Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing

Kroeber M, Bekel T, Diaz NN, Goesmann A, Jaenicke S, Krause L, Miller D, Runte KJ, Viehoever P, Pühler A, Schlueter A (2009)
JOURNAL OF BIOTECHNOLOGY 142(1): 38-49.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Autor
; ; ; ; ; ; ; ; ; ;
Abstract / Bemerkung
The phylogenetic structure of the microbial community residing in a fermentation sample from a production-scale biogas plant fed with maize silage. green rye and liquid manure was analysed by an integrated approach using clone library sequences and metagenome sequence data obtained by 454-pyrosequencing. Sequencing of 109 clones from a bacterial and an archaeal 165-rDNA amplicon library revealed that the obtained nucleotide sequences are similar but not identical to 165-rDNA database sequences derived from different anaerobic environments including digestors and bioreactors. Most of the bacterial 165-rDNA sequences could be assigned to the phylum Firmicutes with the most abundant class Clostridia and to the class Bacteroidetes, whereas most archaeal 165-rDNA sequences cluster close to the methanogen Methanoculleus bourgensis. Further sequences of the archaeal library most probably represent so far non-characterised species within the genus Methanoculleus. A similar result derived from phylogenetic analysis of mcrA clone sequences. The mcrA gene product encodes the a-subunit of methyl-coenzyme-M reductase involved in the final step of methanogenesis. BLASTn analysis applying stringent settings resulted in assignment of 165-rDNA metagenome sequence reads to 62 165-rDNA amplicon sequences thus enabling frequency of abundance estimations for 165-rDNA clone library sequences. Ribosomal Database Project (RDP) Classifier processing of metagenome 165-rDNA reads revealed abundance of the phyla Firmicutes, Bacteroidetes and Euryarchaeota and the orders Clostridiales, Bacteroidales and Methanomicrobiales. Moreover, a large fraction of 165-rDNA metagenome reads could not be assigned to lower taxonomic ranks, demonstrating that numerous microorganisms in the analysed fermentation sample of the biogas plant are still unclassified or unknown. (C) 2009 Elsevier B.V. All rights reserved.
Erscheinungsjahr
Zeitschriftentitel
JOURNAL OF BIOTECHNOLOGY
Band
142
Ausgabe
1
Seite(n)
38-49
ISSN
PUB-ID

Zitieren

Kroeber M, Bekel T, Diaz NN, et al. Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. JOURNAL OF BIOTECHNOLOGY. 2009;142(1):38-49.
Kroeber, M., Bekel, T., Diaz, N. N., Goesmann, A., Jaenicke, S., Krause, L., Miller, D., et al. (2009). Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. JOURNAL OF BIOTECHNOLOGY, 142(1), 38-49. doi:10.1016/j.jbiotec.2009.02.010
Kroeber, M., Bekel, T., Diaz, N. N., Goesmann, A., Jaenicke, S., Krause, L., Miller, D., Runte, K. J., Viehoever, P., Pühler, A., et al. (2009). Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. JOURNAL OF BIOTECHNOLOGY 142, 38-49.
Kroeber, M., et al., 2009. Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. JOURNAL OF BIOTECHNOLOGY, 142(1), p 38-49.
M. Kroeber, et al., “Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing”, JOURNAL OF BIOTECHNOLOGY, vol. 142, 2009, pp. 38-49.
Kroeber, M., Bekel, T., Diaz, N.N., Goesmann, A., Jaenicke, S., Krause, L., Miller, D., Runte, K.J., Viehoever, P., Pühler, A., Schlueter, A.: Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. JOURNAL OF BIOTECHNOLOGY. 142, 38-49 (2009).
Kroeber, Magdalena, Bekel, Thomas, Diaz, Naryttza N., Goesmann, Alexander, Jaenicke, Sebastian, Krause, Lutz, Miller, Dimitri, Runte, Kai J., Viehoever, Prisca, Pühler, Alfred, and Schlueter, Andreas. “Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing”. JOURNAL OF BIOTECHNOLOGY 142.1 (2009): 38-49.

