20 Publikationen
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2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2968524Ni, Z., Wolk, M., Jukes, G., Espinosa, K.M., Ahrends, R., Aimo, L., Alvarez-Jarreta, J., Andrews, S., Andrews, R., Bridge, A., Clair, G.C., Conroy, M.J., Fahy, E., Gaud, C., Goracci, L., Hartler, J., Hoffmann, N., Kopczyinki, D., Korf, A., Lopez-Clavijo, A.F., Malik, A., Ackerman, J.M., Molenaar, M.R., O'Donovan, C., Pluskal, T., Shevchenko, A., Slenter, D., Siuzdak, G., Kutmon, M., Tsugawa, H., Willighagen, E.L., Xia, J., O'Donnell, V.B., Fedorova, M.: Guiding the choice of informatics software and tools for lipidomics research applications. Nature Methods . (2022).PUB | DOI | WoS | PubMed | Europe PMC
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2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2966976Ekroos, K., Ejsing, C., Liebisch, G., Koefeler, H., McDonald, J., Holcapek, M., Hoffmann, N., Ahrends, R.: Update on guidelines for lipidomics analysis and reporting. Journal of the American Oil Chemists' Society. 99, 13-14 (2022).PUB | DOI | WoS
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2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2965107McDonald, J.G., Ejsing, C.S., Kopczynski, D., Holcapek, M., Aoki, J., Arita, M., Arita, M., Baker, E.S., Bertrand-Michel, J., Bowden, J.A., Brugger, B., Ellis, S.R., Fedorova, M., Griffiths, W.J., Han, X., Hartler, J., Hoffmann, N., Koelmel, J.P., Kofeler, H.C., Mitchell, T.W., O'Donnell, V.B., Saigusa, D., Schwudke, D., Shevchenko, A., Ulmer, C.Z., Wenk, M.R., Witting, M., Wolrab, D., Xia, Y., Ahrends, R., Liebisch, G., Ekroos, K.: Introducing the Lipidomics Minimal Reporting Checklist. Nature Metabolism . (2022).PUB | DOI | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2962357Kopczynski, D., Hoffmann, N., Peng, B., Liebisch, G., Spener, F., Ahrends, R.: Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures. Analytical Chemistry. : acs.analchem.1c05430 (2022).PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959919Borgmeyer, M., Coman, C., Has, C., Schött, H.-F., Li, T., Westhoff, P., Cheung, Y.F.H., Hoffmann, N., Yuanxiang, P.A., Behnisch, T., Gomes, G.M., Dumenieu, M., Schweizer, M., Chocholoušková, M., Holčapek, M., Mikhaylova, M., Kreutz, M.R., Ahrends, R.: Multiomics of synaptic junctions reveals altered lipid metabolism and signaling following environmental enrichment. Cell Reports. 37, : 109797 (2021).PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958747Kofeler, H.C., Ahrends, R., Baker, E.S., Ekroos, K., Han, X., Hoffmann, N., Holcapek, M., Wenk, M.R., Liebisch, G.: Recommendations for Good Practice in Mass Spectrometry-Based Lipidomics. Journal of Lipid Research. 62, : 100138 (2021).PUB | DOI | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956707Peng, B., Kopczynski, D., Pratt, B.S., Ejsing, C.S., Burla, B., Hermansson, M., Benke, P.I., Tan, S.H., Chan, M.Y., Torta, F., Schwudke, D., Meckelmann, S.W., Coman, C., Schmitz, O.J., MacLean, B., Manke, M.-C., Borst, O., Wenk, M.R., Hoffmann, N., Ahrends, R.: LipidCreator workbench to probe the lipidomic landscape. Nature Communications. 11, : 2057 (2020).PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956709Wibberg, D., Batut, B., Belmann, P., Blom, J., Glöckner, F.O., Grüning, B., Hoffmann, N., Kleinbölting, N., Rahn, R., Rey, M., Scholz, U., Sharan, M., Tauch, A., Trojahn, U., Usadel, B., Kohlbacher, O.: The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. F1000Research. 8, : 1877 (2019).PUB | DOI
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956712Hoffmann, N., Rein, J., Sachsenberg, T., Hartler, J., Haug, K., Mayer, G., Alka, O., Dayalan, S., Pearce, J.T.M., Rocca-Serra, P., Qi, D., Eisenacher, M., Perez-Riverol, Y., Vizcaíno, J.A., Salek, R.M., Neumann, S., Jones, A.R.: mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. Analytical Chemistry. 91, 3302-3310 (2019).PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956711Hoffmann, N., Hartler, J., Ahrends, R.: jmzTab-M: A Reference Parser, Writer, and Validator for the Proteomics Standards Initiative mzTab 2.0 Metabolomics Standard. Analytical Chemistry. 91, 12615-12618 (2019).PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956710Stanstrup, J., Broeckling, C., Helmus, R., Hoffmann, N., Mathé, E., Naake, T., Nicolotti, L., Peters, K., Rainer, J., Salek, R., Schulze, T., Schymanski, E., Stravs, M., Thévenot, E., Treutler, H., Weber, R., Willighagen, E., Witting, M., Neumann, S.: The metaRbolomics Toolbox in Bioconductor and beyond. Metabolites. 9, : 200 (2019).PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956713Peng, B., Geue, S., Coman, C., Münzer, P., Kopczynski, D., Has, C., Hoffmann, N., Manke, M.-C., Lang, F., Sickmann, A., Gawaz, M., Borst, O., Ahrends, R.: Identification of key lipids critical for platelet activation by comprehensive analysis of the platelet lipidome. Blood. 132, e1-e12 (2018).PUB | DOI | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956714Schwudke, D., Shevchenko, A., Hoffmann, N., Ahrends, R.: Lipidomics informatics for life-science. Journal of Biotechnology. 261, 131-136 (2017).PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682Henning, P., Kuich, J.L., Hoffmann, N., Stefan, K.: Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data. Frontiers in Bioengineering and Biotechnology. 2, 84 (2015).PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941Hoffmann, N., Wilhelm, M., Doebbe, A., Niehaus, K., Stoye, J.: BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry. Bioinformatics. 30, 988-995 (2014).PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239Hoffmann, N., Keck, M., Neuweger, H., Wilhelm, M., Högy, P., Niehaus, K., Stoye, J.: Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets. BMC Bioinformatics. 13, : 21 (2012).PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2012 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2468382Hoffmann, N., Stoye, J.: Generic Software Frameworks for GC-MS Based Metabolomics. In: Roessner, U. (ed.) Metabolomics. p. 73-98. InTech (2012).PUB | PDF | DOI | Download (ext.)
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319Hoffmann, N., Stoye, J.: ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. Bioinformatics. 25, 2080-2081 (2009).PUB | DOI | WoS | PubMed | Europe PMC