassam BJ, Caetano-Anolles G, Gresshoff PM., Anal. Biochem. 196(1), 1991
PMID: 1716076
16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community.
Ward DM, Weller R, Bateson MM., FEMS Microbiol. Rev. 6(2-3), 1990
PMID: 2117459
A simplified protocol for fast plasmid DNA sequencing.
Zimmermann J, Voss H, Schwager C, Stegemann J, Erfle H, Stucky K, Kristensen T, Ansorge W., Nucleic Acids Res. 18(4), 1990
PMID: 2315028
Genetic diversity in Sargasso Sea bacterioplankton.
Giovannoni SJ, Britschgi TB, Moyer CL, Field KG., Nature 345(6270), 1990
PMID: 2330053
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.
Lane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML, Pace NR., Proc. Natl. Acad. Sci. U.S.A. 82(20), 1985
PMID: 2413450
Bacterial evolution.
Woese CR., Microbiol. Rev. 51(2), 1987
PMID: 2439888
Ribosomal ribonucleic acid gene restriction patterns as potential taxonomic tools.
Grimont F, Grimont PA., Ann. Inst. Pasteur Microbiol. 137B(2), 1986
PMID: 2446639
Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase.
Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA., Science 239(4839), 1988
PMID: 2448875
Mathematical model for studying genetic variation in terms of restriction endonucleases.
Nei M, Li WH., Proc. Natl. Acad. Sci. U.S.A. 76(10), 1979
PMID: 291943
Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.
Brosius J, Palmer ML, Kennedy PJ, Noller HF., Proc. Natl. Acad. Sci. U.S.A. 75(10), 1978
PMID: 368799
Response of marine bacterioplankton to differential filtration and confinement.
Ferguson RL, Buckley EN, Palumbo AV., Appl. Environ. Microbiol. 47(1), 1984
PMID: 6696422
Phylogenetic identification and in situ detection of individual microbial cells without cultivation.
Amann RI, Ludwig W, Schleifer KH., Microbiol. Rev. 59(1), 1995
PMID: 7535888
The phylogeny of marine and freshwater caulobacters reflects their habitat.
Stahl DA, Key R, Flesher B, Smit J., J. Bacteriol. 174(7), 1992
PMID: 1551840

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