Markus Nebel
PEVZ-ID
54 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956771Müller R, Nebel M (2021)PUB | DOI | WoS | PubMed | Europe PMC
On the use of sequence-quality information in OTU clustering.
PeerJ 9: e11717. -
2021 | Datenpublikation | PUB-ID: 2951742Müller R, Nebel M (2021)PUB | Dateien verfügbar | DOI
Evaluation data for "On the use of sequence-quality information in OTU clustering".
Bielefeld University. -
2018 | Datenpublikation | PUB-ID: 2918928Müller R, Nebel M (2018)PUB | Dateien verfügbar | DOI
Evaluation data for "GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach".
Bielefeld University. -
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2015 | Zeitschriftenaufsatz | PUB-ID: 2909997Müller R, Nebel M (2015)PUB | DOI | WoS | PubMed | Europe PMC
Combinatorics of RNA Secondary Structures with Base Triples.
Journal of Computational Biology 22(7): 619--648. -
2015 | Konferenzbeitrag | PUB-ID: 2909999Martinez C, Nebel M, Wild S (2015)PUB | DOI | arXiv
Analysis of Branch Misses in Quicksort.
In: Proceedings of the Twelfth Workshop on Analytic Algorithmics and Combinatorics, ANALCO 2015, San Diego, CA, USA, January 4, 2015. Society for Industrial and Applied Mathematics: 114--128. -
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910050Codish M, Cruz-Filipe L, Nebel M, Schneider-Kamp P (2015)PUB | DOI | arXiv
Applying Sorting Networks to Synthesize Optimized Sorting Libraries.
In: Logic-Based Program Synthesis and Transformation - 25th International Symposium, LOPSTR 2015, Siena, Italy, July 13-15, 2015. Revised Selected Papers. Falaschi M (Ed); Lecture Notes in Computer Science, 9527. Berlin ; Heidelberg: Springer: 127-142. -
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910000Nebel M, Wild S (2014)PUB | arXiv
Pivot Sampling in Java 7's Dual-Pivot Quicksort: Exploiting Asymmetries in Yaroslavskiy’s Partitioning Scheme.
In: Proceedings of the 25th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms. Bousquet-Mélou M, Soria M (Eds); DMTCS-HAL Proceedings Series, 325-338. -
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2013 | Konferenzbeitrag | PUB-ID: 2910003Wild S, Nebel M, Reitzig R, Laube U (2013)PUB | DOI
Engineering Java 7's Dual Pivot Quicksort Using MaLiJan.
In: Proceedings of the 15th Meeting on Algorithm Engineering and Experiments, ALENEX 2013, New Orleans, Louisiana, USA, January 7, 2013. Philadelphia, PA: Society for Industrial and Applied Mathematics: 55--69. -
2012 | Zeitschriftenaufsatz | PUB-ID: 2910010Scheid A, Nebel M (2012)PUB | DOI | WoS | PubMed | Europe PMC
Evaluating the Effect of Disturbed Ensemble Distributions on SCFG Based Statistical Sampling of RNA Secondary Structures.
BMC Bioinformatics 13(1): 159. -
2012 | Zeitschriftenaufsatz | PUB-ID: 2910009M. Reidys C, W. D. Huang F, E. Andersen J, C. Penner R, F. Stadler P, Nebel M (2012)PUB | DOI | WoS | PubMed | Europe PMC
Addendum: topology and prediction of RNA pseudoknots.
Bioinformatics 28(2): 300. -
2012 | Zeitschriftenaufsatz | PUB-ID: 2910012Nebel M, Weinberg F (2012)PUB | DOI | WoS | PubMed | Europe PMC
Algebraic and Combinatorial Properties of Common RNA Pseudoknot Classes with Applications.
Journal of Computational Biology 19(10): 1134--1150. -
2012 | Konferenzbeitrag | PUB-ID: 2910014Nebel M, Scheid A (2012)PUB
A n^2 RNA Secondary Structure Prediction Algorithm.
In: BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1 - 4 February, 2012. 66--75. -
2012 | Zeitschriftenaufsatz | PUB-ID: 2910011Yu Jin E, Nebel M (2012)PUB
A Combinatorial Proof of the Recurrence for Rook Paths.
Electr. J. Comb. 19(1): P57. -
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910015Wild S, Nebel M (2012)PUB | DOI | arXiv
Average Case Analysis of Java 7's Dual Pivot Quicksort.
In: Algorithms - ESA 2012. 20th Annual European Symposium, Ljubljana, Slovenia, September 10-12, 2012. Proceedings. Epstein L, Ferragina P (Eds); Lecture Notes in Computer Science, 7501. Berlin ; Heidelberg: Springer: 825-836. -
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910017Nebel M, Scheid A, Weinberg F (2011)PUB | DOI | WoS | PubMed | Europe PMC
Random generation of RNA secondary structures according to native distributions.
