Markus Nebel
PEVZ-ID
54 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956771Müller R, Nebel M. On the use of sequence-quality information in OTU clustering. PeerJ. 2021;9: e11717.PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Datenpublikation | PUB-ID: 2951742Müller R, Nebel M. Evaluation data for "On the use of sequence-quality information in OTU clustering". Bielefeld University; 2021.PUB | Dateien verfügbar | DOI
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2018 | Datenpublikation | PUB-ID: 2918928Müller R, Nebel M. Evaluation data for "GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach". Bielefeld University; 2018.PUB | Dateien verfügbar | DOI
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2015 | Zeitschriftenaufsatz | PUB-ID: 2909997Müller R, Nebel M. Combinatorics of RNA Secondary Structures with Base Triples. Journal of Computational Biology. 2015;22(7):619--648.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Konferenzbeitrag | PUB-ID: 2909999Martinez C, Nebel M, Wild S. Analysis of Branch Misses in Quicksort. In: Proceedings of the Twelfth Workshop on Analytic Algorithmics and Combinatorics, ANALCO 2015, San Diego, CA, USA, January 4, 2015. Society for Industrial and Applied Mathematics; 2015: 114--128.PUB | DOI | arXiv
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910050Codish M, Cruz-Filipe L, Nebel M, Schneider-Kamp P. Applying Sorting Networks to Synthesize Optimized Sorting Libraries. In: Falaschi M, ed. Logic-Based Program Synthesis and Transformation - 25th International Symposium, LOPSTR 2015, Siena, Italy, July 13-15, 2015. Revised Selected Papers. Lecture Notes in Computer Science. Vol 9527. Berlin ; Heidelberg: Springer; 2015: 127-142.PUB | DOI | arXiv
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910000Nebel M, Wild S. Pivot Sampling in Java 7's Dual-Pivot Quicksort: Exploiting Asymmetries in Yaroslavskiy’s Partitioning Scheme. In: Bousquet-Mélou M, Soria M, eds. Proceedings of the 25th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms. DMTCS-HAL Proceedings Series. 2014: 325-338.PUB | arXiv
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2013 | Konferenzbeitrag | PUB-ID: 2910003Wild S, Nebel M, Reitzig R, Laube U. Engineering Java 7's Dual Pivot Quicksort Using MaLiJan. In: Proceedings of the 15th Meeting on Algorithm Engineering and Experiments, ALENEX 2013, New Orleans, Louisiana, USA, January 7, 2013. Philadelphia, PA: Society for Industrial and Applied Mathematics; 2013: 55--69.PUB | DOI
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910010Scheid A, Nebel M. Evaluating the Effect of Disturbed Ensemble Distributions on SCFG Based Statistical Sampling of RNA Secondary Structures. BMC Bioinformatics. 2012;13(1): 159.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910009M. Reidys C, W. D. Huang F, E. Andersen J, C. Penner R, F. Stadler P, Nebel M. Addendum: topology and prediction of RNA pseudoknots. Bioinformatics. 2012;28(2):300.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910012Nebel M, Weinberg F. Algebraic and Combinatorial Properties of Common RNA Pseudoknot Classes with Applications. Journal of Computational Biology. 2012;19(10):1134--1150.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Konferenzbeitrag | PUB-ID: 2910014Nebel M, Scheid A. A n^2 RNA Secondary Structure Prediction Algorithm. In: BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1 - 4 February, 2012. 2012: 66--75.PUB
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910011Yu Jin E, Nebel M. A Combinatorial Proof of the Recurrence for Rook Paths. Electr. J. Comb. 2012;19(1):P57.PUB
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910015Wild S, Nebel M. Average Case Analysis of Java 7's Dual Pivot Quicksort. In: Epstein L, Ferragina P, eds. Algorithms - ESA 2012. 20th Annual European Symposium, Ljubljana, Slovenia, September 10-12, 2012. Proceedings. Lecture Notes in Computer Science. Vol 7501. Berlin ; Heidelberg: Springer; 2012: 825-836.PUB | DOI | arXiv
