Complete genome sequence and analysis of Wolinella succinogenes

Baar C, Eppinger M, Raddatz G, Simon J, Lanz C, Klimmek O, Nandakumar R, Gross R, Rosinus A, Keller H, Jagtap P, et al. (2003)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(20): 11690-11695.

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To understand the origin and emergence of pathogenic bacteria, knowledge of the genetic inventory from their nonpathogenic relatives is a prerequisite. Therefore, the 2.11-megabase genome sequence of Wolinella succinogenes, which is closely related to the pathogenic bacteria Helicobacter pylori and Campylobacter jejuni, was determined. Despite being considered nonpathogenic to its bovine host, W. succinogenes holds an extensive repertoire of genes homologous to known bacterial virulence factors. Many of these genes have been acquired by lateral gene transfer, because part of the virulence plasmid pVir and an Winked glycosylation gene cluster were found to be syntenic between C jejuni and genomic islands of W succinogenes. In contrast to other host-adapted bacteria, W succinogenes does harbor the highest density of bacterial sensor kinases found in any bacterial genome to date, together with an elaborate signaling circuitry of the GGDEF family of proteins. Because the analysis of the W succinogenes genome also revealed genes related to soil- and plant-associated bacteria such as the nif genes, W succinogenes may represent a member of the epsilon proteobacteria with a life cycle outside its host.
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Baar C, Eppinger M, Raddatz G, et al. Complete genome sequence and analysis of Wolinella succinogenes. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003;100(20):11690-11695.
Baar, C., Eppinger, M., Raddatz, G., Simon, J., Lanz, C., Klimmek, O., Nandakumar, R., et al. (2003). Complete genome sequence and analysis of Wolinella succinogenes. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100(20), 11690-11695. doi:10.1073/pnas.1932838100
Baar, C., Eppinger, M., Raddatz, G., Simon, J., Lanz, C., Klimmek, O., Nandakumar, R., Gross, R., Rosinus, A., Keller, H., et al. (2003). Complete genome sequence and analysis of Wolinella succinogenes. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100, 11690-11695.
Baar, C., et al., 2003. Complete genome sequence and analysis of Wolinella succinogenes. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100(20), p 11690-11695.
C. Baar, et al., “Complete genome sequence and analysis of Wolinella succinogenes”, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 100, 2003, pp. 11690-11695.
Baar, C., Eppinger, M., Raddatz, G., Simon, J., Lanz, C., Klimmek, O., Nandakumar, R., Gross, R., Rosinus, A., Keller, H., Jagtap, P., Linke, B., Meyer, F., Lederer, H., Schuster, S.C.: Complete genome sequence and analysis of Wolinella succinogenes. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 100, 11690-11695 (2003).
Baar, C., Eppinger, M., Raddatz, G., Simon, J., Lanz, C., Klimmek, O., Nandakumar, R., Gross, R., Rosinus, A., Keller, H., Jagtap, P., Linke, Burkhard, Meyer, F., Lederer, H., and Schuster, S. C. “Complete genome sequence and analysis of Wolinella succinogenes”. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100.20 (2003): 11690-11695.
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123 Citations in Europe PMC

Data provided by Europe PubMed Central.