Algorithms for Molecular Biology 6(1): 24. -
2011 | Zeitschriftenaufsatz | PUB-ID: 2910021Nebel M, Scheid A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model.
IEEE/ACM Trans. Comput. Biology Bioinform. 8(6): 1468--1482. -
2011 | Zeitschriftenaufsatz | PUB-ID: 2910022Nebel M, Scheid A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Evaluation of a sophisticated SCFG design for RNA secondary structure prediction.
Theory in Biosciences 130(4): 313--336. -
2011 | Zeitschriftenaufsatz | PUB-ID: 2910018M. Reidys C, W. D. Huang F, E. Andersen J, C. Penner R, F. Stadler P, Nebel M (2011)PUB | DOI | WoS | PubMed | Europe PMC
Topology and prediction of RNA pseudoknots.
Bioinformatics 27(8): 1076--1085. -
2011 | Zeitschriftenaufsatz | PUB-ID: 2910019Nebel M, Wild S, Holzhauser M, Hüttenberger L, Reitzig R, Sperber M, Stoeck T (2011)PUB | DOI | WoS | PubMed | Europe PMC
Jaguc - a Software package for Environmental Diversity Analyses.
J. Bioinformatics and Computational Biology 9(6): 749--773. -
2011 | Zeitschriftenaufsatz | PUB-ID: 2910020Nebel M, M. Reidys C, R. Wang R (2011)PUB | DOI | WoS | PubMed | Europe PMC
Loops in Canonical RNA Pseudoknot Structures.
Journal of Computational Biology 18(12): 1793--1806. -
2011 | Konferenzbeitrag | PUB-ID: 2910023Afzal Uzmi Z, Nebel M, Tariq A, Jawad S, Chen R, Shaikh A, Wang J, Francis P (2011)PUB | DOI
SMALTA: practical and near-optimal FIB aggregation.
In: Proceedings of the 2011 Conference on Emerging Networking Experiments and Technologies, Co-NEXT '11, Tokyo, Japan, December 6-9, 2011. Association for Computing Machinery (Ed); ACM Digital Library, New York, NY: ACM Press: 29. -
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2010 | Konferenzbeitrag | PUB-ID: 2910027Weinberg F, Nebel M (2010)PUB | DOI
Extending Stochastic Context-Free Grammars for an Application in Bioinformatics.
In: Language and Automata Theory and Applications, 4th International Conference, LATA 2010, Trier, Germany, May 24-28, 2010. Proceedings. Berlin, Heidelberg: Springer Berlin Heidelberg: 585--595. -
2009 | Zeitschriftenaufsatz | PUB-ID: 2910028Nebel M, Scheid A (2009)PUB | DOI | WoS | PubMed | Europe PMC
On quantitative effects of RNA shape abstraction.
Theory in Biosciences 128(4): 211--225. -
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2007 | Konferenzbeitrag | PUB-ID: 2910032Nebel M (2007)PUB
Compact Descriptions for Efficient Algorithms.
In: 9th International Workshop on Descriptional Complexity of Formal Systems - DCFS 2007, High Tatras, Slovakia, July 20 - 22, 2007. 27--40. -
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2004 | Konferenzbeitrag | PUB-ID: 2910036Nebel M (2004)PUB
Identifying Good Predictions of RNA Secondary Structure.
In: Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004. 423--434. -
2003 | Zeitschriftenaufsatz | PUB-ID: 2910037Nebel M (2003)PUB | DOI | WoS | PubMed | Europe PMC
Combinatorial Properties of RNA Secondary Structures.
Journal of Computational Biology 9(3): 541--573. -
2002 | Zeitschriftenaufsatz | PUB-ID: 2910038Nebel M (2002)PUB
The Stack-Size of Combinatorial Tries Revisited.
Discrete Mathematics & Theoretical Computer Science 5(1): 1--16. -
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2001 | Zeitschriftenaufsatz | PUB-ID: 2910042Nebel M (2001)PUB
On the Power of Subroutines for Finite State Machines.
Journal of Automata, Languages and Combinatorics 6(1): 51--74. -
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1997 | Zeitschriftenaufsatz | PUB-ID: 2910045Nebel M (1997)PUB
New Results on the Stack Ramification of Binary Trees.
Journal of Automata, Languages and Combinatorics 2(3): 161--176. -
1997 | Konferenzbeitrag | PUB-ID: 2910046Nebel M (1997)PUB | DOI
On the Average Complexity of the Membership Problem for a Generalized Dyck Language.
In: Fundamentals of Computation Theory, 11th International Symposium, FCT '97, Krakow, Poland, September 1-3, 1997, Proceedings. Berlin, Heidelberg: Springer Berlin Heidelberg: 352--363. -
1996 | Zeitschriftenaufsatz | PUB-ID: 2910047Nebel M (1996)PUB
Digital Search Trees with Keys of Variable Length.
ITA 30(6): 507--520.