Markus Nebel
PEVZ-ID
54 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956771Müller, R., Nebel, M.: On the use of sequence-quality information in OTU clustering. PeerJ. 9, : e11717 (2021).PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Datenpublikation | PUB-ID: 2951742Müller, R., Nebel, M.: Evaluation data for "On the use of sequence-quality information in OTU clustering". Bielefeld University (2021).PUB | Dateien verfügbar | DOI
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2018 | Datenpublikation | PUB-ID: 2918928Müller, R., Nebel, M.: Evaluation data for "GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach". Bielefeld University (2018).PUB | Dateien verfügbar | DOI
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2015 | Zeitschriftenaufsatz | PUB-ID: 2909997Müller, R., Nebel, M.: Combinatorics of RNA Secondary Structures with Base Triples. Journal of Computational Biology. 22, 619--648 (2015).PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Konferenzbeitrag | PUB-ID: 2909999Martinez, C., Nebel, M., Wild, S.: Analysis of Branch Misses in Quicksort. Proceedings of the Twelfth Workshop on Analytic Algorithmics and Combinatorics, ANALCO 2015, San Diego, CA, USA, January 4, 2015. p. 114--128. Society for Industrial and Applied Mathematics (2015).PUB | DOI | arXiv
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910050Codish, M., Cruz-Filipe, L., Nebel, M., Schneider-Kamp, P.: Applying Sorting Networks to Synthesize Optimized Sorting Libraries. In: Falaschi, M. (ed.) Logic-Based Program Synthesis and Transformation - 25th International Symposium, LOPSTR 2015, Siena, Italy, July 13-15, 2015. Revised Selected Papers. Lecture Notes in Computer Science. 9527, p. 127-142. Springer, Berlin ; Heidelberg (2015).PUB | DOI | arXiv
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910000Nebel, M., Wild, S.: Pivot Sampling in Java 7's Dual-Pivot Quicksort: Exploiting Asymmetries in Yaroslavskiy’s Partitioning Scheme. In: Bousquet-Mélou, M. and Soria, M. (eds.) Proceedings of the 25th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms. DMTCS-HAL Proceedings Series. p. 325-338. (2014).PUB | arXiv
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2013 | Konferenzbeitrag | PUB-ID: 2910003Wild, S., Nebel, M., Reitzig, R., Laube, U.: Engineering Java 7's Dual Pivot Quicksort Using MaLiJan. Proceedings of the 15th Meeting on Algorithm Engineering and Experiments, ALENEX 2013, New Orleans, Louisiana, USA, January 7, 2013. p. 55--69. Society for Industrial and Applied Mathematics, Philadelphia, PA (2013).PUB | DOI
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910010Scheid, A., Nebel, M.: Evaluating the Effect of Disturbed Ensemble Distributions on SCFG Based Statistical Sampling of RNA Secondary Structures. BMC Bioinformatics. 13, : 159 (2012).PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910009M. Reidys, C., W. D. Huang, F., E. Andersen, J., C. Penner, R., F. Stadler, P., Nebel, M.: Addendum: topology and prediction of RNA pseudoknots. Bioinformatics. 28, 300 (2012).PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910012Nebel, M., Weinberg, F.: Algebraic and Combinatorial Properties of Common RNA Pseudoknot Classes with Applications. Journal of Computational Biology. 19, 1134--1150 (2012).PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Konferenzbeitrag | PUB-ID: 2910014Nebel, M., Scheid, A.: A n^2 RNA Secondary Structure Prediction Algorithm. BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1 - 4 February, 2012. p. 66--75. (2012).PUB
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910011Yu Jin, E., Nebel, M.: A Combinatorial Proof of the Recurrence for Rook Paths. Electr. J. Comb. 19, P57 (2012).PUB
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910013Yu Jin, E., Nebel, M.: The Expected Order of Saturated RNA Secondary Structures. In: Hwang, H.-K. and Martínez, C. (eds.) 2012 Proceedings of the Ninth Workshop on Analytic Algorithmics and Combinatorics (ANALCO). p. 84-91. SIAM (2012).PUB | DOI
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910015Wild, S., Nebel, M.: Average Case Analysis of Java 7's Dual Pivot Quicksort. In: Epstein, L. and Ferragina, P. (eds.) Algorithms - ESA 2012. 20th Annual European Symposium, Ljubljana, Slovenia, September 10-12, 2012. Proceedings. Lecture Notes in Computer Science. 7501, p. 825-836. Springer, Berlin ; Heidelberg (2012).PUB | DOI | arXiv
