72 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996Wibberg, D.; Genzel, F.; Verwaaijen, B.; Blom, J.; Rupp, O.; Goesmann, A.; Zrenner, R.; Grosch, R.; Pühler, A.; Schlüter, A. (2021): Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14 Journal of Fungi,7:(10):832PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720Nguyen, T. V.; Wibberg, D.; Battenberg, K.; Blom, J.; Vanden Heuvel, B.; Berry, A. M.; Kalinowski, J.; Pawlowski, K. (2016): An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH BMC Genomics,17:(1):796PUB | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976Blifernez-Klassen, O.; Wibberg, D.; Winkler, A.; Blom, J.; Goesmann, A.; Kalinowski, J.; Kruse, O. (2016): Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa) Genome Announcements,4:(3):e00524-16PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279Huja, S.; Oren, Y.; Trost, E.; Brzuszkiewicz, E.; Biran, D.; Blom, J.; Goesmann, A.; Gottschalk, G.; Hacker, J.; Ron, E. Z.; Dobrindt, U. (2015): Genomic Avenue to Avian Colisepticemia mBio,6:(1):e01681-14PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035Arnold, M.; Wibberg, D.; Blom, J.; Schatschneider, S.; Winkler, A.; Kutter, Y.; Rückert, C.; Albersmeier, A.; Albaum, S.; Goesmann, A.; Zange, S.; Heesemann, J.; Pühler, A.; Hogardt, M.; Vorhölter, F. - J. (2015): Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum Genome announcements,3:(4):e00680-15PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944Tielen, P.; Wibberg, D.; Blom, J.; Rosin, N.; Meyer, A. - K.; Bunk, B.; Schobert, M.; Tüpker, R.; Schatschneider, S.; Rückert, C.; Albersmeier, A.; Goesmann, A.; Vorhölter, F. - J.; Jahn, D.; Pühler, A. (2014): Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection Genome announcements,2:(1)PUB | DOI | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658539Smits, T. H. M.; Guerrero-Prieto, V. M.; Hernández-Escarcega, G.; Blom, J.; Goesmann, A.; Rezzonico, F.; Duffy, B.; Stockwell, V. O. (2014): Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host Interactions Genome announcements,2:(1)PUB | DOI | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926Wibberg, D.; Tielen, P.; Blom, J.; Rosin, N.; Schobert, M.; Tüpker, R.; Schatschneider, S.; Spilker, D.; Albersmeier, A.; Goesmann, A.; Vorhölter, F. - J.; Pühler, A.; Jahn, D. (2014): Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38 Genome announcements,2:(2):e00161-14PUB | PDF | DOI | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2582332Guimarães, L. C.; Soares, S. C.; Albersmeier, A.; Blom, J.; Jaenicke, S.; Azevedo, V.; Soriano, F.; Tauch, A.; Trost, E. (2013): Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis Genome announcements,1:(3):e00264-13PUB | DOI | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552500Soares, S. C.; Silva, A.; Trost, E.; Blom, J.; Ramos, R.; Carneiro, A.; Ali, A.; Santos, A. R.; Pinto, A. C.; Diniz, C.; Barbosa, E. G. V.; Dorella, F. A.; Aburjaile, F.; Rocha, F. S.; Nascimento, K. K. F.; Guimares, L. C.; Almeida, S.; Hassan, S. S.; Bakhtiar, S. M.; Pereira, U. P.; Abreu, V. A. C.; Schneider, M. P. C.; Miyoshi, A.; Tauch, A.; Azevedo, V. (2013): The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains PLoS ONE,8:(1):e53818PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635520Dam, B.; Dam, S.; Blom, J.; Liesack, W. (2013): Genome Analysis Coupled with Physiological Studies Reveals a Diverse Nitrogen Metabolism in Methylocystis sp Strain SC2 Plos One,8:(10):e74767PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2637220Wu, H.; Qiao, J.; Blom, J.; Rückert, C.; Reva, O.; Gao, X.; Borriss, R. (2013): The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome Genome announcements,1:(6): e00941-13.PUB | DOI | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607974Niu, B.; Vater, J.; Rückert, C.; Blom, J.; Lehmann, M.; Ru, J. - J.; Chen, X. - H.; Wang, Q.; Borriss, R. (2013): Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1 BMC microbiology,13:(1):137PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342He, P.; Hao, K.; Blom, J.; Rückert, C.; Vater, J.; Mao, Z.; Wu, Y.; Hou, M.; He, P.; He, Y.; Borriss, R. (2013): Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites Journal of biotechnology,164:(2): 281-291.