104 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Long-term investigation of microbial community composition and transcription patterns in a biogas plant undergoing ammonia crisis.
Fischer MA, Güllert S, Refai S, Künzel S, Deppenmeier U, Streit WR, Schmitz RA., Microb Biotechnol 12(2), 2019
PMID: 30381904
Microbiome dynamics and adaptation of expression signatures during methane production failure and process recovery.
Grohmann A, Fehrmann S, Vainshtein Y, Haag NL, Wiese F, Stevens P, Naegele HJ, Oechsner H, Hartsch T, Sohn K, Grumaz C., Bioresour Technol 247(), 2018
PMID: 28954247
Bulk soil and maize rhizosphere resistance genes, mobile genetic elements and microbial communities are differently impacted by organic and inorganic fertilization.
Wolters B, Jacquiod S, Sørensen SJ, Widyasari-Mehta A, Bech TB, Kreuzig R, Smalla K., FEMS Microbiol Ecol 94(4), 2018
PMID: 29462310
The dynamic changes and interactional networks of prokaryotic community between co-digestion and mono-digestions of corn stalk and pig manure.
Wang M, Zhang X, Zhou J, Yuan Y, Dai Y, Li D, Li Z, Liu X, Yan Z., Bioresour Technol 225(), 2017
PMID: 27875765
Characterization of microbial compositions in a thermophilic chemostat of mixed culture fermentation.
Zhang F, Yang JH, Dai K, Chen Y, Li QR, Gao FM, Zeng RJ., Appl Microbiol Biotechnol 100(3), 2016
PMID: 26563549
Hydrolysis of synthetic polyesters by Clostridium botulinum esterases.
Perz V, Baumschlager A, Bleymaier K, Zitzenbacher S, Hromic A, Steinkellner G, Pairitsch A, Łyskowski A, Gruber K, Sinkel C, Küper U, Ribitsch D, Guebitz GM., Biotechnol Bioeng 113(5), 2016
PMID: 26524601
Microbial community structural analysis of an expanded granular sludge bed (EGSB) reactor for beet sugar industrial wastewater (BSIW) treatment.
Ambuchi JJ, Liu J, Wang H, Shan L, Zhou X, Mohammed MO, Feng Y., Appl Microbiol Biotechnol 100(10), 2016
PMID: 26795960
Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy.
Campanaro S, Treu L, Kougias PG, De Francisci D, Valle G, Angelidaki I., Biotechnol Biofuels 9(), 2016
PMID: 26839589
Spatiotemporal dynamics of bacterial and archaeal communities in household biogas digesters from tropical and subtropical regions of Yunnan Province, China.
Tian G, Li Q, Dong M, Wu Y, Yang B, Zhang L, Li Y, Yin F, Zhao X, Wang Y, Xiao W, Cui X, Zhang W., Environ Sci Pollut Res Int 23(11), 2016
PMID: 26916266
Degradation of oxytetracycline and its impacts on biogas-producing microbial community structure.
Coban H, Ertekin E, Ince O, Turker G, Akyol Ç, Ince B., Bioprocess Biosyst Eng 39(7), 2016
PMID: 26974525
Assessment of hydrogen metabolism in commercial anaerobic digesters.
Kern T, Theiss J, Röske K, Rother M., Appl Microbiol Biotechnol 100(10), 2016
PMID: 26995607
Microorganism-regulated mechanisms of temperature effects on the performance of anaerobic digestion.
Lin Q, He G, Rui J, Fang X, Tao Y, Li J, Li X., Microb Cell Fact 15(), 2016
PMID: 27260194
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant.
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum SP, Jaenicke S, Fracowiak J, Pühler A, Schlüter A., J Biotechnol 231(), 2016
PMID: 27312700
Efficiency and biotechnological aspects of biogas production from microalgal substrates.
Klassen V, Blifernez-Klassen O, Wobbe L, Schlüter A, Kruse O, Mussgnug JH., J Biotechnol 234(), 2016
PMID: 27449486
Herbinix luporum sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor.
