20 Publikationen
-
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946303Bohnenkämper, Leonard, Dias Vieira Braga, Marília, Dörr, Daniel, and Stoye, Jens. “Computing the rearrangement distance of natural genomes”. Journal of Computational Biology 28.4 (2021): 410-431.PUB | DOI | WoS | PubMed | Europe PMC
-
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712Rubert, Diego, Martinez, Fábio Henrique Viduani, Stoye, Jens, and Dörr, Daniel. “Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants”. BMC Genomics 21.Suppl. 2 (2020): 273.PUB | PDF | DOI | WoS | PubMed | Europe PMC
-
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943733Nützmann, Hans-Wilhelm, Dörr, Daniel, Ramírez-Colmenero, América, Sotelo-Fonseca, Jesús Emiliano, Wegel, Eva, Di Stefano, Marco, Wingett, Steven W., Fraser, Peter, Hurst, Laurence, Fernandez-Valverde, Selene L., and Osbourn, Anne. “Active and repressed biosynthetic gene clusters have spatially distinct chromosome states”. Proceedings of the National Academy of Sciences (2020): 201920474.PUB | DOI | WoS | PubMed | Europe PMC
-
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939598Sevillya, Gur, Dörr, Daniel, Lerner, Yael, Stoye, Jens, Steel, Mike, and Snir, Sagi. “Horizontal Gene Transfer Phylogenetics: A Random Walk Approach”. Molecular Biology and Evolution 37.5 (2020): 1470–1479.PUB | DOI | WoS | PubMed | Europe PMC
-
2020 | Preprint | Veröffentlicht | PUB-ID: 2939861Bohnenkämper, Leonard, Dias Vieira Braga, Marília, Dörr, Daniel, and Stoye, Jens. “Computing the rearrangement distance of natural genomes”. arXiv:2001.02139 (2020).PUB | Download (ext.) | arXiv
-
-
2019 | Datenpublikation | PUB-ID: 2936848Dörr, Daniel, and Rubert, Diego. Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University, 2019.PUB | Dateien verfügbar | DOI
-
-
-
2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922Dörr, Daniel, Feijão, Pedro, and Stoye, Jens. “Family-Free Genome Comparison”. Comparative Genomics: Methods and Protocols. Ed. João C. Setubal, Peter Stadler, and Jens Stoye. New York: Springer Verlag, 2018.Vol. 1704. Methods in Molecular Biology. 331-342.PUB | DOI
-
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814Dörr, Daniel, Balaban, Metin, Feijão, Pedro, and Chauve, Cedric. “The gene family-free median of three”. Algorithms for Molecular Biology 12.1 (2017): 14.PUB | DOI | WoS | PubMed | Europe PMC
-
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492Luhmann, Nina, Dörr, Daniel, and Chauve, Cedric. “Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes”. Microbial Genomics 3.9 (2017): e000123.PUB | DOI | WoS | PubMed | Europe PMC
-
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016Schulz, Tizian, Stoye, Jens, and Dörr, Daniel. “Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery”. Proceedings of RECOMB-CG 2017. Berlin: Springer Verlag, 2017.Vol. 1704. Lecture Notes in Bioinformatics. 197-212.PUB | DOI
-
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967Dörr, Daniel, Kowada, Luis Antonio B., Soares de Araujo, Francisco Eloi, Deshpande, Shachi, Dantas, Simone, Moret, Bernard M. E., and Stoye, Jens. “New Genome Similarity Measures based on Conserved Gene Adjacencies”. Journal of Computational Biology 24.6 (2017): 616-634.PUB | DOI | WoS | PubMed | Europe PMC
-
-
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362Lechner, Marcus, Hernandez-Rosales, Maribel, Dörr, Daniel, Wieseke, Nicolas, Thévenin, Annelyse, Stoye, Jens, Hartmann, Roland K., Prohaska, Sonja J., and Stadler, Peter F. “Orthology Detection Combining Clustering and Synteny for Very Large Datasets”. PLoS ONE 9.8 (2014): e105015.PUB | PDF | DOI | WoS | PubMed | Europe PMC
-
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033Dörr, Daniel, Stoye, Jens, Böcker, Sebastian, and Jahn, Katharina. “Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings”. BMC Genomics 15.Suppl. 6: Proc. of RECOMB-CG 2014 (2014): S2.PUB | PDF | DOI | WoS | PubMed | Europe PMC
-
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648Dias Vieira Braga, Marília, Chauve, Cedric, Dörr, Daniel, Jahn, Katharina, Stoye, Jens, Thévenin, Annelyse, and Wittler, Roland. “The Potential of Family-Free Genome Comparison”. Models and Algorithms for Genome Evolution. Ed. Cedric Chauve, Nadia El-Mabrouk, and Eric Tannier. London: Springer Verlag, 2013.Vol. 19. Computational Biology Series. 287-307.PUB | DOI
-
-
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353Dörr, Daniel, Gronau, Ilan, Moran, Shlomo, and Yavneh, Irad. “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”. Algorithms for Molecular Biology 7.1 (2012): 22.PUB | PDF | DOI | WoS | PubMed | Europe PMC