Markus Nebel
PEVZ-ID
54 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956771Müller, R., & Nebel, M. (2021). On the use of sequence-quality information in OTU clustering. PeerJ, 9, e11717. https://doi.org/10.7717/peerj.11717PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Datenpublikation | PUB-ID: 2951742Müller, R., & Nebel, M. (2021). Evaluation data for "On the use of sequence-quality information in OTU clustering". Bielefeld University. https://doi.org/10.4119/unibi/2951742PUB | Dateien verfügbar | DOI
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2018 | Datenpublikation | PUB-ID: 2918928Müller, R., & Nebel, M. (2018). Evaluation data for "GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach". Bielefeld University. https://doi.org/10.4119/unibi/2918928PUB | Dateien verfügbar | DOI
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931048Müller, R., & Nebel, M. (2018). GeFaST: An improved method for OTU assignment by generalising Swarm’s fastidious clustering approach. BMC Bioinformatics, 19(1), 321. doi:10.1186/s12859-018-2349-1PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909993Nebel, M., Wild, S., & Martinez, C. (2016). Analysis of Pivot Sampling in Dual-Pivot Quicksort: A Holistic Analysis of Yaroslavskiy's Partitioning Scheme. Algorithmica, 75(4), 632-683. doi:10.1007/s00453-015-0041-7PUB | DOI | WoS | arXiv
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2015 | Zeitschriftenaufsatz | PUB-ID: 2909997Müller, R., & Nebel, M. (2015). Combinatorics of RNA Secondary Structures with Base Triples. Journal of Computational Biology, 22(7), 619--648. doi:10.1089/cmb.2013.0022PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Konferenzbeitrag | PUB-ID: 2909999Martinez, C., Nebel, M., & Wild, S. (2015). Analysis of Branch Misses in Quicksort. Proceedings of the Twelfth Workshop on Analytic Algorithmics and Combinatorics, ANALCO 2015, San Diego, CA, USA, January 4, 2015, 114--128. Society for Industrial and Applied Mathematics. doi:10.1137/1.9781611973761.11PUB | DOI | arXiv
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910050Codish, M., Cruz-Filipe, L., Nebel, M., & Schneider-Kamp, P. (2015). Applying Sorting Networks to Synthesize Optimized Sorting Libraries. In M. Falaschi (Ed.), Lecture Notes in Computer Science: Vol. 9527. Logic-Based Program Synthesis and Transformation - 25th International Symposium, LOPSTR 2015, Siena, Italy, July 13-15, 2015. Revised Selected Papers (pp. 127-142). Berlin ; Heidelberg: Springer. doi:10.1007/978-3-319-27436-2_8PUB | DOI | arXiv
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910000Nebel, M., & Wild, S. (2014). Pivot Sampling in Java 7's Dual-Pivot Quicksort: Exploiting Asymmetries in Yaroslavskiy’s Partitioning Scheme. In M. Bousquet-Mélou & M. Soria (Eds.), DMTCS-HAL Proceedings Series. Proceedings of the 25th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (pp. 325-338).PUB | arXiv
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2013 | Konferenzbeitrag | PUB-ID: 2910003Wild, S., Nebel, M., Reitzig, R., & Laube, U. (2013). Engineering Java 7's Dual Pivot Quicksort Using MaLiJan. Proceedings of the 15th Meeting on Algorithm Engineering and Experiments, ALENEX 2013, New Orleans, Louisiana, USA, January 7, 2013, 55--69. Philadelphia, PA: Society for Industrial and Applied Mathematics. doi:10.1137/1.9781611972931.5PUB | DOI
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910010Scheid, A., & Nebel, M. (2012). Evaluating the Effect of Disturbed Ensemble Distributions on SCFG Based Statistical Sampling of RNA Secondary Structures. BMC Bioinformatics, 13(1), 159. doi:10.1186/1471-2105-13-159PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910009M. Reidys, C., W. D. Huang, F., E. Andersen, J., C. Penner, R., F. Stadler, P., & Nebel, M. (2012). Addendum: topology and prediction of RNA pseudoknots. Bioinformatics, 28(2), 300. doi:10.1093/bioinformatics/btr643PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910012Nebel, M., & Weinberg, F. (2012). Algebraic and Combinatorial Properties of Common RNA Pseudoknot Classes with Applications. Journal of Computational Biology, 19(10), 1134--1150. doi:10.1089/cmb.2011.0094PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Konferenzbeitrag | PUB-ID: 2910014Nebel, M., & Scheid, A. (2012). A n^2 RNA Secondary Structure Prediction Algorithm. BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1 - 4 February, 2012., 66--75.PUB
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2012 | Zeitschriftenaufsatz | PUB-ID: 2910011Yu Jin, E., & Nebel, M. (2012). A Combinatorial Proof of the Recurrence for Rook Paths. Electr. J. Comb., 19(1), P57.PUB
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910013Yu Jin, E., & Nebel, M. (2012). The Expected Order of Saturated RNA Secondary Structures. In H. - K. Hwang & C. Martínez (Eds.), 2012 Proceedings of the Ninth Workshop on Analytic Algorithmics and Combinatorics (ANALCO) (pp. 84-91). SIAM. doi:10.1137/1.9781611973020.11PUB | DOI
