CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli

Baumbach J, Wittkop T, Rademacher K, Rahmann S, Brinkrolf K, Tauch A (2007)
JOURNAL OF BIOTECHNOLOGY 129(2): 279-289.

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Konferenzbeitrag | Veröffentlicht | Englisch
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129
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2
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279-289
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Baumbach J, Wittkop T, Rademacher K, Rahmann S, Brinkrolf K, Tauch A. CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli. JOURNAL OF BIOTECHNOLOGY. 2007;129(2):279-289.
Baumbach, J., Wittkop, T., Rademacher, K., Rahmann, S., Brinkrolf, K., & Tauch, A. (2007). CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli. JOURNAL OF BIOTECHNOLOGY, 129(2), 279-289. doi:10.1016/j.jbiotec.2006.12.012
Baumbach, J., Wittkop, T., Rademacher, K., Rahmann, S., Brinkrolf, K., and Tauch, A. (2007). CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli. JOURNAL OF BIOTECHNOLOGY 129, 279-289.
Baumbach, J., et al., 2007. CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli. JOURNAL OF BIOTECHNOLOGY, 129(2), p 279-289.
J. Baumbach, et al., “CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli”, JOURNAL OF BIOTECHNOLOGY, vol. 129, 2007, pp. 279-289.
Baumbach, J., Wittkop, T., Rademacher, K., Rahmann, S., Brinkrolf, K., Tauch, A.: CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli. JOURNAL OF BIOTECHNOLOGY. 129, 279-289 (2007).
Baumbach, Jan, Wittkop, Tobias, Rademacher, Katrin, Rahmann, Sven, Brinkrolf, Karina, and Tauch, Andreas. “CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli”. JOURNAL OF BIOTECHNOLOGY 129.2 (2007): 279-289.

20 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Regulons of global transcription factors in Corynebacterium glutamicum.
Toyoda K, Inui M., Appl Microbiol Biotechnol 100(1), 2016
PMID: 26496920
Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks.
Thébault P, Bourqui R, Benchimol W, Gaspin C, Sirand-Pugnet P, Uricaru R, Dutour I., Brief Bioinform 16(5), 2015
PMID: 25477348
CMRegNet-An interspecies reference database for corynebacterial and mycobacterial regulatory networks.
Abreu VA, Almeida S, Tiwari S, Hassan SS, Mariano D, Silva A, Baumbach J, Azevedo V, Röttger R., BMC Genomics 16(), 2015
PMID: 26062809
CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands.
Pauling J, Röttger R, Tauch A, Azevedo V, Baumbach J., Nucleic Acids Res 40(database issue), 2012
PMID: 22080556
Prokaryotic genome regulation: a revolutionary paradigm.
Ishihama A., Proc Jpn Acad Ser B Phys Biol Sci 88(9), 2012
PMID: 23138451
Regulation of ldh expression during biotin-limited growth of Corynebacterium glutamicum.
Dietrich C, Nato A, Bost B, Le Maréchal P, Guyonvarch A., Microbiology 155(pt 4), 2009
PMID: 19332837
Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays.
Jochmann N, Kurze AK, Czaja LF, Brinkrolf K, Brune I, Hüser AT, Hansmeier N, Pühler A, Borovok I, Tauch A., Microbiology 155(pt 5), 2009
PMID: 19372162
Linking Cytoscape and the corynebacterial reference database CoryneRegNet.
Baumbach J, Apeltsin L., BMC Genomics 9(), 2008
PMID: 18426593
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing.
Wittkop T, Baumbach J, Lobo FP, Rahmann S., BMC Bioinformatics 8(), 2007
PMID: 17941985
CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A., BMC Syst Biol 1(), 2007
PMID: 18034885

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