Koeck DE, Hahnke S, Zverlov VV, Zverlov VV., Int J Syst Evol Microbiol 66(10), 2016
PMID: 27453473
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants.
Stolze Y, Bremges A, Rumming M, Henke C, Maus I, Pühler A, Sczyrba A, Schlüter A., Biotechnol Biofuels 9(), 2016
PMID: 27462367
Comparative Analysis of Methanogenic Communities in Different Laboratory-Scale Anaerobic Digesters.
Ziganshin AM, Ziganshina EE, Kleinsteuber S, Nikolausz M., Archaea 2016(), 2016
PMID: 28074084
Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample.
Stöveken J, Singh R, Kolkenbrock S, Zakrzewski M, Wibberg D, Eikmeyer FG, Pühler A, Schlüter A, Moerschbacher BM., J Biotechnol 201(), 2015
PMID: 25240439
Inoculum selection is crucial to ensure operational stability in anaerobic digestion.
De Vrieze J, Gildemyn S, Vilchez-Vargas R, Jáuregui R, Pieper DH, Verstraete W, Boon N., Appl Microbiol Biotechnol 99(1), 2015
PMID: 25261127
Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor.
Hahnke S, Maus I, Wibberg D, Tomazetto G, Pühler A, Klocke M, Schlüter A., J Biotechnol 193(), 2015
PMID: 25444871
Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants.
Maus I, Wibberg D, Stantscheff R, Stolze Y, Blom J, Eikmeyer FG, Fracowiak J, König H, Pühler A, Schlüter A., J Biotechnol 201(), 2015
PMID: 25455016
Clostridium cluster I and their pathogenic members in a full-scale operating biogas plant.
Dohrmann AB, Walz M, Löwen A, Tebbe CC., Appl Microbiol Biotechnol 99(8), 2015
PMID: 25472441
Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions.
Stolze Y, Zakrzewski M, Maus I, Eikmeyer F, Jaenicke S, Rottmann N, Siebner C, Pühler A, Schlüter A., Biotechnol Biofuels 8(), 2015
PMID: 25688290
Ammonia and temperature determine potential clustering in the anaerobic digestion microbiome.
De Vrieze J, Saunders AM, He Y, Fang J, Nielsen PH, Verstraete W, Boon N., Water Res 75(), 2015
PMID: 25819618
Mesophilic versus thermophilic anaerobic digestion of cattle manure: methane productivity and microbial ecology.
Moset V, Poulsen M, Wahid R, Højberg O, Møller HB., Microb Biotechnol 8(5), 2015
PMID: 25737010
The Quantification of Representative Sequences pipeline for amplicon sequencing: case study on within-population ITS1 sequence variation in a microparasite infecting Daphnia.
González-Tortuero E, Rusek J, Petrusek A, Gießler S, Lyras D, Grath S, Castro-Monzón F, Wolinska J., Mol Ecol Resour 15(6), 2015
PMID: 25728529
Archaeal community diversity in municipal waste landfill sites.
Song L, Wang Y, Tang W, Lei Y., Appl Microbiol Biotechnol 99(14), 2015
PMID: 25758957
Exploitation of algal-bacterial associations in a two-stage biohydrogen and biogas generation process.
Wirth R, Lakatos G, Maróti G, Bagi Z, Minárovics J, Nagy K, Kondorosi É, Rákhely G, Kovács KL., Biotechnol Biofuels 8(), 2015
PMID: 25873997
Effect of the Organic Loading Rate Increase and the Presence of Zeolite on Microbial Community Composition and Process Stability During Anaerobic Digestion of Chicken Wastes.
Ziganshina EE, Belostotskiy DE, Ilinskaya ON, Boulygina EA, Grigoryeva TV, Ziganshin AM., Microb Ecol 70(4), 2015
PMID: 26045158
Design and application of a synthetic DNA standard for real-time PCR analysis of microbial communities in a biogas digester.