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756Smits, T. H. M.; Rezzonico, F.; López, M. M.; Blom, J.; Goesmann, A.; Frey, J. E.; Duffy, B. (2013): Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics Systematic and applied microbiology,36:(7): 449-456.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427Wibberg, D.; Blom, J.; Rückert, C.; Winkler, A.; Albersmeier, A.; Pühler, A.; Schlüter, A.; Scharf, B. E. (2013): Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis Journal of Biotechnology,168:(4): 731-733.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238Barbe, S.; Llop, P.; Blom, J.; Cabrefiga, J.; Goesmann, A.; Duffy, B.; Montesinos, E.; Smits, T. H. M.; Lopez, M. M. (2013): Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence Plant Pathology,62:(4): 786-798.PUB | DOI | WoS
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460Roetzer, A.; Diel, R.; Kohl, T. A.; Rückert, C.; Nübel, U.; Blom, J.; Wirth, T.; Jaenicke, S.; Schuback, S.; Rüsch-Gerdes, S.; Supply, P.; Kalinowski, J.; Niemann, S. (2013): Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study PLoS medicine,10:(2):e1001387PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576539Wichmann, F.; Vorhölter, F. - J.; Hersemann, L.; Widmer, F.; Blom, J.; Niehaus, K.; Reinhard, S.; Conradin, C.; Kölliker, R. (2013): The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection Molecular plant pathology,14:(6): 576-588.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526Koeck, D. E.; Wibberg, D.; Koellmeier, T.; Blom, J.; Jaenicke, S.; Winkler, A.; Albersmeier, A.; Zverlov, V. V.; Pühler, A.; Schwarz, W. H.; Schlüter, A. (2013): Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation Journal of Biotechnology,168:(1): 62-63.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938Mann, R. A.; Smits, T. H. M.; Bühlmann, A.; Blom, J.; Goesmann, A.; Frey, J. E.; Plummer, K. M.; Beer, S. V.; Luck, J.; Duffy, B.; Rodoni, B. (2013): Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core PLOS ONE,8:(2):e55644PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286Luque-Almagro, V. M.; Acera, F.; Igeño, M. I.; Wibberg, D.; Roldán, M. D.; Sáez, L. P.; Hennig, M.; Quesada, A.; Huertas, M. J.; Blom, J.; Merchán, F.; Escribano, M. P.; Jaenicke, S.; Estepa, J.; Guijo, M. I.; Martínez-Luque, M.; Macías, D.; Szczepanowski, R.; Becerra, G.; Ramirez, S.; Carmona, M. I.; Gutiérrez, O.; Manso, I.; Pühler, A.; Castillo, F.; Moreno-Vivián, C.; Schlüter, A.; Blasco, R. (2013): Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344 Environmental Microbiology,15:(1): 253-270.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455De Maayer, P.; Chan, W. - Y.; Blom, J.; Venter, S. N.; Duffy, B.; Smits, T. H. M.; Coutinho, T. A. (2012): The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification Bmc Genomics,13:(1):625PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160Schröder, J.; Maus, I.; Meyer, K.; Wördemann, S.; Blom, J.; Jaenicke, S.; Schneider, J.; Trost, E.; Tauch, A. (2012): Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient BMC Genomics,13:(1):141PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347Trost, E.; Blom, J.; de Castro Soares, S.; Huang, I. - H.; Al-Dilaimi, A.; Schröder, J.; Jaenicke, S.; Dorella, F. A.; Rocha, F. S.; Miyoshi, A.; Azevedo, V.; Schneider, M. P.; Silva, A.; Camello, T. C.; Sabbadini, P. S.; Santos, C. S.; Santos, L. S.; Hirata, R. J.; Mattos-Guaraldi, A. L.; Efstratiou, A.; Schmitt, M. P.; Ton-That, H.; Tauch, A. (2012): Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia Journal of bacteriology,194:(12): 3199-3215.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949Zschuttig, A.; Zimmermann, K.; Blom, J.; Goesmann, A.; Pohlmann, C.; Gunzer, F. (2012): Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10 PLoS ONE,7:(3):e33351PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221Jankowitsch, F.; Schwarz, J.; Rückert, C.; Gust, B.; Szczepanowski, R.; Blom, J.; Pelzer, S.; Kalinowski, J.; Mack, M. (2012): The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin Journal of bacteriology,194:(24): 6818-6827.