17 Publikationen

Alle markieren

[17]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2018)
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants.
Microbial Biotechnology 11(4): 667-679.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome.
JOURNAL OF BIOTECHNOLOGY 267: 12-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, Off S, Stantscheff R, Zverlov VV, Schwarz WH, König H, Liebl W, Scherer P, McHardy AC, Sczyrba A, Klocke M, Pühler A, Schlüter A (2017)
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes.
Biotechnology for Biofuels 10(1): 264.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[14]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu Y-W, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin H-H, Liao Y-C, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk H-P, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC (2017)
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software.
Nature Methods 14(11): 1063-1071.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
Stolze Y, Bremges A, Rumming M, Henke C, Maus I, Pühler A, Sczyrba A, Schlüter A (2016)
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants.
Biotechnology for Biofuels 9: 156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[12]
2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
Bremges A (2016)
Assembling the microbial dark matter.
Bielefeld: Universität Bielefeld.
PUB | PDF
 
[11]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, König H, Pühler A, Schlüter A (2016)
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment.
Journal of Biotechnology 232: 50-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, Blasco R, Pühler A, Schlüter A (2016)
Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing.
Journal of Biotechnology 232: 61-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
Bremges A, Singer E, Woyke T, Sczyrba A (2016)
MeCorS: Metagenome-enabled error correction of single cell sequencing reads.
Bioinformatics 32(14): 2199-2201.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, Jaenicke S, Goesmann A, Sczyrba A, Scherer P, König H, Schwarz WH, Zverlov VV, Liebl W, Pühler A, Schlüter A, Klocke M (2016)
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates.
Biotechnology for Biofuels 9(1): 171.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant.
Journal of Biotechnology 231: 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant.
GigaScience 4(1): 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[5]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2762833
Kohrs F, Wolter S, Benndorf D, Heyer R, Hoffmann M, Rapp E, Bremges A, Sczyrba A, Schlüter A, Reichl U (2015)
Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities.
Proteomics 15(20): 3585-3589.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782501
Belmann P, Dröge J, Bremges A, McHardy AC, Sczyrba A, Barton MD (2015)
Bioboxes: standardised containers for interchangeable bioinformatics software.
GigaScience 4: 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, Becerra G, Ibáñez MI, Carmona MI, Escribano MP, Castillo F, Sczyrba A, Moreno-Vivián C, Blasco R, Pühler A, Schlüter A (2014)
Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344.
Journal of biotechnology 175: 67-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
Gillett A, Bergman P, Parsa R, Bremges A, Giegerich R, Jagodic M (2013)
A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis.
Plos One 8(12): e81912.
PUB | DOI | WoS | PubMed | Europe PMC
 
[1]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906810
Bremges A, Schirmer S, Giegerich R (2010)
Fine-tuning structural RNA alignments in the twilight zone.
BMC Bioinformatics 11(1): 222.
PUB | DOI | WoS | PubMed | Europe PMC
 

Suche

Publikationen filtern

Darstellung / Sortierung

Zitationsstil: bio1

Export / Einbettung

17 Publikationen

Alle markieren

[17]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2018)
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants.
Microbial Biotechnology 11(4): 667-679.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome.
JOURNAL OF BIOTECHNOLOGY 267: 12-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, Off S, Stantscheff R, Zverlov VV, Schwarz WH, König H, Liebl W, Scherer P, McHardy AC, Sczyrba A, Klocke M, Pühler A, Schlüter A (2017)
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes.
Biotechnology for Biofuels 10(1): 264.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[14]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu Y-W, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin H-H, Liao Y-C, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk H-P, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC (2017)
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software.
Nature Methods 14(11): 1063-1071.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
Stolze Y, Bremges A, Rumming M, Henke C, Maus I, Pühler A, Sczyrba A, Schlüter A (2016)
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants.
Biotechnology for Biofuels 9: 156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[12]
2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
Bremges A (2016)
Assembling the microbial dark matter.
Bielefeld: Universität Bielefeld.
PUB | PDF
 
[11]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, König H, Pühler A, Schlüter A (2016)
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment.
Journal of Biotechnology 232: 50-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, Blasco R, Pühler A, Schlüter A (2016)
Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing.
Journal of Biotechnology 232: 61-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
Bremges A, Singer E, Woyke T, Sczyrba A (2016)
MeCorS: Metagenome-enabled error correction of single cell sequencing reads.
Bioinformatics 32(14): 2199-2201.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, Jaenicke S, Goesmann A, Sczyrba A, Scherer P, König H, Schwarz WH, Zverlov VV, Liebl W, Pühler A, Schlüter A, Klocke M (2016)
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates.
Biotechnology for Biofuels 9(1): 171.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant.
Journal of Biotechnology 231: 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant.
GigaScience 4(1): 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[5]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2762833
Kohrs F, Wolter S, Benndorf D, Heyer R, Hoffmann M, Rapp E, Bremges A, Sczyrba A, Schlüter A, Reichl U (2015)
Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities.
Proteomics 15(20): 3585-3589.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782501
Belmann P, Dröge J, Bremges A, McHardy AC, Sczyrba A, Barton MD (2015)
Bioboxes: standardised containers for interchangeable bioinformatics software.
GigaScience 4: 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, Becerra G, Ibáñez MI, Carmona MI, Escribano MP, Castillo F, Sczyrba A, Moreno-Vivián C, Blasco R, Pühler A, Schlüter A (2014)
Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344.
Journal of biotechnology 175: 67-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
Gillett A, Bergman P, Parsa R, Bremges A, Giegerich R, Jagodic M (2013)
A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis.
Plos One 8(12): e81912.
PUB | DOI | WoS | PubMed | Europe PMC
 
[1]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906810
Bremges A, Schirmer S, Giegerich R (2010)
Fine-tuning structural RNA alignments in the twilight zone.
BMC Bioinformatics 11(1): 222.
PUB | DOI | WoS | PubMed | Europe PMC
 

Suche

Publikationen filtern

Darstellung / Sortierung

Zitationsstil: bio1

Export / Einbettung