May T, Koch-Singenstreu M, Ebling J, Stantscheff R, Müller L, Jacobi F, Polag D, Keppler F, König H., Appl Microbiol Biotechnol 99(16), 2015
PMID: 26092754
Pyrosequencing Reveals a Core Community of Anodic Bacterial Biofilms in Bioelectrochemical Systems from China.
Xiao Y, Zheng Y, Wu S, Zhang EH, Chen Z, Liang P, Huang X, Yang ZH, Ng IS, Chen BY, Zhao F., Front Microbiol 6(), 2015
PMID: 26733958
Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads.
Nolla-Ardèvol V, Peces M, Strous M, Tegetmeyer HE., BMC Microbiol 15(), 2015
PMID: 26680455
Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity.
Lü F, Bize A, Guillot A, Monnet V, Madigou C, Chapleur O, Mazéas L, He P, Bouchez T., ISME J 8(1), 2014
PMID: 23949661
Microbial community structure of a pilot-scale thermophilic anaerobic digester treating poultry litter.
Smith AM, Sharma D, Lappin-Scott H, Burton S, Huber DH., Appl Microbiol Biotechnol 98(5), 2014
PMID: 23989973
Isolation and differentiation of methanogenic Archaea from mesophilic corn-fed on-farm biogas plants with special emphasis on the genus Methanobacterium.
Stantscheff R, Kuever J, Rabenstein A, Seyfarth K, Dröge S, König H., Appl Microbiol Biotechnol 98(12), 2014
PMID: 24639207
Absolute quantification of individual biomass concentrations in a methanogenic coculture.
Junicke H, Abbas B, Oentoro J, van Loosdrecht M, Kleerebezem R., AMB Express 4(), 2014
PMID: 24949269
Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor.
Hahnke S, Striesow J, Elvert M, Mollar XP, Klocke M., Int J Syst Evol Microbiol 64(pt 8), 2014
PMID: 24860110
Monitoring of thermophilic adaptation of mesophilic anaerobe fermentation of sugar beet pressed pulp.
Tukacs-Hájos A, Pap B, Maróti G, Szendefy J, Szabó P, Rétfalvi T., Bioresour Technol 166(), 2014
PMID: 24926601
Application of Anaerobic Digestion Model No. 1 to describe the syntrophic acetate oxidation of poultry litter in thermophilic anaerobic digestion.
Rivera-Salvador V, López-Cruz IL, Espinosa-Solares T, Aranda-Barradas JS, Huber DH, Sharma D, Toledo JU., Bioresour Technol 167(), 2014
PMID: 25011081
Microbial community composition and dynamics in high-temperature biogas reactors using industrial bioethanol waste as substrate.
Röske I, Sabra W, Nacke H, Daniel R, Zeng AP, Antranikian G, Sahm K., Appl Microbiol Biotechnol 98(21), 2014
PMID: 25012784
Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments.
Hurt RA, Robeson MS, Shakya M, Moberly JG, Vishnivetskaya TA, Gu B, Elias DA., PLoS One 9(7), 2014
PMID: 25033199
A metagenomic study of the microbial communities in four parallel biogas reactors.
Solli L, Håvelsrud OE, Horn SJ, Rike AG., Biotechnol Biofuels 7(1), 2014
PMID: 25328537
MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A., J Biotechnol 167(2), 2013
PMID: 23026555
Stability of a biogas-producing bacterial, archaeal and fungal community degrading food residues.
Bengelsdorf FR, Gerischer U, Langer S, Zak M, Kazda M., FEMS Microbiol Ecol 84(1), 2013
PMID: 23228065
A pyrosequencing-based metagenomic study of methane-producing microbial community in solid-state biogas reactor.
Li A, Chu Y, Wang X, Ren L, Yu J, Liu X, Yan J, Zhang L, Wu S, Li S., Biotechnol Biofuels 6(1), 2013
PMID: 23320936
Towards a metagenomic understanding on enhanced biomethane production from waste activated sludge after pH 10 pretreatment.
Wong MT, Zhang D, Li J, Hui RK, Tun HM, Brar MS, Park TJ, Chen Y, Leung FC., Biotechnol Biofuels 6(1), 2013
PMID: 23506434
Microbial community structure and dynamics during anaerobic digestion of various agricultural waste materials.
