An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris

Wenke T, Holtgräwe D, Horn AV, Weisshaar B, Schmidt T (2009)
Plant Molecular Biology 71(6): 585-597.

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Abstract
We describe a non-LTR retrotransposon family,BvL, of the long interspersed nuclear elements L1 clade isolated from sugar beet (Beta vulgaris). Characteristic molecular domains of three full-length BvL elements were determined in detail, showing that coding sequences are interrupted and most likely non-functionally. In addition,eight highly conserved endonuclease regions were defined by comparison with other plant LINEs. The abundant BvL family is widespread within the genus Beta, however, the vast majority of BvL copies are extremely 50 truncated indicating an error-prone reverse transcriptase activity. The dispersed distribution of BvL copies on all sugar beet chromosomes with exclusion of most heterochromatic regions was shown by fluorescent in situ hybridization. The analysis of BvL 30 end sequences and corresponding flanking regions, respectively, revealed the preferred integration of BvL into A/T-rich regions of the sugar beet genome, but no specific target sequences.
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Wenke T, Holtgräwe D, Horn AV, Weisshaar B, Schmidt T. An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology. 2009;71(6):585-597.
Wenke, T., Holtgräwe, D., Horn, A. V., Weisshaar, B., & Schmidt, T. (2009). An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology, 71(6), 585-597.
Wenke, T., Holtgräwe, D., Horn, A. V., Weisshaar, B., and Schmidt, T. (2009). An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology 71, 585-597.
Wenke, T., et al., 2009. An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology, 71(6), p 585-597.
T. Wenke, et al., “An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris”, Plant Molecular Biology, vol. 71, 2009, pp. 585-597.
Wenke, T., Holtgräwe, D., Horn, A.V., Weisshaar, B., Schmidt, T.: An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology. 71, 585-597 (2009).
Wenke, Torsten, Holtgräwe, Daniela, Horn, Axel V., Weisshaar, Bernd, and Schmidt, Thomas. “An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris”. Plant Molecular Biology 71.6 (2009): 585-597.
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6 Citations in Europe PMC

Data provided by Europe PubMed Central.

Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.
Heitkam T, Holtgrawe D, Dohm JC, Minoche AE, Himmelbauer H, Weisshaar B, Schmidt T., Plant J. 79(3), 2014
PMID: 24862340
Retrotransposon replication in plants.
Schulman AH., Curr Opin Virol 3(6), 2013
PMID: 24035277
Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome.
Wollrab C, Heitkam T, Holtgrawe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Plant J. 72(4), 2012
PMID: 22804913
Epigenetic profiling of heterochromatic satellite DNA.
Zakrzewski F, Weisshaar B, Fuchs J, Bannack E, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Chromosoma 120(4), 2011
PMID: 21594600
Analysis of a c0t-1 library enables the targeted identification of minisatellite and satellite families in Beta vulgaris.
Zakrzewski F, Wenke T, Holtgrawe D, Weisshaar B, Schmidt T., BMC Plant Biol. 10(), 2010
PMID: 20064260

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