An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris

Wenke T, Holtgräwe D, Horn AV, Weisshaar B, Schmidt T (2009)
Plant Molecular Biology 71(6): 585-597.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
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Abstract / Bemerkung
We describe a non-LTR retrotransposon family,BvL, of the long interspersed nuclear elements L1 clade isolated from sugar beet (Beta vulgaris). Characteristic molecular domains of three full-length BvL elements were determined in detail, showing that coding sequences are interrupted and most likely non-functionally. In addition,eight highly conserved endonuclease regions were defined by comparison with other plant LINEs. The abundant BvL family is widespread within the genus Beta, however, the vast majority of BvL copies are extremely 50 truncated indicating an error-prone reverse transcriptase activity. The dispersed distribution of BvL copies on all sugar beet chromosomes with exclusion of most heterochromatic regions was shown by fluorescent in situ hybridization. The analysis of BvL 30 end sequences and corresponding flanking regions, respectively, revealed the preferred integration of BvL into A/T-rich regions of the sugar beet genome, but no specific target sequences.
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Zeitschriftentitel
Plant Molecular Biology
Band
71
Zeitschriftennummer
6
Seite
585-597
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Wenke T, Holtgräwe D, Horn AV, Weisshaar B, Schmidt T. An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology. 2009;71(6):585-597.
Wenke, T., Holtgräwe, D., Horn, A. V., Weisshaar, B., & Schmidt, T. (2009). An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology, 71(6), 585-597. doi:10.1007/s11103-009-9542-6
Wenke, T., Holtgräwe, D., Horn, A. V., Weisshaar, B., and Schmidt, T. (2009). An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology 71, 585-597.
Wenke, T., et al., 2009. An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology, 71(6), p 585-597.
T. Wenke, et al., “An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris”, Plant Molecular Biology, vol. 71, 2009, pp. 585-597.
Wenke, T., Holtgräwe, D., Horn, A.V., Weisshaar, B., Schmidt, T.: An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology. 71, 585-597 (2009).
Wenke, Torsten, Holtgräwe, Daniela, Horn, Axel V., Weisshaar, Bernd, and Schmidt, Thomas. “An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris”. Plant Molecular Biology 71.6 (2009): 585-597.

12 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

DNA methylation of retrotransposons, DNA transposons and genes in sugar beet (Beta vulgaris L.).
Zakrzewski F, Schmidt M, Van Lijsebettens M, Schmidt T., Plant J 90(6), 2017
PMID: 28257158
Convergence of retrotransposons in oomycetes and plants.
Ustyantsev K, Blinov A, Smyshlyaev G., Mob DNA 8(), 2017
PMID: 28293305
Identification and characterization of mobile genetic elements LINEs from Brassica genome.
Nouroz F, Noreen S, Khan MF, Ahmed S, Heslop-Harrison JSP., Gene 627(), 2017
PMID: 28606835
Diversification, evolution and methylation of short interspersed nuclear element families in sugar beet and related Amaranthaceae species.
Schwichtenberg K, Wenke T, Zakrzewski F, Seibt KM, Minoche A, Dohm JC, Weisshaar B, Himmelbauer H, Schmidt T., Plant J 85(2), 2016
PMID: 26676716
Characterization of new transposable element sub-families from white clover (Trifolium repens) using PCR amplification.
Becker KE, Thomas MC, Martini S, Shuipys T, Didorchuk V, Shanker RM, Laten HM., Genetica 144(5), 2016
PMID: 27671023
Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.
Heitkam T, Holtgräwe D, Dohm JC, Minoche AE, Himmelbauer H, Weisshaar B, Schmidt T., Plant J 79(3), 2014
PMID: 24862340
Retrotransposon replication in plants.
Schulman AH., Curr Opin Virol 3(6), 2013
PMID: 24035277
Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome.
Wollrab C, Heitkam T, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Plant J 72(4), 2012
PMID: 22804913
Epigenetic profiling of heterochromatic satellite DNA.
Zakrzewski F, Weisshaar B, Fuchs J, Bannack E, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Chromosoma 120(4), 2011
PMID: 21594600
Analysis of a c0t-1 library enables the targeted identification of minisatellite and satellite families in Beta vulgaris.
Zakrzewski F, Wenke T, Holtgräwe D, Weisshaar B, Schmidt T., BMC Plant Biol 10(), 2010
PMID: 20064260

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