Ziganshin AM, Liebetrau J, Pröter J, Kleinsteuber S., Appl Microbiol Biotechnol 97(11), 2013
PMID: 23624683
Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation.
Hanreich A, Schimpf U, Zakrzewski M, Schlüter A, Benndorf D, Heyer R, Rapp E, Pühler A, Reichl U, Klocke M., Syst Appl Microbiol 36(5), 2013
PMID: 23694815
Molecular characterization of bacterial and archaeal communities in a full-scale anaerobic reactor treating corn straw.
Qiao JT, Qiu YL, Yuan XZ, Shi XS, Xu XH, Guo RB., Bioresour Technol 143(), 2013
PMID: 23827442
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Zverlov VV, Pühler A, Schwarz WH, Schlüter A., J Biotechnol 168(1), 2013
PMID: 23968723
Microbial anaerobic digestion (bio-digesters) as an approach to the decontamination of animal wastes in pollution control and the generation of renewable energy.
Manyi-Loh CE, Mamphweli SN, Meyer EL, Okoh AI, Makaka G, Simon M., Int J Environ Res Public Health 10(9), 2013
PMID: 24048207
Metagenomic profiling of antibiotic resistance genes and mobile genetic elements in a tannery wastewater treatment plant.
Wang Z, Zhang XX, Huang K, Miao Y, Shi P, Liu B, Long C, Li A., PLoS One 8(10), 2013
PMID: 24098424
Improved picoliter-sized micro-reactors for high-throughput biological analysis.
Han W, Yuan L, Wei Q, Li Y, Ren L, Zhou X, Yu J, Yu Y., Sci China Life Sci 56(12), 2013
PMID: 24302294
Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing.
Rademacher A, Zakrzewski M, Schlüter A, Schönberg M, Szczepanowski R, Goesmann A, Pühler A, Klocke M., FEMS Microbiol Ecol 79(3), 2012
PMID: 22126587
Methanoculleus spp. as a biomarker of methanogenic activity in swine manure storage tanks.
Barret M, Gagnon N, Morissette B, Topp E, Kalmokoff M, Brooks SP, Matias F, Massé DI, Masse L, Talbot G., FEMS Microbiol Ecol 80(2), 2012
PMID: 22268671
Monitoring bacterial community structure and variability in time scale in full-scale anaerobic digesters.
Lee SH, Kang HJ, Lee YH, Lee TJ, Han K, Choi Y, Park HD., J Environ Monit 14(7), 2012
PMID: 22426622
The effect of maize silage as co-substrate for swine manure on the bacterial community structure in biogas plants.
Fliegerová K, Mrázek J, Kajan M, Podmirseg SM, Insam H., Folia Microbiol (Praha) 57(4), 2012
PMID: 22491986
Characterization of a Methanogenic Community within an Algal Fed Anaerobic Digester.
Ellis JT, Tramp C, Sims RC, Miller CD., ISRN Microbiol 2012(), 2012
PMID: 23724331
The effect of temperature on the structure and function of a cellulose-degrading microbial community.
Lü Y, Li N, Gong D, Wang X, Cui Z., Appl Biochem Biotechnol 168(2), 2012
PMID: 22782641
Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing.
Wirth R, Kovács E, Maróti G, Bagi Z, Rákhely G, Kovács KL., Biotechnol Biofuels 5(), 2012
PMID: 22673110
DGGE analysis of buffalo manure eubacteria for hydrogen production: effect of pH, temperature and pretreatments.
Carillo P, Carotenuto C, Di Cristofaro F, Kafantaris I, Lubritto C, Minale M, Morrone B, Papa S, Woodrow P., Mol Biol Rep 39(12), 2012
PMID: 23014994
Comparative metagenomic analysis of soil microbial communities across three hexachlorocyclohexane contamination levels.