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2910015Wild, S., & Nebel, M. (2012). Average Case Analysis of Java 7's Dual Pivot Quicksort. In L. Epstein & P. Ferragina (Eds.), Lecture Notes in Computer Science: Vol. 7501. Algorithms - ESA 2012. 20th Annual European Symposium, Ljubljana, Slovenia, September 10-12, 2012. Proceedings (pp. 825-836). Berlin ; Heidelberg: Springer. doi:10.1007/978-3-642-33090-2_71PUB | DOI | arXiv
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910017Nebel, M., Scheid, A., & Weinberg, F. (2011). Random generation of RNA secondary structures according to native distributions. Algorithms for Molecular Biology, 6(1), 24. doi:10.1186/1748-7188-6-24PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910021Nebel, M., & Scheid, A. (2011). Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model. IEEE/ACM Trans. Comput. Biology Bioinform., 8(6), 1468--1482. doi:10.1109/TCBB.2010.126PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910022Nebel, M., & Scheid, A. (2011). Evaluation of a sophisticated SCFG design for RNA secondary structure prediction. Theory in Biosciences, 130(4), 313--336. doi:10.1007/s12064-011-0139-7PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910018M. Reidys, C., W. D. Huang, F., E. Andersen, J., C. Penner, R., F. Stadler, P., & Nebel, M. (2011). Topology and prediction of RNA pseudoknots. Bioinformatics, 27(8), 1076--1085. doi:10.1093/bioinformatics/btr090PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910019Nebel, M., Wild, S., Holzhauser, M., Hüttenberger, L., Reitzig, R., Sperber, M., & Stoeck, T. (2011). Jaguc - a Software package for Environmental Diversity Analyses. J. Bioinformatics and Computational Biology, 9(6), 749--773. doi:10.1142/S0219720011005781PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | PUB-ID: 2910020Nebel, M., M. Reidys, C., & R. Wang, R. (2011). Loops in Canonical RNA Pseudoknot Structures. Journal of Computational Biology, 18(12), 1793--1806. doi:10.1089/cmb.2010.0022PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Konferenzbeitrag | PUB-ID: 2910023Afzal Uzmi, Z., Nebel, M., Tariq, A., Jawad, S., Chen, R., Shaikh, A., Wang, J., et al. (2011). SMALTA: practical and near-optimal FIB aggregation. In Association for Computing Machinery (Ed.), ACM Digital Library. Proceedings of the 2011 Conference on Emerging Networking Experiments and Technologies, Co-NEXT '11, Tokyo, Japan, December 6-9, 2011 (p. 29). New York, NY: ACM Press. doi:10.1145/2079296.2079325PUB | DOI
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2010 | Konferenzbeitrag | PUB-ID: 2910027Weinberg, F., & Nebel, M. (2010). Extending Stochastic Context-Free Grammars for an Application in Bioinformatics. Language and Automata Theory and Applications, 4th International Conference, LATA 2010, Trier, Germany, May 24-28, 2010. Proceedings, 585--595. Berlin, Heidelberg: Springer Berlin Heidelberg. doi:10.1007/978-3-642-13089-2_49PUB | DOI
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2009 | Zeitschriftenaufsatz | PUB-ID: 2910028Nebel, M., & Scheid, A. (2009). On quantitative effects of RNA shape abstraction. Theory in Biosciences, 128(4), 211--225. doi:10.1007/s12064-009-0074-zPUB | DOI | WoS | PubMed | Europe PMC
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2007 | Konferenzbeitrag | PUB-ID: 2910032Nebel, M. (2007). Compact Descriptions for Efficient Algorithms. 9th International Workshop on Descriptional Complexity of Formal Systems - DCFS 2007, High Tatras, Slovakia, July 20 - 22, 2007, 27--40.PUB
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2004 | Konferenzbeitrag | PUB-ID: 2910036Nebel, M. (2004). Identifying Good Predictions of RNA Secondary Structure. Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004, 423--434.PUB
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2003 | Zeitschriftenaufsatz | PUB-ID: 2910037Nebel, M. (2003). Combinatorial Properties of RNA Secondary Structures. Journal of Computational Biology, 9(3), 541--573. doi:10.1089/106652702760138628PUB | DOI | WoS | PubMed | Europe PMC
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2002 | Zeitschriftenaufsatz | PUB-ID: 2910038Nebel, M. (2002). The Stack-Size of Combinatorial Tries Revisited. Discrete Mathematics & Theoretical Computer Science, 5(1), 1--16.PUB
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2001 | Zeitschriftenaufsatz | PUB-ID: 2910042Nebel, M. (2001). On the Power of Subroutines for Finite State Machines. Journal of Automata, Languages and Combinatorics, 6(1), 51--74.PUB
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1997 | Zeitschriftenaufsatz | PUB-ID: 2910045Nebel, M. (1997). New Results on the Stack Ramification of Binary Trees. Journal of Automata, Languages and Combinatorics, 2(3), 161--176.PUB
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1997 | Konferenzbeitrag | PUB-ID: 2910046Nebel, M. (1997). On the Average Complexity of the Membership Problem for a Generalized Dyck Language. Fundamentals of Computation Theory, 11th International Symposium, FCT '97, Krakow, Poland, September 1-3, 1997, Proceedings, 352--363. Berlin, Heidelberg: Springer Berlin Heidelberg. doi:10.1007/BFb0036197PUB | DOI
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1996 | Zeitschriftenaufsatz | PUB-ID: 2910047Nebel, M. (1996). Digital Search Trees with Keys of Variable Length. ITA, 30(6), 507--520.PUB