Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems

Golyshin PN, Martins Dos Santos VA, Kaiser O, Ferrer M, Sabirova YS, Lünsdorf H, Chernikova TN, Golyshina OV, Yakimov MM, Pühler A, Timmis KN (2003)
Journal of Biotechnology 106(2-3): 215-220.

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In this paper, we provide background to the genome sequencing project of Alcanivorax borkumensis, which is a marine bacterium that uses exclusively petroleum oil hydrocarbons as sources of carbon and energy (therefore designated "hydrocarbonoclastic"). It is found in low numbers in all oceans of the world and in high numbers in oil-contaminated waters. Its ubiquity and unusual physiology suggest it is globally important in the removal of hydrocarbons from polluted marine systems. A functional genomics analysis of Alcanivorax borkumensis strain SK2 was recently initiated, and its genome sequence has just been completed. Annotation of the genome, metabolome modelling, and functional genomics, will soon reveal important insights into the genomic basis of the properties and physiology of this fascinating and globally important bacterium. (C) 2003 Elsevier B.V. All rights reserved.
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Golyshin PN, Martins Dos Santos VA, Kaiser O, et al. Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology. 2003;106(2-3):215-220.
Golyshin, P. N., Martins Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lünsdorf, H., Chernikova, T. N., et al. (2003). Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology, 106(2-3), 215-220. doi:10.1016/j.jbiotec.2003.07.013
Golyshin, P. N., Martins Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lünsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Pühler, A., et al. (2003). Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology 106, 215-220.
Golyshin, P.N., et al., 2003. Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology, 106(2-3), p 215-220.
P.N. Golyshin, et al., “Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems”, Journal of Biotechnology, vol. 106, 2003, pp. 215-220.
Golyshin, P.N., Martins Dos Santos, V.A., Kaiser, O., Ferrer, M., Sabirova, Y.S., Lünsdorf, H., Chernikova, T.N., Golyshina, O.V., Yakimov, M.M., Pühler, A., Timmis, K.N.: Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology. 106, 215-220 (2003).
Golyshin, P. N., Martins Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lünsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Pühler, Alfred, and Timmis, K. N. “Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems”. Journal of Biotechnology 106.2-3 (2003): 215-220.
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32 Citations in Europe PMC

Data provided by Europe PubMed Central.

Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria.
Kalscheuer R, Stöveken T, Malkus U, Reichelt R, Golyshin PN, Sabirova JS, Ferrer M, Timmis KN, Steinbüchel A., J Bacteriol 189(3), 2007
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Ocean's elevenses.
Seth-Smith H., Nat Rev Microbiol 5(1), 2007
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Marine microorganisms make a meal of oil.
Head IM, Jones DM, Röling WF., Nat Rev Microbiol 4(3), 2006
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Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
Schneiker S, Martins dos Santos VA, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter FJ, Weidner S, Kaiser O, Golyshin PN., Nat Biotechnol 24(8), 2006
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Mutation in a "tesB-like" hydroxyacyl-coenzyme A-specific thioesterase gene causes hyperproduction of extracellular polyhydroxyalkanoates by Alcanivorax borkumensis SK2.
Sabirova JS, Ferrer M, Lünsdorf H, Wray V, Kalscheuer R, Steinbüchel A, Timmis KN, Golyshin PN., J Bacteriol 188(24), 2006
PMID: 16997960
Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin.
Ferrer M, Golyshina OV, Chernikova TN, Khachane AN, Martins Dos Santos VA, Yakimov MM, Timmis KN, Golyshin PN., Chem Biol 12(8), 2005
PMID: 16125101

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