Sangwan N, Lata P, Dwivedi V, Singh A, Niharika N, Kaur J, Anand S, Malhotra J, Jindal S, Nigam A, Lal D, Dua A, Saxena A, Garg N, Verma M, Kaur J, Mukherjee U, Gilbert JA, Dowd SE, Raman R, Khurana P, Khurana JP, Lal R., PLoS One 7(9), 2012
PMID: 23029440
Complete genome sequence of the hydrogenotrophic, methanogenic archaeon Methanoculleus bourgensis strain MS2(T), Isolated from a sewage sludge digester.
Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, Schlüter A., J Bacteriol 194(19), 2012
PMID: 22965103
Methanogenic Community Dynamics during Anaerobic Utilization of Agricultural Wastes.
Ziganshin AM, Ziganshina EE, Kleinsteuber S, Pröter J, Ilinskaya ON., Acta Naturae 4(4), 2012
PMID: 23346384
Ecogenomics of microbial communities in bioremediation of chlorinated contaminated sites.
Maphosa F, Lieten SH, Dinkla I, Stams AJ, Smidt H, Fennell DE., Front Microbiol 3(), 2012
PMID: 23060869
Methane production by treating vinasses from hydrous ethanol using a modified UASB reactor.
España-Gamboa EI, Mijangos-Cortés JO, Hernández-Zárate G, Maldonado JA, Alzate-Gaviria LM., Biotechnol Biofuels 5(1), 2012
PMID: 23167984
A meta-analysis of the microbial diversity observed in anaerobic digesters.
Nelson MC, Morrison M, Yu Z., Bioresour Technol 102(4), 2011
PMID: 21194932
Metagenomic analyses: past and future trends.
Simon C, Daniel R., Appl Environ Microbiol 77(4), 2011
PMID: 21169428
Investigation of mircroorganisms colonising activated zeolites during anaerobic biogas production from grass silage.
Weiss S, Zankel A, Lebuhn M, Petrak S, Somitsch W, Guebitz GM., Bioresour Technol 102(6), 2011
PMID: 21277767
Microbial community composition and dynamics in a semi-industrial-scale facility operating under the MixAlco™ bioconversion platform.
Hollister EB, Hammett AM, Holtzapple MT, Gentry TJ, Wilkinson HH., J Appl Microbiol 110(2), 2011
PMID: 21199196
Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing.
Jaenicke S, Ander C, Bekel T, Bisdorf R, Dröge M, Gartemann KH, Jünemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, Pühler A, Schlüter A, Goesmann A., PLoS One 6(1), 2011
PMID: 21297863
Bacteria and archaea involved in anaerobic digestion of distillers grains with solubles.
Ziganshin AM, Schmidt T, Scholwin F, Il'inskaya ON, Harms H, Kleinsteuber S., Appl Microbiol Biotechnol 89(6), 2011
PMID: 21061007
A diverse bacterial community in an anoxic quinoline-degrading bioreactor determined by using pyrosequencing and clone library analysis.
Zhang X, Yue S, Zhong H, Hua W, Chen R, Cao Y, Zhao L., Appl Microbiol Biotechnol 91(2), 2011
PMID: 21538111
Taxonomic classification of metagenomic shotgun sequences with CARMA3.
Gerlach W, Stoye J., Nucleic Acids Res 39(14), 2011
PMID: 21586583
Cultivation-independent methods applied to the microbial prospection of oil and gas in soil from a sedimentary basin in Brazil.
Miqueletto PB, Andreote FD, Dias AC, Ferreira JC, Dos Santos Neto EV, de Oliveira VM., AMB Express 1(), 2011
PMID: 22018208
Lung infections in cystic fibrosis: deriving clinical insight from microbial complexity.
Rogers GB, Stressmann FA, Walker AW, Carroll MP, Bruce KD., Expert Rev Mol Diagn 10(2), 2010
PMID: 20214537
Impact of trace element addition on biogas production from food industrial waste--linking process to microbial communities.
Feng XM, Karlsson A, Svensson BH, Bertilsson S., FEMS Microbiol Ecol 74(1), 2010
PMID: 20633047
Design and development of the ANAEROCHIP microarray for investigation of methanogenic communities.
