Markus Nebel
PEVZ-ID
54 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956771Müller, Robert, and Nebel, Markus. “On the use of sequence-quality information in OTU clustering”. PeerJ 9 (2021): e11717.PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Datenpublikation | PUB-ID: 2951742Müller, Robert, and Nebel, Markus. Evaluation data for "On the use of sequence-quality information in OTU clustering". Bielefeld University, 2021.PUB | Dateien verfügbar | DOI
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2018 | Datenpublikation | PUB-ID: 2918928Müller, Robert, and Nebel, Markus. Evaluation data for "GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach". Bielefeld University, 2018.PUB | Dateien verfügbar | DOI
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2015 | Zeitschriftenaufsatz | PUB-ID: 2909997Müller, Robert, and Nebel, Markus. “Combinatorics of RNA Secondary Structures with Base Triples”. Journal of Computational Biology 22.7 (2015): 619--648.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Konferenzbeitrag | PUB-ID: 2909999Martinez, Conrado, Nebel, Markus, and Wild, Sebastian. “Analysis of Branch Misses in Quicksort”. Proceedings of the Twelfth Workshop on Analytic Algorithmics and Combinatorics, ANALCO 2015, San Diego, CA, USA, January 4, 2015. Society for Industrial and Applied Mathematics, 2015. 114--128.PUB | DOI | arXiv
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910050Codish, Michael, Cruz-Filipe, Luis, Nebel, Markus, and Schneider-Kamp, Peter. “Applying Sorting Networks to Synthesize Optimized Sorting Libraries”. Logic-Based Program Synthesis and Transformation - 25th International Symposium, LOPSTR 2015, Siena, Italy, July 13-15, 2015. Revised Selected Papers. Ed. Moreno Falaschi. Berlin ; Heidelberg: Springer, 2015.Vol. 9527. Lecture Notes in Computer Science. 127-142.PUB | DOI | arXiv
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910000Nebel, Markus, and Wild, Sebastian. “Pivot Sampling in Java 7's Dual-Pivot Quicksort: Exploiting Asymmetries in Yaroslavskiy’s Partitioning Scheme”. Proceedings of the 25th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms. Ed. Mireille Bousquet-Mélou and Michèle Soria. 2014. DMTCS-HAL Proceedings Series. 325-338.PUB | arXiv
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2013 | Konferenzbeitrag | PUB-ID: 2910003Wild, Sebastian, Nebel, Markus, Reitzig, Raphael, and Laube, Ulrich. “Engineering Java 7's Dual Pivot Quicksort Using MaLiJan”. Proceedings of the 15th Meeting on Algorithm Engineering and Experiments, ALENEX 2013, New Orleans, Louisiana, USA, January 7, 2013. Philadelphia, PA: Society for Industrial and Applied Mathematics, 2013. 55--69.PUB | DOI
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910010Scheid, Anika, and Nebel, Markus. “Evaluating the Effect of Disturbed Ensemble Distributions on SCFG Based Statistical Sampling of RNA Secondary Structures”. BMC Bioinformatics 13.1 (2012): 159.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910009M. Reidys, Christian, W. D. Huang, Fenix, E. Andersen, Jorgen, C. Penner, Robert, F. Stadler, Peter, and Nebel, Markus. “Addendum: topology and prediction of RNA pseudoknots”. Bioinformatics 28.2 (2012): 300.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910012Nebel, Markus, and Weinberg, Frank. “Algebraic and Combinatorial Properties of Common RNA Pseudoknot Classes with Applications”. Journal of Computational Biology 19.10 (2012): 1134--1150.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Konferenzbeitrag | PUB-ID: 2910014Nebel, Markus, and Scheid, Anika. “A n^2 RNA Secondary Structure Prediction Algorithm”. BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1 - 4 February, 2012. 2012. 66--75.PUB
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910011Yu Jin, Emma, and Nebel, Markus. “A Combinatorial Proof of the Recurrence for Rook Paths”. Electr. J. Comb. 19.1 (2012): P57.PUB
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910013Yu Jin, Emma, and Nebel, Markus. “The Expected Order of Saturated RNA Secondary Structures”. 2012 Proceedings of the Ninth Workshop on Analytic Algorithmics and Combinatorics (ANALCO). Ed. Hsien-Kuei Hwang and Conrado Martínez. SIAM, 2012. 84-91.PUB | DOI
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910015Wild, Sebastian, and Nebel, Markus. “Average Case Analysis of Java 7's Dual Pivot Quicksort”. Algorithms - ESA 2012. 20th Annual European Symposium, Ljubljana, Slovenia, September 10-12, 2012. Proceedings. Ed. Leah Epstein and Paolo Ferragina. Berlin ; Heidelberg: Springer, 2012.Vol. 7501. Lecture Notes in Computer Science. 825-836.PUB | DOI | arXiv