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519Ruijter, J. M.; Pfaffl, M. W.; Zhao, S.; Spiess, A. N.; Boggy, G.; Blom, J.; Rutledge, R. G.; Sisti, D.; Lievens, A.; De Preter, K.; Derveaux, S.; Hellemans, J.; Vandesompele, J. (2012): Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications Methods. A companion to methods in enzymology (San Diego, Calif.),59:(1): 32-46.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535Heinl, S.; Wibberg, D.; Eikmeyer, F. G.; Szczepanowski, R.; Blom, J.; Linke, B.; Goesmann, A.; Grabherr, R.; Schwab, H.; Pühler, A.; Schlüter, A. (2012): Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage Journal of Biotechnology,161:(2): 153-166.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256Filippini, M.; Qi, W.; Blom, J.; Goesmann, A.; Smits, T. H. M.; Bagheri, H. C. (2012): Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium Journal of bacteriology,194:(13): 3555.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853Brankatschk, K.; Blom, J.; Goesmann, A.; Smits, T. H. M.; Duffy, B. (2012): Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars International journal of food microbiology,155:(3): 247-256.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486204Blom, J.; Rückert, C.; Niu, B.; Wang, Q.; Borriss, R. (2012): The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A Journal of bacteriology,194:(7): 1845-1846.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774Schneider, J.; Andrea, H.; Blom, J.; Jaenicke, S.; Rückert, C.; Schorsch, C.; Szczepanowski, R.; Farwick, M.; Goesmann, A.; Pühler, A.; Schaffer, S.; Tauch, A.; Köhler, T.; Brinkrolf, K. (2012): Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10 Eukaryotic Cell,11:(12): 1582-1583.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081De Maayer, P.; Chan, W. Y.; Rezzonico, F.; Bühlmann, A.; Venter, S. N.; Blom, J.; Goesmann, A.; Frey, J. E.; Smits, T. H. M.; Duffy, B.; Coutinho, T. A. (2012): Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342 Journal of Bacteriology,194:(6): 1615-1616.PUB | DOI | WoS | PubMed | Europe PMC | GenBank
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210Parreira, V. R.; Costa, M.; Eikmeyer, F. G.; Blom, J.; Prescott, J. F. (2012): Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids PLoS ONE,7:(11):e49753PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269Strobel, T.; Al-Dilaimi, A.; Blom, J.; Gessner, A.; Kalinowski, J.; Luzhetska, M.; Pühler, A.; Szczepanowski, R.; Bechthold, A.; Rückert, C. (2012): Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae BMC Genomics,13:(1):465PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610Schork, S.; Schlüter, A.; Blom, J.; Schneiker-Bekel, S.; Pühler, A.; Goesmann, A.; Frosch, M.; Schoen, C. (2012): Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198 Journal of Bacteriology,194:(18): 5144-5145.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281Zischka, M.; Kuenne, C.; Blom, J.; Dabrowski, P. W.; Linke, B.; Hain, T.; Nitsche, A.; Goesmann, A.; Larsen, J.; Jensen, L. B.; Witte, W.; Werner, G. (2012): Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32 Journal of Bacteriology,194:(19): 5490-5491.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298Maus, I.; Wibberg, D.; Stantscheff, R.; Eikmeyer, F. G.; Seffner, A.; Boelter, J.; Szczepanowski, R.; Blom, J.; Jaenicke, S.; König, H.; Pühler, A.; Schlüter, A. (2012): Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester Journal of Bacteriology,194:(19): 5487-5488.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2502106Hao, K.; He, P.; Blom, J.; Rückert, C.; Mao, Z.; Wu, Y.; He, Y.; Borriss, R. (2012): The Genome of Plant Growth-Promoting Bacillus amyloliquefaciens subsp. plantarum Strain YAU B9601-Y2 Contains a Gene Cluster for Mersacidin Synthesis Journal of bacteriology,194:(12): 3264-3265.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946Mann, R. A.; Blom, J.; Bühlmann, A.; Plummer, K. M.; Beer, S. V.; Luck, J. E.; Goesmann, A.; Frey, J. E.; Rodoni, B. C.; Duffy, B.; Smits, T. H. M. (2012): Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element Gene,504:(1): 6-12.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493Hinse, D.; Vollmer, T.; Rückert, C.; Blom, J.; Kalinowski, J.; Knabbe, C.; Dreier, J. (2011): Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis BMC Genomics,12:(1):400PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398Brankatschk, K.; Blom, J.; Goesmann, A.; Smits, T. H. M.; Duffy, B. (2011): Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden Journal of Bacteriology,193:(8): 2066.