Franke-Whittle IH, Goberna M, Pfister V, Insam H., J Microbiol Methods 79(3), 2009
PMID: 19799937

50 References

Daten bereitgestellt von Europe PubMed Central.

Applications of the anaerobic digestion process.
Angelidaki I, Ellegaard L, Ahring BK., Adv. Biochem. Eng. Biotechnol. 82(), 2003
PMID: 12747564
The potential of cellulases and cellulosomes for cellulosic waste management.
Bayer EA, Lamed R, Himmel ME., Curr. Opin. Biotechnol. 18(3), 2007
PMID: 17462879
Cellulosomes-structure and ultrastructure.
Bayer EA, Shimon LJ, Shoham Y, Lamed R., J. Struct. Biol. 124(2-3), 1998
PMID: 10049808
Cellulose, cellulases and cellulosomes.
Bayer EA, Chanzy H, Lamed R, Shoham Y., Curr. Opin. Struct. Biol. 8(5), 1998
PMID: 9818257
The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides.
Bayer EA, Belaich JP, Shoham Y, Lamed R., Annu. Rev. Microbiol. 58(), 2004
PMID: 15487947
16S rDNA characterisation of bacterial and archaeal communities during start-up of anaerobic thermophilic digestion of cattle manure.
Chachkhiani M, Dabert P, Abzianidze T, Partskhaladze G, Tsiklauri L, Dudauri T, Godon JJ., Bioresour. Technol. 93(3), 2004
PMID: 15062816
Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester.
Chouari R, Le Paslier D, Daegelen P, Ginestet P, Weissenbach J, Sghir A., Environ. Microbiol. 7(8), 2005
PMID: 16011748
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data.
Cole JR, Chai B, Farris RJ, Wang Q, Kulam-Syed-Mohideen AS, McGarrell DM, Bandela AM, Cardenas E, Garrity GM, Tiedje JM., Nucleic Acids Res. 35(Database issue), 2006
PMID: 17090583
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
Cole, Nucleic Acids Res. (), 2008
Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma.
Elshahed MS, Youssef NH, Luo Q, Najar FZ, Roe BA, Sisk TM, Buhring SI, Hinrichs KU, Krumholz LR., Appl. Environ. Microbiol. 73(15), 2007
PMID: 17545322
Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill.
Huang LN, Chen YQ, Zhou H, Luo S, Lan CY, Qu LH., FEMS Microbiol. Ecol. 46(2), 2003
PMID: 19719570
Detection of methanogenic Archaea in peat: comparison of PCR primers targeting the mcrA gene.
Juottonen H, Galand PE, Yrjala K., Res. Microbiol. 157(10), 2006
PMID: 17070673
Mixed culture biotechnology for bioenergy production.
Kleerebezem R, van Loosdrecht MC., Curr. Opin. Biotechnol. 18(3), 2007
PMID: 17509864
Characterization of the methanogenic Archaea within two-phase biogas reactor systems operated with plant biomass.
Klocke M, Nettmann E, Bergmann I, Mundt K, Souidi K, Mumme J, Linke B., Syst. Appl. Microbiol. 31(3), 2008
PMID: 18501543
Phylogenetic classification of short environmental DNA fragments.
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J., Nucleic Acids Res. 36(7), 2008
PMID: 18285365
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor.
Krause L, Diaz NN, Edwards RA, Gartemann KH, Kromeke H, Neuweger H, Puhler A, Runte KJ, Schluter A, Stoye J, Szczepanowski R, Tauch A, Goesmann A., J. Biotechnol. 136(1-2), 2008
PMID: 18611419
Characterization of a psychrotrophic Clostridium causing spoilage in vacuum-packed cooked pork: description of Clostridium algidicarnis sp. nov.
Lawson P, Dainty RH, Kristiansen N, Berg J, Collins MD., Lett. Appl. Microbiol. 19(3), 1994
PMID: 7522471
Evolution of mammals and their gut microbes.
Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS, Schlegel ML, Tucker TA, Schrenzel MD, Knight R, Gordon JI., Science 320(5883), 2008
PMID: 18497261
The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill.