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910017Nebel, Markus, Scheid, Anika, and Weinberg, Frank. “Random generation of RNA secondary structures according to native distributions”. Algorithms for Molecular Biology 6.1 (2011): 24.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910021Nebel, Markus, and Scheid, Anika. “Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model”. IEEE/ACM Trans. Comput. Biology Bioinform. 8.6 (2011): 1468--1482.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910022Nebel, Markus, and Scheid, Anika. “Evaluation of a sophisticated SCFG design for RNA secondary structure prediction”. Theory in Biosciences 130.4 (2011): 313--336.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910018M. Reidys, Christian, W. D. Huang, Fenix, E. Andersen, Jorgen, C. Penner, Robert, F. Stadler, Peter, and Nebel, Markus. “Topology and prediction of RNA pseudoknots”. Bioinformatics 27.8 (2011): 1076--1085.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910019Nebel, Markus, Wild, Sebastian, Holzhauser, Michael, Hüttenberger, Lars, Reitzig, Raphael, Sperber, Matthias, and Stoeck, Thorsten. “Jaguc - a Software package for Environmental Diversity Analyses”. J. Bioinformatics and Computational Biology 9.6 (2011): 749--773.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910020Nebel, Markus, M. Reidys, Christian, and R. Wang, Rita. “Loops in Canonical RNA Pseudoknot Structures”. Journal of Computational Biology 18.12 (2011): 1793--1806.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Konferenzbeitrag | PUB-ID: 2910023Afzal Uzmi, Zartash, Nebel, Markus, Tariq, Ahsan, Jawad, Sana, Chen, Ruichuan, Shaikh, Aman, Wang, Jia, and Francis, Paul. “SMALTA: practical and near-optimal FIB aggregation”. Proceedings of the 2011 Conference on Emerging Networking Experiments and Technologies, Co-NEXT '11, Tokyo, Japan, December 6-9, 2011. Ed. Association for Computing Machinery. New York, NY: ACM Press, 2011. ACM Digital Library. 29.PUB | DOI
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2010 | Konferenzbeitrag | PUB-ID: 2910027Weinberg, Frank, and Nebel, Markus. “Extending Stochastic Context-Free Grammars for an Application in Bioinformatics”. Language and Automata Theory and Applications, 4th International Conference, LATA 2010, Trier, Germany, May 24-28, 2010. Proceedings. Berlin, Heidelberg: Springer Berlin Heidelberg, 2010. 585--595.PUB | DOI
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2009 | Zeitschriftenaufsatz | PUB-ID: 2910028Nebel, Markus, and Scheid, Anika. “On quantitative effects of RNA shape abstraction”. Theory in Biosciences 128.4 (2009): 211--225.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Konferenzbeitrag | PUB-ID: 2910032Nebel, Markus. “Compact Descriptions for Efficient Algorithms”. 9th International Workshop on Descriptional Complexity of Formal Systems - DCFS 2007, High Tatras, Slovakia, July 20 - 22, 2007. 2007. 27--40.PUB
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2004 | Konferenzbeitrag | PUB-ID: 2910036Nebel, Markus. “Identifying Good Predictions of RNA Secondary Structure”. Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004. 2004. 423--434.PUB
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2003 | Zeitschriftenaufsatz | PUB-ID: 2910037Nebel, Markus. “Combinatorial Properties of RNA Secondary Structures”. Journal of Computational Biology 9.3 (2003): 541--573.PUB | DOI | WoS | PubMed | Europe PMC
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2002 | Zeitschriftenaufsatz | PUB-ID: 2910038Nebel, Markus. “The Stack-Size of Combinatorial Tries Revisited”. Discrete Mathematics & Theoretical Computer Science 5.1 (2002): 1--16.PUB
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2001 | Zeitschriftenaufsatz | PUB-ID: 2910042Nebel, Markus. “On the Power of Subroutines for Finite State Machines”. Journal of Automata, Languages and Combinatorics 6.1 (2001): 51--74.PUB
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1997 | Zeitschriftenaufsatz | PUB-ID: 2910045Nebel, Markus. “New Results on the Stack Ramification of Binary Trees”. Journal of Automata, Languages and Combinatorics 2.3 (1997): 161--176.PUB
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1997 | Konferenzbeitrag | PUB-ID: 2910046Nebel, Markus. “On the Average Complexity of the Membership Problem for a Generalized Dyck Language”. Fundamentals of Computation Theory, 11th International Symposium, FCT '97, Krakow, Poland, September 1-3, 1997, Proceedings. Berlin, Heidelberg: Springer Berlin Heidelberg, 1997. 352--363.PUB | DOI
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1996 | Zeitschriftenaufsatz | PUB-ID: 2910047Nebel, Markus. “Digital Search Trees with Keys of Variable Length”. ITA 30.6 (1996): 507--520.PUB