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634Pothier, J. F.; Vorhölter, F. - J.; Blom, J.; Goesmann, A.; Pühler, A.; Smits, T. H.; Duffy, B. (2011): The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis FEMS Microbiology Letters,323:(1): 52-60.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767Niu, B.; Rückert, C.; Blom, J.; Wang, Q.; Borriss, R. (2011): The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides. Journal of Bacteriology,193:(20): 5862-5863.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Wibberg, D.; Blom, J.; Jaenicke, S.; Kollin, F.; Rupp, O.; Scharf, B.; Schneiker-Bekel, S.; Szczepanowski, R.; Goesmann, A.; Setubal, J. C.; Schmitt, R.; Pühler, A.; Schlüter, A. (2011): Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid Journal of Biotechnology,155:(1): 50-62.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511Rückert, C.; Blom, J.; Chen, X. H.; Reva, O.; Borriss, R. (2011): Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42 Journal of Biotechnology,155:(1): 78-85.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954Borriss, R.; Chen, X. - H.; Rückert, C.; Blom, J.; Becker, A.; Baumgarth, B.; Fan, B.; Pukall, R.; Schumann, P.; Sproer, C.; Junge, H.; Vater, J.; Pühler, A.; Klenk, H. - P. (2011): Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons Int J Syst Evol Microbiol,61:(8): 1786-1801.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472468Llop, P.; Cabrefiga, J.; Smits, T. H. M.; Dreo, T.; Barbé, S.; Pulawska, J.; Bultreys, A.; Blom, J.; Duffy, B.; Montesinos, E.; Lopez, M. M. (2011): Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen PLoS one,6:(12):e28651PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445Schneider, J.; Blom, J.; Jaenicke, S.; Linke, B.; Brinkrolf, K.; Neuweger, H.; Tauch, A.; Goesmann, A. (2011): RAPYD - Rapid Annotation Platform for Yeast Data Journal of Biotechnology,155:(1): 118-126.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104Smits, T. H. M.; Rezzonico, F.; Kamber, T.; Blom, J.; Goesmann, A.; Ishimaru, C. A.; Frey, J. E.; Stockwell, V. O.; Duffy, B. (2011): Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1 PLoS ONE,6:(7):e22247PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455Krol, E.; Blom, J.; Winnebald, J.; Berhoerster, A.; Barnett, M. J.; Goesmann, A.; Baumbach, J.; Becker, A. (2011): RhizoRegNet-A database of rhizobial transcription factors and regulatory networks Journal of Biotechnology,155:(1): 127-134.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518Szczepanowski, R.; Eikmeyer, F. G.; Harfmann, J.; Blom, J.; Rogers, L. M.; Top, E. M.; Schlüter, A. (2011): Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions Journal of Biotechnology,155:(1): 95-103.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2382565Borriss, R.; Rückert, C.; Blom, J.; Bezuidt, O.; Reva, O.; Klenk, H. P. (2011): Whole Genome Sequence Comparisons in Taxonomy. In: F. Rainey; A. Oren (Hrsg.): Taxonomy of Prokaryotes (Methods in Microbiology). Waltham, MA, USA: Academic Press,. (Methods in microbiology, 38). S. 473.PUB | DOI | WoS
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032Joseph, B.; Schwarz, R. F.; Linke, B.; Blom, J.; Becker, A.; Claus, H.; Goesmann, A.; Frosch, M.; Mueller, T.; Vogel, U.; Schoen, C. (2011): Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome PLoS ONE,6:(4):e18441PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389Schoen, C.; Weber-Lehmann, J.; Blom, J.; Joseph, B.; Goesmann, A.; Strittmatter, A.; Frosch, M. (2011): Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594 Journal of Bacteriology,193:(8): 2064-2065.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952Blom, J.; Jakobi, T.; Doppmeier, D.; Jaenicke, S.; Kalinowski, J.; Stoye, J.; Goesmann, A. (2011): Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming Bioinformatics,27:(10): 1351-1358.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289928Kant, R.; Blom, J.; Palva, A.; Siezen, R. J.; de Vos, W. M. (2011): Comparative genomics of Lactobacillus Microbial Biotechnology,4:(3): 323-332.