Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition

Vorhölter F-J, Thias T, Meyer F, Bekel T, Kaiser O, Pühler A, Niehaus K (2003)
Journal of Biotechnology 106(2-3): 193-202.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Autor
; ; ; ; ; ;
Abstract / Bemerkung
For the Xanthomonas campestris pathovar campestris wild-type strain B 100 a plasmid-based clone library was constructed. The plasmids carried chromosomal fragments of 3-4 kb in size that were tagged in vitro with the artificial transposon KAN-2. More than 3000 of the transposon target sites were characterized by DNA sequencing. The sequences obtained were compared to the recently published genome of Xanthomonas campestris pathovar campestris strain ATCC 33913. Most of the sequenced clones derived from strain B 100 matched the chromosomal sequence of strain ATCC 33913. An alignment to the circular map of this chromosome revealed that the similarities were statistically distributed over the entire genome of strain ATCC 33913. The similarity was obvious for protein coding sequences, as well as for mobile genetic elements. However, four regions in the genome of Xanthomonas campestris pathovar campestris strain ATCC 33913, ranging in size from 11 to 37 kb, were not represented in the sequenced clone library of Xanthomonas campestris pathovar campestris strain B100. On the other hand, 1.2% of the sequenced clones originating from Xanthomonas campestris pathovar campestris strain B 100 showed no or insignificant similarities to the genome of strain ATCC 33913. (C) 2003 Published by Elsevier B.V.
Erscheinungsjahr
Zeitschriftentitel
Journal of Biotechnology
Band
106
Zeitschriftennummer
2-3
Seite
193-202
ISSN
PUB-ID

Zitieren

Vorhölter F-J, Thias T, Meyer F, et al. Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition. Journal of Biotechnology. 2003;106(2-3):193-202.
Vorhölter, F. - J., Thias, T., Meyer, F., Bekel, T., Kaiser, O., Pühler, A., & Niehaus, K. (2003). Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition. Journal of Biotechnology, 106(2-3), 193-202. doi:10.1016/j.jbiotec.2003.08.011
Vorhölter, F. - J., Thias, T., Meyer, F., Bekel, T., Kaiser, O., Pühler, A., and Niehaus, K. (2003). Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition. Journal of Biotechnology 106, 193-202.
Vorhölter, F.-J., et al., 2003. Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition. Journal of Biotechnology, 106(2-3), p 193-202.
F.-J. Vorhölter, et al., “Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition”, Journal of Biotechnology, vol. 106, 2003, pp. 193-202.
Vorhölter, F.-J., Thias, T., Meyer, F., Bekel, T., Kaiser, O., Pühler, A., Niehaus, K.: Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition. Journal of Biotechnology. 106, 193-202 (2003).
Vorhölter, Frank-Jörg, Thias, T., Meyer, F., Bekel, T., Kaiser, O., Pühler, Alfred, and Niehaus, Karsten. “Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition”. Journal of Biotechnology 106.2-3 (2003): 193-202.

14 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Differential accumulation of Xanthomonas campestris pv. campestris proteins during the interaction with the host plant: Contributions of an in vivo system.
Santos C, Maximiano MR, Ribeiro DG, Oliveira-Neto OB, Murad AM, Franco OL, Mehta A., Proteomics 17(12), 2017
PMID: 28471538
Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.
Alkhateeb RS, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter FJ., J Biotechnol 253(), 2017
PMID: 28506932
Systems and synthetic biology perspective of the versatile plant-pathogenic and polysaccharide-producing bacterium Xanthomonas campestris.
Schatschneider S, Schneider J, Blom J, Létisse F, Niehaus K, Goesmann A, Vorhölter FJ., Microbiology 163(8), 2017
PMID: 28795660
Validation of an in vitro system for studies of pathogenicity mechanisms in Xanthomonas campestris.
Maximiano MR, Oliveira-Neto OB, Franco OL, Mehta A., FEMS Microbiol Lett 364(22), 2017
PMID: 29040467
A genomic survey of Reb homologs suggests widespread occurrence of R-bodies in proteobacteria.
Raymann K, Bobay LM, Doak TG, Lynch M, Gribaldo S., G3 (Bethesda) 3(3), 2013
PMID: 23450193
The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection.
Wichmann F, Vorhölter FJ, Hersemann L, Widmer F, Blom J, Niehaus K, Reinhard S, Conradin C, Kölliker R., Mol Plant Pathol 14(6), 2013
PMID: 23578314
Dynamic protein phosphorylation during the growth of Xanthomonas campestris pv. campestris B100 revealed by a gel-based proteomics approach.
Musa YR, Bäsell K, Schatschneider S, Vorhölter FJ, Becher D, Niehaus K., J Biotechnol 167(2), 2013
PMID: 23792782
Detection and functional characterization of a 215 amino acid N-terminal extension in the Xanthomonas type III effector XopD.
Canonne J, Marino D, Noël LD, Arechaga I, Pichereaux C, Rossignol M, Roby D, Rivas S., PLoS One 5(12), 2010
PMID: 21203472
The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
Vorhölter FJ, Schneiker S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Rückert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Pühler A., J Biotechnol 134(1-2), 2008
PMID: 18304669
Profiling the secretomes of plant pathogenic Proteobacteria.
Preston GM, Studholme DJ, Caldelari I., FEMS Microbiol Rev 29(2), 2005
PMID: 15808747
Bacterial phytopathogens and genome science.
Setubal JC, Moreira LM, da Silva AC., Curr Opin Microbiol 8(5), 2005
PMID: 16125997

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 14651861
PubMed | Europe PMC

Suchen in

Google Scholar