Markus Nebel
PEVZ-ID
54 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956771R. Müller, and M. Nebel, “On the use of sequence-quality information in OTU clustering”, PeerJ, 2021, 9, : e11717.PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Datenpublikation | PUB-ID: 2951742R. Müller, and M. Nebel, Evaluation data for "On the use of sequence-quality information in OTU clustering", Bielefeld University, 2021.PUB | Dateien verfügbar | DOI
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2018 | Datenpublikation | PUB-ID: 2918928R. Müller, and M. Nebel, Evaluation data for "GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach", Bielefeld University, 2018.PUB | Dateien verfügbar | DOI
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2015 | Zeitschriftenaufsatz | PUB-ID: 2909997R. Müller, and M. Nebel, “Combinatorics of RNA Secondary Structures with Base Triples”, Journal of Computational Biology, 2015, 22, 619--648.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910050M. Codish, L. Cruz-Filipe, M. Nebel, and P. Schneider-Kamp, in Logic-Based Program Synthesis and Transformation - 25th International Symposium, LOPSTR 2015, Siena, Italy, July 13-15, 2015. Revised Selected Papers (Ed.: M. Falaschi), Springer, Berlin ; Heidelberg, 2015, p. 127-142.PUB | DOI | arXiv
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2013 | Konferenzbeitrag | PUB-ID: 2910003S. Wild, M. Nebel, R. Reitzig, and U. Laube, in Proceedings of the 15th Meeting on Algorithm Engineering and Experiments, ALENEX 2013, New Orleans, Louisiana, USA, January 7, 2013, Society For Industrial And Applied Mathematics, Philadelphia, PA, 2013, p. 55--69.PUB | DOI
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910010A. Scheid, and M. Nebel, “Evaluating the Effect of Disturbed Ensemble Distributions on SCFG Based Statistical Sampling of RNA Secondary Structures”, BMC Bioinformatics, 2012, 13, : 159.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910009C. M. Reidys, F. W. D. Huang, J. E. Andersen, R. C. Penner, P. F. Stadler, and M. Nebel, “Addendum: topology and prediction of RNA pseudoknots”, Bioinformatics, 2012, 28, 300.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910012M. Nebel, and F. Weinberg, “Algebraic and Combinatorial Properties of Common RNA Pseudoknot Classes with Applications”, Journal of Computational Biology, 2012, 19, 1134--1150.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Konferenzbeitrag | PUB-ID: 2910014M. Nebel, and A. Scheid, in BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1 - 4 February, 2012., 2012, p. 66--75.PUB
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910011E. Yu Jin, and M. Nebel, “A Combinatorial Proof of the Recurrence for Rook Paths”, Electr. J. Comb., 2012, 19, P57.PUB
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910017M. Nebel, A. Scheid, and F. Weinberg, “Random generation of RNA secondary structures according to native distributions”, Algorithms for Molecular Biology, 2011, 6, : 24.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910021M. Nebel, and A. Scheid, “Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model”, IEEE/ACM Trans. Comput. Biology Bioinform., 2011, 8, 1468--1482.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910022M. Nebel, and A. Scheid, “Evaluation of a sophisticated SCFG design for RNA secondary structure prediction”, Theory in Biosciences, 2011, 130, 313--336.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910018C. M. Reidys, F. W. D. Huang, J. E. Andersen, R. C. Penner, P. F. Stadler, and M. Nebel, “Topology and prediction of RNA pseudoknots”, Bioinformatics, 2011, 27, 1076--1085.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910019M. Nebel, S. Wild, M. Holzhauser, L. Hüttenberger, R. Reitzig, M. Sperber, and T. Stoeck, “Jaguc - a Software package for Environmental Diversity Analyses”, J. Bioinformatics and Computational Biology, 2011, 9, 749--773.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910020M. Nebel, C. M. Reidys, and R. R. Wang, “Loops in Canonical RNA Pseudoknot Structures”, Journal of Computational Biology, 2011, 18, 1793--1806.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Konferenzbeitrag | PUB-ID: 2910023Z. Afzal Uzmi, M. Nebel, A. Tariq, S. Jawad, R. Chen, A. Shaikh, J. Wang, and P. Francis, in Proceedings of the 2011 Conference on Emerging Networking Experiments and Technologies, Co-NEXT '11, Tokyo, Japan, December 6-9, 2011 (Ed.: Association for Computing Machinery), Acm Press, New York, NY, 2011, p. 29.PUB | DOI
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2009 | Zeitschriftenaufsatz | PUB-ID: 2910028M. Nebel, and A. Scheid, “On quantitative effects of RNA shape abstraction”, Theory in Biosciences, 2009, 128, 211--225.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Konferenzbeitrag | PUB-ID: 2910032M. Nebel, in 9th International Workshop on Descriptional Complexity of Formal Systems - DCFS 2007, High Tatras, Slovakia, July 20 - 22, 2007, 2007, p. 27--40.PUB
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2004 | Konferenzbeitrag | PUB-ID: 2910036M. Nebel, in Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004, 2004, p. 423--434.PUB
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2003 | Zeitschriftenaufsatz | PUB-ID: 2910037M. Nebel, “Combinatorial Properties of RNA Secondary Structures”, Journal of Computational Biology, 2003, 9, 541--573.PUB | DOI | WoS | PubMed | Europe PMC
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2002 | Zeitschriftenaufsatz | PUB-ID: 2910038M. Nebel, “The Stack-Size of Combinatorial Tries Revisited”, Discrete Mathematics & Theoretical Computer Science, 2002, 5, 1--16.PUB
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2001 | Zeitschriftenaufsatz | PUB-ID: 2910042M. Nebel, “On the Power of Subroutines for Finite State Machines”, Journal of Automata, Languages and Combinatorics, 2001, 6, 51--74.PUB
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1997 | Zeitschriftenaufsatz | PUB-ID: 2910045M. Nebel, “New Results on the Stack Ramification of Binary Trees”, Journal of Automata, Languages and Combinatorics, 1997, 2, 161--176.PUB
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1996 | Zeitschriftenaufsatz | PUB-ID: 2910047M. Nebel, “Digital Search Trees with Keys of Variable Length”, ITA, 1996, 30, 507--520.PUB