17 Publikationen

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  • [17]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
    Stolze, Y., Bremges, A., Maus, I., Pühler, A., Sczyrba, A., Schlüter, A.: Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants. Microbial Biotechnology. 11, 667-679 (2018).
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  • [16]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
    Verwaaijen, B., Wibberg, D., Nelkner, J., Gordin, M., Rupp, O., Winkler, A., Bremges, A., Blom, J., Grosch, R., Pühler, A., Schlüter, A.: Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome. Journal of Biotechology. 267, 12-18 (2018).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
    Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., Bremges, A., Fritz, A., Garrido-Oter, R., Jørgensen, T.S., Shapiro, N., Blood, P.D., Gurevich, A., Bai, Y., Turaev, D., DeMaere, M.Z., Chikhi, R., Nagarajan, N., Quince, C., Meyer, F., Balvočiūtė, M., Hansen, L.H., Sørensen, S.J., Chia, B.K.H., Denis, B., Froula, J.L., Wang, Z., Egan, R., Don Kang, D., Cook, J.J., Deltel, C., Beckstette, M., Lemaitre, C., Peterlongo, P., Rizk, G., Lavenier, D., Wu, Y.-W., Singer, S.W., Jain, C., Strous, M., Klingenberg, H., Meinicke, P., Barton, M.D., Lingner, T., Lin, H.-H., Liao, Y.-C., Silva, G.G.Z., Cuevas, D.A., Edwards, R.A., Saha, S., Piro, V.C., Renard, B.Y., Pop, M., Klenk, H.-P., Göker, M., Kyrpides, N.C., Woyke, T., Vorholt, J.A., Schulze-Lefert, P., Rubin, E.M., Darling, A.E., Rattei, T., McHardy, A.C.: Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods. 14, 1063-1071 (2017).
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  • [14]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516 OA
    Maus, I., Bremges, A., Stolze, Y., Hahnke, S., Cibis, K.G., Koeck, D.E., Kim, Y.S., Kreubel, J., Hassa, J., Wibberg, D., Weimann, A., Off, S., Stantscheff, R., Zverlov, V.V., Schwarz, W.H., König, H., Liebl, W., Scherer, P., McHardy, A.C., Sczyrba, A., Klocke, M., Pühler, A., Schlüter, A.: Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes. Biotechnology for Biofuels. 10, : 264 (2017).
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [13]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
    Maus, I., Koeck, D.E., Cibis, K.G., Hahnke, S., Kim, Y.S., Langer, T., Kreubel, J., Erhard, M., Bremges, A., Off, S., Stolze, Y., Jaenicke, S., Goesmann, A., Sczyrba, A., Scherer, P., König, H., Schwarz, W.H., Zverlov, V.V., Liebl, W., Pühler, A., Schlüter, A., Klocke, M.: Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels. 9, : 171 (2016).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
    Bremges, A., Singer, E., Woyke, T., Sczyrba, A.: MeCorS: Metagenome-enabled error correction of single cell sequencing reads. Bioinformatics. 32, 2199-2201 (2016).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815 OA
    Stolze, Y., Bremges, A., Rumming, M., Henke, C., Maus, I., Pühler, A., Sczyrba, A., Schlüter, A.: Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants. Biotechnology for Biofuels. 9, : 156 (2016).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [10]
    2016 | Bielefelder E-Dissertation | PUB-ID: 2906743 OA
    Bremges, A.: Assembling the microbial dark matter. Universität Bielefeld, Bielefeld (2016).
    PUB | PDF
     
  • [9]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
    Maus, I., Cibis, K.G., Bremges, A., Stolze, Y., Wibberg, D., Tomazetto, G., Blom, J., Sczyrba, A., König, H., Pühler, A., Schlüter, A.: Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment. Journal of Biotechnology. 232, 50-60 (2016).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
    Wibberg, D., Bremges, A., Dammann-Kalinowski, T., Maus, I., Igeño, M.I., Vogelsang, R., König, C., Luque-Almagro, V.M., Roldán, M.D., Sczyrba, A., Moreno-Vivián, C., Blasco, R., Pühler, A., Schlüter, A.: Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing. Journal of Biotechnology. 232, 61-68 (2016).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [7]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
    Ortseifen, V., Stolze, Y., Maus, I., Sczyrba, A., Bremges, A., Albaum, S., Jaenicke, S., Fracowiak, J., Pühler, A., Schlüter, A.: An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology. 231, 268-279 (2016).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906 OA
    Bremges, A., Maus, I., Belmann, P., Eikmeyer, F.G., Winkler, A., Albersmeier, A., Pühler, A., Schlüter, A., Sczyrba, A.: Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant. GigaScience. 4, : 33 (2015).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782501
    Belmann, P., Dröge, J., Bremges, A., McHardy, A.C., Sczyrba, A., Barton, M.D.: Bioboxes: standardised containers for interchangeable bioinformatics software. GigaScience. 4, : 47 (2015).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2762833
    Kohrs, F., Wolter, S., Benndorf, D., Heyer, R., Hoffmann, M., Rapp, E., Bremges, A., Sczyrba, A., Schlüter, A., Reichl, U.: Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities. Proteomics. 15, 3585-3589 (2015).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [3]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
    Wibberg, D., Luque-Almagro, V.M., Igeño, M.I., Bremges, A., Roldán, M.D., Merchán, F., Sáez, L.P., Guijo, M.I., Manso, M.I., Macías, D., Cabello, P., Becerra, G., Ibáñez, M.I., Carmona, M.I., Escribano, M.P., Castillo, F., Sczyrba, A., Moreno-Vivián, C., Blasco, R., Pühler, A., Schlüter, A.: Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology. 175, 67-68 (2014).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [2]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
    Gillett, A., Bergman, P., Parsa, R., Bremges, A., Giegerich, R., Jagodic, M.: A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis. Plos One. 8, : e81912 (2013).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512 OA
    Bremges, A., Schirmer, S., Giegerich, R.: Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics. 11, : 222 (2010).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     

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