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910017Nebel M, Scheid A, Weinberg F. Random generation of RNA secondary structures according to native distributions. Algorithms for Molecular Biology. 2011;6(1): 24.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910021Nebel M, Scheid A. Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model. IEEE/ACM Trans. Comput. Biology Bioinform. 2011;8(6):1468--1482.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910022Nebel M, Scheid A. Evaluation of a sophisticated SCFG design for RNA secondary structure prediction. Theory in Biosciences. 2011;130(4):313--336.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910018M. Reidys C, W. D. Huang F, E. Andersen J, C. Penner R, F. Stadler P, Nebel M. Topology and prediction of RNA pseudoknots. Bioinformatics. 2011;27(8):1076--1085.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910019Nebel M, Wild S, Holzhauser M, et al. Jaguc - a Software package for Environmental Diversity Analyses. J. Bioinformatics and Computational Biology. 2011;9(6):749--773.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910020Nebel M, M. Reidys C, R. Wang R. Loops in Canonical RNA Pseudoknot Structures. Journal of Computational Biology. 2011;18(12):1793--1806.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Konferenzbeitrag | PUB-ID: 2910023Afzal Uzmi Z, Nebel M, Tariq A, et al. SMALTA: practical and near-optimal FIB aggregation. In: Association for Computing Machinery, ed. Proceedings of the 2011 Conference on Emerging Networking Experiments and Technologies, Co-NEXT '11, Tokyo, Japan, December 6-9, 2011. ACM Digital Library. New York, NY: ACM Press; 2011: 29.PUB | DOI
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2010 | Konferenzbeitrag | PUB-ID: 2910027Weinberg F, Nebel M. Extending Stochastic Context-Free Grammars for an Application in Bioinformatics. In: Language and Automata Theory and Applications, 4th International Conference, LATA 2010, Trier, Germany, May 24-28, 2010. Proceedings. Berlin, Heidelberg: Springer Berlin Heidelberg; 2010: 585--595.PUB | DOI
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2009 | Zeitschriftenaufsatz | PUB-ID: 2910028Nebel M, Scheid A. On quantitative effects of RNA shape abstraction. Theory in Biosciences. 2009;128(4):211--225.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Konferenzbeitrag | PUB-ID: 2910032Nebel M. Compact Descriptions for Efficient Algorithms. In: 9th International Workshop on Descriptional Complexity of Formal Systems - DCFS 2007, High Tatras, Slovakia, July 20 - 22, 2007. 2007: 27--40.PUB
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2004 | Konferenzbeitrag | PUB-ID: 2910036Nebel M. Identifying Good Predictions of RNA Secondary Structure. In: Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004. 2004: 423--434.PUB
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2003 | Zeitschriftenaufsatz | PUB-ID: 2910037Nebel M. Combinatorial Properties of RNA Secondary Structures. Journal of Computational Biology. 2003;9(3):541--573.PUB | DOI | WoS | PubMed | Europe PMC
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2002 | Zeitschriftenaufsatz | PUB-ID: 2910038Nebel M. The Stack-Size of Combinatorial Tries Revisited. Discrete Mathematics & Theoretical Computer Science. 2002;5(1):1--16.PUB
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2001 | Zeitschriftenaufsatz | PUB-ID: 2910042Nebel M. On the Power of Subroutines for Finite State Machines. Journal of Automata, Languages and Combinatorics. 2001;6(1):51--74.PUB
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1997 | Zeitschriftenaufsatz | PUB-ID: 2910045Nebel M. New Results on the Stack Ramification of Binary Trees. Journal of Automata, Languages and Combinatorics. 1997;2(3):161--176.PUB
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1997 | Konferenzbeitrag | PUB-ID: 2910046Nebel M. On the Average Complexity of the Membership Problem for a Generalized Dyck Language. In: Fundamentals of Computation Theory, 11th International Symposium, FCT '97, Krakow, Poland, September 1-3, 1997, Proceedings. Berlin, Heidelberg: Springer Berlin Heidelberg; 1997: 352--363.PUB | DOI
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1996 | Zeitschriftenaufsatz | PUB-ID: 2910047Nebel M. Digital Search Trees with Keys of Variable Length. ITA. 1996;30(6):507--520.PUB