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910017Nebel, M., Scheid, A., Weinberg, F.: Random generation of RNA secondary structures according to native distributions. Algorithms for Molecular Biology. 6, : 24 (2011).PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910021Nebel, M., Scheid, A.: Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model. IEEE/ACM Trans. Comput. Biology Bioinform. 8, 1468--1482 (2011).PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910022Nebel, M., Scheid, A.: Evaluation of a sophisticated SCFG design for RNA secondary structure prediction. Theory in Biosciences. 130, 313--336 (2011).PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910018M. Reidys, C., W. D. Huang, F., E. Andersen, J., C. Penner, R., F. Stadler, P., Nebel, M.: Topology and prediction of RNA pseudoknots. Bioinformatics. 27, 1076--1085 (2011).PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910019Nebel, M., Wild, S., Holzhauser, M., Hüttenberger, L., Reitzig, R., Sperber, M., Stoeck, T.: Jaguc - a Software package for Environmental Diversity Analyses. J. Bioinformatics and Computational Biology. 9, 749--773 (2011).PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910020Nebel, M., M. Reidys, C., R. Wang, R.: Loops in Canonical RNA Pseudoknot Structures. Journal of Computational Biology. 18, 1793--1806 (2011).PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Konferenzbeitrag | PUB-ID: 2910023Afzal Uzmi, Z., Nebel, M., Tariq, A., Jawad, S., Chen, R., Shaikh, A., Wang, J., Francis, P.: SMALTA: practical and near-optimal FIB aggregation. In: Association for Computing Machinery (ed.) Proceedings of the 2011 Conference on Emerging Networking Experiments and Technologies, Co-NEXT '11, Tokyo, Japan, December 6-9, 2011. ACM Digital Library. p. 29. ACM Press, New York, NY (2011).PUB | DOI
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2010 | Konferenzbeitrag | PUB-ID: 2910027Weinberg, F., Nebel, M.: Extending Stochastic Context-Free Grammars for an Application in Bioinformatics. Language and Automata Theory and Applications, 4th International Conference, LATA 2010, Trier, Germany, May 24-28, 2010. Proceedings. p. 585--595. Springer Berlin Heidelberg, Berlin, Heidelberg (2010).PUB | DOI
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2009 | Zeitschriftenaufsatz | PUB-ID: 2910028Nebel, M., Scheid, A.: On quantitative effects of RNA shape abstraction. Theory in Biosciences. 128, 211--225 (2009).PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Konferenzbeitrag | PUB-ID: 2910032Nebel, M.: Compact Descriptions for Efficient Algorithms. 9th International Workshop on Descriptional Complexity of Formal Systems - DCFS 2007, High Tatras, Slovakia, July 20 - 22, 2007. p. 27--40. (2007).PUB
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2004 | Konferenzbeitrag | PUB-ID: 2910036Nebel, M.: Identifying Good Predictions of RNA Secondary Structure. Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004. p. 423--434. (2004).PUB
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2003 | Zeitschriftenaufsatz | PUB-ID: 2910037Nebel, M.: Combinatorial Properties of RNA Secondary Structures. Journal of Computational Biology. 9, 541--573 (2003).PUB | DOI | WoS | PubMed | Europe PMC
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2002 | Zeitschriftenaufsatz | PUB-ID: 2910038Nebel, M.: The Stack-Size of Combinatorial Tries Revisited. Discrete Mathematics & Theoretical Computer Science. 5, 1--16 (2002).PUB
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2001 | Zeitschriftenaufsatz | PUB-ID: 2910042Nebel, M.: On the Power of Subroutines for Finite State Machines. Journal of Automata, Languages and Combinatorics. 6, 51--74 (2001).PUB
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1997 | Zeitschriftenaufsatz | PUB-ID: 2910045Nebel, M.: New Results on the Stack Ramification of Binary Trees. Journal of Automata, Languages and Combinatorics. 2, 161--176 (1997).PUB
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1997 | Konferenzbeitrag | PUB-ID: 2910046Nebel, M.: On the Average Complexity of the Membership Problem for a Generalized Dyck Language. Fundamentals of Computation Theory, 11th International Symposium, FCT '97, Krakow, Poland, September 1-3, 1997, Proceedings. p. 352--363. Springer Berlin Heidelberg, Berlin, Heidelberg (1997).PUB | DOI
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1996 | Zeitschriftenaufsatz | PUB-ID: 2910047Nebel, M.: Digital Search Trees with Keys of Variable Length. ITA. 30, 507--520 (1996).PUB