Luton PE, Wayne JM, Sharp RJ, Riley PW., Microbiology (Reading, Engl.) 148(Pt 11), 2002
PMID: 12427943
Effect of bowel preparation and colonoscopy on post-procedure intestinal microbiota composition.
Mai V, Greenwald B, Morris JG Jr, Raufman JP, Stine OC., Gut 55(12), 2006
PMID: 17124165
A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library.
Manichanh C, Chapple CE, Frangeul L, Gloux K, Guigo R, Dore J., Nucleic Acids Res. 36(16), 2008
PMID: 18682527
Methanogenic population structure in a variety of anaerobic bioreactors.
McHugh S, Carton M, Mahony T, O'Flaherty V., FEMS Microbiol. Lett. 219(2), 2003
PMID: 12620635
Anaerobic bacterial degradation for the effective utilization of biomass
Ohmiya, Biotechnol. Bioprocess. Eng. 10(), 2005
"Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division.
Pelletier E, Kreimeyer A, Bocs S, Rouy Z, Gyapay G, Chouari R, Riviere D, Ganesan A, Daegelen P, Sghir A, Cohen GN, Medigue C, Weissenbach J, Le Paslier D., J. Bacteriol. 190(7), 2008
PMID: 18245282
Investigation of methanogen population structure in biogas reactor by molecular characterization of methyl-coenzyme M reductase A (mcrA) genes
Rastogi, Bioresour. Technol. (), 2007
Microbial population in the biomass adhering to supporting material in a packed-bed reactor degrading organic solid waste.
Sasaki K, Haruta S, Ueno Y, Ishii M, Igarashi Y., Appl. Microbiol. Biotechnol. 75(4), 2007
PMID: 17334757
IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes.
Schluter A, Krahn I, Kollin F, Bonemann G, Stiens M, Szczepanowski R, Schneiker S, Puhler A., Appl. Environ. Microbiol. 73(20), 2007
PMID: 17675426
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
Schluter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann KH, Krahn I, Krause L, Kromeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Puhler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehover P, Goesmann A., J. Biotechnol. 136(1-2), 2008
PMID: 18597880
Microbial community of a mesophilic propionate-degrading methanogenic consortium in chemostat cultivation analyzed based on 16S rRNA and acetate kinase genes.
Shigematsu T, Era S, Mizuno Y, Ninomiya K, Kamegawa Y, Morimura S, Kida K., Appl. Microbiol. Biotechnol. 72(2), 2006
PMID: 16496142
Molecular characterization of microbial communities in fault-bordered aquifers in the Miocene formation of northernmost Japan
Shimizu, Geobiology 4(), 2006
Isolation and characterization of a new Clostridium sp. that performs effective cellulosic waste digestion in a thermophilic methanogenic bioreactor.
Shiratori H, Ikeno H, Ayame S, Kataoka N, Miya A, Hosono K, Beppu T, Ueda K., Appl. Environ. Microbiol. 72(5), 2006
PMID: 16672520
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
Wang Q, Garrity GM, Tiedje JM, Cole JR., Appl. Environ. Microbiol. 73(16), 2007
PMID: 17586664
Production and energetic use of biogas from energy crops and wastes in Germany.
Weiland P., Appl. Biochem. Biotechnol. 109(1-3), 2003
PMID: 12794299
Diversity of the resident microbiota in a thermophilic municipal biogas plant.
Weiss A, Jerome V, Freitag R, Mayer HK., Appl. Microbiol. Biotechnol. 81(1), 2008
PMID: 18820906
Metagenomics: read length matters.
Wommack KE, Bhavsar J, Ravel J., Appl. Environ. Microbiol. 74(5), 2008
PMID: 18192407
Enhancement of biogas production from solid substrates using different techniques--a review.
Yadvika , Santosh , Sreekrishnan TR, Kohli S, Rana V., Bioresour. Technol. 95(1), 2004
PMID: 15207286

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 19480946
PubMed | Europe PMC

Suchen in

Google Scholar