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892Schneiker-Bekel, S.; Wibberg, D.; Bekel, T.; Blom, J.; Linke, B.; Neuweger, H.; Stiens, M.; Vorhölter, F. - J.; Weidner, S.; Goesmann, A.; Pühler, A.; Schlüter, A. (In Press): The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome Journal of Biotechnology,155:(1): 20-33.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955Hackl, M.; Jakobi, T.; Blom, J.; Doppmeier, D.; Brinkrolf, K.; Szczepanowski, R.; Bernhart, S. H.; Höner zu Siederdissen, C.; Bort, J. A. H.; Wieser, M.; Kunert, R.; Jeffs, S.; Hofacker, I. L.; Goesmann, A.; Pühler, A.; Borth, N.; Grillari, J. (2011): Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering Journal of Biotechnology,153:(1-2): 62-75.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058Margaret, I.; Becker, A.; Blom, J.; Bonilla, I.; Goesmann, A.; Göttfert, M.; Lloret, J.; Mittard-Runte, V.; Rückert, C.; Ruiz-Sainz, J. - E.; Vinardell, J. M.; Weidner, S. (2011): Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean Journal of Biotechnology,155:(1): 11-19.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003418Powney, R.; Smits, T. H. M.; Sawbridge, T.; Frey, B.; Blom, J.; Frey, J. E.; Plummer, K. M.; Beer, S. V.; Luck, J.; Duffy, B.; Rodoni, B. (2011): Genome Sequence of an Erwinia amylovora Strain with Pathogenicity Restricted to Rubus Plants Journal of Bacteriology,193:(3): 785-786.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692Schneider, J.; Vorhölter, F. - J.; Trost, E.; Blom, J.; Musa, Y. R.; Neuweger, H.; Niehaus, K.; Schatschneider, S.; Tauch, A.; Goesmann, A. (2010): CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks Genetics and Molecular Research,9:(3): 1660-1672.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275Trost, E.; Götker, S.; Schneider, J.; Schneiker-Bekel, S.; Szczepanowski, R.; Tilker, A.; Viehöver, P.; Arnold, W.; Bekel, T.; Blom, J.; Gartemann, K. - H.; Linke, B.; Goesmann, A.; Pühler, A.; Shukla, S. K.; Tauch, A. (2010): Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion BMC Genomics,11:(1):91PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445Smits, T. H. M.; Rezzonico, F.; Kamber, T.; Blom, J.; Goesmann, A.; Frey, J. E.; Duffy, B. (2010): Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp. MOLECULAR PLANT-MICROBE INTERACTIONS,23:(4): 384-393.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907Mittard-Runte, V.; Bekel, T.; Blom, J.; Dondrup, M.; Henckel, K.; Jaenicke, S.; Krause, L.; Linke, B.; Neuweger, H.; Schneiker-Bekel, S.; Goesmann, A. (2010): Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. In: J. Mark Cock; Kristin Tessmar-Raible; Catherine Boyen; Frédérique Viard (Hrsg.): Introduction to Marine Genomics (Advances in Marine Genomics). Netherlands: Springer Netherlands. (1). S. 315-396.PUB | DOI
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110Joseph, B.; Schneiker-Bekel, S.; Schramm-Glueck, A.; Blom, J.; Claus, H.; Linke, B.; Schwarz, R. F.; Becker, A.; Goesmann, A.; Frosch, M.; Schoen, C. (2010): Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence JOURNAL OF BACTERIOLOGY,192:(20): 5363-5377.PUB | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187Blom, J.; Albaum, S.; Doppmeier, D.; Pühler, A.; Vorhölter, F. - J.; Zakrzewski, M.; Goesmann, A. (2009): EDGAR: a software framework for the comparative analysis of prokaryotic genomes BMC Bioinformatics,10:(1):154PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257Schoen, C.; Blom, J.; Claus, H.; Schramm-Glueck, A.; Brandt, P.; Mueller, T.; Goesmann, A.; Joseph, B.; Konietzny, S.; Kurzai, O.; Schmitt, C.; Friedrich, T.; Linke, B.; Vogel, U.; Frosch, M. (2008): Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,105:(9): 3473-3478.PUB | DOI | WoS | PubMed | Europe PMC | GenBank
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939Tauch, A.; Schneider, J.; Szczepanowski, R.; Tilker, A.; Viehöver, P.; Gartemann, K. - H.; Arnold, W.; Blom, J.; Brinkrolf, K.; Brune, I.; Goetker, S.; Weisshaar, B.; Goesmann, A.; Droege, M.; Pühler, A. (2008): Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids Journal of Biotechnology,136:(1-2): 22-30.PUB | DOI | WoS | PubMed | Europe PMC