Whole-genome prokaryotic phylogeny.
Henz SR, Huson DH, Auch AF, Nieselt-Struwe K, Schuster SC., Bioinformatics 21(10), 2005
PMID: 15166018
BACCardI--a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F, Schuster SC., Bioinformatics 21(7), 2005
PMID: 15514001
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species.
Fouts DE, Mongodin EF, Mandrell RE, Miller WG, Rasko DA, Ravel J, Brinkac LM, DeBoy RT, Parker CT, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Sullivan SA, Shetty JU, Ayodeji MA, Shvartsbeyn A, Schatz MC, Badger JH, Fraser CM, Nelson KE., PLoS Biol 3(1), 2005
PMID: 15660156
Protein glycosylation in bacterial mucosal pathogens.
Szymanski CM, Wren BW., Nat Rev Microbiol 3(3), 2005
PMID: 15738950
Functional analysis of the Campylobacter jejuni N-linked protein glycosylation pathway.
Linton D, Dorrell N, Hitchen PG, Amber S, Karlyshev AV, Morris HR, Dell A, Valvano MA, Aebi M, Wren BW., Mol Microbiol 55(6), 2005
PMID: 15752194
Functional divergence and horizontal transfer of type IV secretion systems.
Frank AC, Alsmark CM, Thollesson M, Andersson SG., Mol Biol Evol 22(5), 2005
PMID: 15746011
Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: implications for phylogenetic inference and systematics.
Dewhirst FE, Shen Z, Scimeca MS, Stokes LN, Boumenna T, Chen T, Paster BJ, Fox JG., J Bacteriol 187(17), 2005
PMID: 16109952
Gain and loss of multiple genes during the evolution of Helicobacter pylori.
Gressmann H, Linz B, Ghai R, Pleissner KP, Schlapbach R, Yamaoka Y, Kraft C, Suerbaum S, Meyer TF, Achtman M., PLoS Genet 1(4), 2005
PMID: 16217547
Identification of 42 possible cytochrome C genes in the Shewanella oneidensis genome and characterization of six soluble cytochromes.
Meyer TE, Tsapin AI, Vandenberghe I, de Smet L, Frishman D, Nealson KH, Cusanovich MA, van Beeumen JJ., OMICS 8(1), 2004
PMID: 15107237
The power in comparison.
Nierman WC, Fraser CM., Trends Microbiol 12(2), 2004
PMID: 15040325
Genomic islands in pathogenic and environmental microorganisms.
Dobrindt U, Hochhut B, Hentschel U, Hacker J., Nat Rev Microbiol 2(5), 2004
PMID: 15100694
N-linked protein glycosylation is required for full competence in Campylobacter jejuni 81-176.
Larsen JC, Szymanski C, Guerry P., J Bacteriol 186(19), 2004
PMID: 15375132
Comparative analysis of four Campylobacterales.
Eppinger M, Baar C, Raddatz G, Huson DH, Schuster SC., Nat Rev Microbiol 2(11), 2004
PMID: 15494744
Pathogenomics.
Crossman L, Cerdeño-Tárraga A, Bentley S, Parkhill J., Nat Rev Microbiol 1(3), 2003
PMID: 15035020

66 References

Data provided by Europe PubMed Central.

N-linked glycosylation in Campylobacter jejuni and its functional transfer into E. coli.
Wacker M, Linton D, Hitchen PG, Nita-Lazar M, Haslam SM, North SJ, Panico M, Morris HR, Dell A, Wren BW, Aebi M., Science 298(5599), 2002
PMID: 12459590
Evidence for a system of general protein glycosylation in Campylobacter jejuni.
Szymanski CM, Yao R, Ewing CP, Trust TJ, Guerry P., Mol. Microbiol. 32(5), 1999
PMID: 10361304
Structure of the N-linked glycan present on multiple glycoproteins in the Gram-negative bacterium, Campylobacter jejuni.
Young NM, Brisson JR, Kelly J, Watson DC, Tessier L, Lanthier PH, Jarrell HC, Cadotte N, St Michael F, Aberg E, Szymanski CM., J. Biol. Chem. 277(45), 2002
PMID: 12186869

AUTHOR UNKNOWN, 1995
Helicobacter pylori: a eubacterium lacking the stringent response.
Scoarughi GL, Cimmino C, Donini P., J. Bacteriol. 181(2), 1999
PMID: 9882669

AUTHOR UNKNOWN, 2001
SMART, a simple modular architecture research tool: identification of signaling domains.
Schultz J, Milpetz F, Bork P, Ponting CP., Proc. Natl. Acad. Sci. U.S.A. 95(11), 1998
PMID: 9600884
Osmotic stress response in Dictyostelium is mediated by cAMP.
Ott A, Oehme F, Keller H, Schuster SC., EMBO J. 19(21), 2000
PMID: 11060029

AUTHOR UNKNOWN, 1998
Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: genetic organization and occurrence of conserved domains in isoenzymes.
Tal R, Wong HC, Calhoon R, Gelfand D, Fear AL, Volman G, Mayer R, Ross P, Amikam D, Weinhouse H, Cohen A, Sapir S, Ohana P, Benziman M., J. Bacteriol. 180(17), 1998
PMID: 9721278
Helicobacter pylori motility.
O'Toole PW, Lane MC, Porwollik S., Microbes Infect. 2(10), 2000
PMID: 11008110
Protein kinases and protein phosphatases in prokaryotes: a genomic perspective.
Kennelly PJ., FEMS Microbiol. Lett. 206(1), 2002
PMID: 11786249
The presence of N2-fixing bacteria in the intestines of man and animals.
Bergersen FJ, Hipsley EH., J. Gen. Microbiol. 60(1), 1970
PMID: 4922762
Regulations of nitrogen fixation by ammonium in diazotrophic species of Proteobacteria.
Rudnick P, Meletzus D, Green A, He L, Kennedy C., Soil Biol. Biochem. 29(5/6), 1997
PMID: IND20623358

AUTHOR UNKNOWN, 2001

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